LOC110503778


Basic Information

Item Value
gene id LOC110503778
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 12952684 ~ 13036439 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582311.2
TTCCAGTATTTGCCGGTATGAGTTGTTCAGTGATGTCAGTGCAGTGGCGAGGAATCGGTCACACAGCATAACATGTAGTCACCCATATCGTAATGACCAACAAGTATTATGAAGAGGCTTGTCATCAGAATGATCCTCATGTGTCAGAGGGGGTGATTGACAACGCAGTTGATATGGACAGTCTGAACAGGAACCTGCCTGAGTGTGGACGGCAAACCCATCAGGTGttacagAGCACGCCACTGGATCTGTTTGAGAGCGGCAAGGGGCTGAAGGTCCAGGCAGAGCGCCCCCATCTGGTCAGTCTGGGCAGTGGCCGTCTCAGTACGGCCATCACACTGCTGCCCCTTCCTGAAGGCAGGACCACGTTGGGCCATGGGGCGATGGACATCAGCATCCAGGGCCCAGGAGTTGCCGCCCAGCACTGCTACATAGAGAACCGGGCAGGGATCATCACTCTCCACCCCTGTGGGAACCAGTGTGCCACAGACGGGCTTCCTGTCACCAAACCGGTCCGCCTGTCACAAGGCTGTATGCTGTGTTTTGGCCAGTCAGTATTTTTCCGCTTCAACCACCCAGAGGAGGCGTTCAGGATGAAGAGCATGATGCCAGGGGGAAGCAAGGGCTCTGGTGGGAACTACAGAATCCACTCAGACTCAAAGAGCCTGGTCAATGGGAACCATCAATCAGGAGCATCCCAGTCACACCACCCAGCCCCCGGCGAGAGAGTCCCACGCTCCGAGCATAGTGCCATCGTCAGCTCCATCGAAAAGGACCTCCAGGACATCATGGACTCCCTAGTCATGGATGATCCCCAGCCTTCCTCTTCAGACTCAAAAAATCCAGACCACCCCATCCCCCACTCCCCGCTGTCTCCCATGGTCAACGGAGGAGGCCgctacctcctctcccctcccaccaGCCCGGGGGCCATGTCAGTGGGCTCTAGCTATGAGAACACCTCCCCGCccttctcccctctgtcctctccctcggCGGCCAGCAGCGCAGGCAGCTACACCAGCCCTTCTCCCAGCGGCTGCCTGGACCCCCAGGACCTATCCCTGCCCCCCGTGCCGGTCCGCTCATCCAGCTACAACTACACAACTACACCACCCATCCCCCAGCCAAGGACCATAATGACAAACTACAGCCCCGGCGGTGGGGTGCAGAGGGTTCCTGAGAGCCCCAGGCTCCAGAGGAAATGTCTCCTGGAGGCCCCCCAGAGCCCCAAGCCGGCCCGCAGAGGCCAGAGCCTGGACGGCCCAGGGGTGATGGGTTCAGAGAGCCCCAGACTGACCCACCTATCTGTTGCATCAGCCGATGCCGGGTACATGGGCAGGAACGCAGTGCCAAGTAACCCCAGACTCACCTCCAATTTCCCCTACGCCGCCACGTCTTCCTCCCCATCCAGTCCCAGGACGAAAGCGGGCACCATCCTCCAGGAGCGTCCGGCCAGCCCCTTCAGAGAGCAGGTGGACCGCTCCCTCACCTCCAGCTCTTCCAGACAGCTGCTATCCCAGCCCAGCAGGGCCTTCCAGCCTCCCCTGGACCCCATCGTCCACATAATCCAGGGGGGCTCTCCACTCCAGCAGCACCACCCCTTCCCCCACCCTCTCACGCTGCAGCCCCCAAAGAGCCCTCGGCTCTCCCACAGGAACCTCGACCTCAGCGgcggtggtggcagcagcatgagGGAGCTCCCCCCTCTCAGCCCCTCCATGGCTCGCAGAGGGGTGCCTGTTCTCCCGGGGGCTCTCCCTGGAAGTATCCTCATGTTGAGAACGCCCGAGAGCCCATCATCATTGGGGAAGCTGGGAGTCCCGGAGAGCCCCGGGCTCCGACGCAAGGCCGGCTCCCCCCCGGAGGACCAGTTTGGCGGCAGTGTGGTCCGAGCCCGCAGCCCCTCCCCTACCTTGGGGCTGATGATGATGGAGAGCGGGGGAGGGGGAAGGAAGGCCAGCTTTGGGAACGCCCTCTCCCCTGCTTACAGCCTGGGCTCCCTACCTGGCTCTTCGCCTCTCGCCAGCCCCAGGGGCCATAGGAAGATGTCCGGGGGCCCCCGGGATCAGAGGGGCCCCCACCCGGGCATGCGGGAACGGAAAAACAGCATCTCTGAGATCAGCGACAACGAGGACGAGCTGTTGGAGTACCACCGgcgccagagagaggagaggctcagggagcaggagatggagagactgGAGAGGCAGAGGCTAGAGACCATCCTGAACCTGTGCGCCGAGTACAACAAGGGCGATGGGCCCTTTGGGGGTGAGGCAGATGGGAGGATGGGCTTCCCTGGGGGCCTGGGCCCGGGGGAGGGGGCGGCTAGGAGACCCTCTATGGACAGCTTGGTGGGGGCCGGCTCGCTGCTTCGTAGCATGGCccagagacagcagagggagagcGACGAGGAGAACCTCAAGGAGGAGTGCAGCAGTACAGAGAGCACCCATCAGGAGCATGAGGAGCAGTCTGTTTCTGGCGGCGTGGAGCGGACAGAGCTGGGTTACCTGGAGGACGAGAGGGTCAGAGTGCTGGCCCGAGTCGACGAGCTCAAATCACGAATCACAGAGCTGGAGCAACAGCTACAGGAGTCCAAGCAGGAGGCAGAGATGGAGCGGGCCCTgctgcagggagagaggcaggcggaACTGGACCAGGTAGAGGCAGAGACGGAGATCATCGGACAGCTGCAACACAAGCTCAACGAGCTGGAGAACGCCAtccagagggagaaagacaagGAGGGCGAGACCCTGGAGTCAGAGACAAAACAGTTTGAGGACCTGGAGTTCCAGCAGCTGGAGAGGGAAAGcagcctggaggaggagagggagaccatCAGCCAGCAGCTGCTGCAGGAGAGGGATGAGTACCACACCAGCGTGGCCAAGAGAAAGGACAAGATGGCAGCTCTGGAAGGCCAGGCCAGTCAGCTGGGACAGCAGGCTTCTCAGGAGTGTGACAGGCTGGCTAAGGACAGGAACCTTACCCTGCAGATTCTCCATAAggaGAAAGAGAGGCTATCGGCCTTAGAGAAGAGGTACCTCAGCCTTACCGGAGGAAGATCTTTCCCTAAGTGTTCCAGCACCATGAAAGAGGAATTGCTCCATATCAGCCAGACTGACCTGTTAGAGGACTCCCACTCCCAGCATCCTCTCTGCCGTCCCGCTGCTTCCTATTTAAGCGCCGCCTCTCAGTTATACCCAGGGGGCAGCCCGACAGAGGAGTACGTGACTGTGGGCCAGTTAACTCAGTTCTTTGGGATGCCGAAGGTCGAgtcctcccctacctctcctctccggCCCCTCCAGTCAGGAGCTGGAGACCCCGccttctcctgcctctcctttcGTCAcggctcctccccctctctctctgttgagTATCAGCCAGAGTGCAGTAGGCCTCAAATCCCCACTCTCGATTTAGAGCAGTGGTACCAGGAGGTGATGGCTGCTGTGgagagcagccagatctgcccccctccccctctcccagctAAACCTCTATCCACTCGCAGGCCTATGCAGGGGTTCCGTTCCAAGCTGGACAGTGATGCTAGGCAGACGGTACATCAACCCAAAGCAGGCTCCGGATCCCATCTGCAGTACGTAGCCACTACACTGGGACGCAACACAACCTCCAAGAGCCCACTGATGGTTCCCAACAGTACAGGCAGTTTGCCACGGAACTTGGCTGCCACCATGCAGGACATAGAGACCAAGAGAGCGCTAGCCTTACAGCAGAAAGGCCAACAGGTGATTGAGGAGCAGCGGCGTCGATTGGCTGAGCTGAAGCAGCGGGCTGCAGTGGAGGCCCAGTGCCAGTGGGATGCCCTCCACGGCTCTCAGACCCACCTCTACGCCCCCTCACACGCCCACGGCCCTCCCATGGTGCACCACTCCATCCTGCACCACCAGCCGCCGTCGGCGGGCGAGCAGCCGTACGACACACTGAGCCTGGAGAGCTCCGACAGCATGGACACCAGCGTCTCCACAGGCAACAACTCGGCCTGCTCCCCCGACAACATGTCCAgTGCCAGTGGGATGGATGCGCTGAAGATCGAGGAGATGGAGAAGATGCTGAAGGAAGCCCACCTAGAGAAGGCCAGGCTCATAGAATCCAGAGAGCGAGAGAGCCATGCCCGTAGGCAgatgctggaggaggagaggaggcggcGCGAGGAGGCTGAGAAGAGGCTGCAGGACGAGACGGTGCACAGGCAGCAGCTCGTGGACAAGGAGGTGAAGATGAGGAGCAAGAACTTCTCCCAGGCCCGTCCTATGACTCGTTACCTGCCCATCCGCAAGGAGGAGTTTGACCTGCGCTCCCACATCGAGTCATCCGGCCACAACGTGGAGACCTCTTACCACGTGATCCTCACAGACAAGATGTGTAAGGGTTACCTGGTCAAGATGGGCGGCAAGATCAAGTCGTGGAAGAAACGCTGGTTTGTCTTCGACCGCCTCAAAAGGACCTTCTCCTATTACGTTGACAAGCACGAGACCAAACTGAAAGGAGTCATCTATTTCCAGGCCATTGAAGAGGTCTATTACGATCACCTGCGTAGCGCCACGAAGAGCCCCAATCCCTCGTTGACCTTCTGTGTGAAGACTCACGACAGACTCTACTACATGGTGGCCTCTGCCCCGGAGGCCATGAGGATATGGATGGATGTTATAGTAACTGGAGCCGAGGGCTACACGCAGTTCATGAACTAAGAGACGGCTGGGACACACTTCAATAGACTCAGGCCTTATCCCTCCCAGTATTGGGAAATTGCCTTGTTACGTTCATTATCTATTTTTAAATCACTTTACAATAGACGTTTTTCTACTTGCTTCTGCCCGCAGATTGAAAAAGACACTGTATATAACCAATGTCAGACTTTCCGCTCAAAAGCCTTTATTTTTGCCAAATTGAGTGTTACATGCTCTTGCTTGTGAGACCTACTTTGTGTATCCGTGTCTAAtcgttcacttttttttttttacactggaaTAGTGGAGAATAAACCTAATTGAAACCAGTGAGGAAGACTTACTGCTGAACTAGATTCCACTAATGATGACAGCCATTCCACTGAGACCAAACAGTACAATAATGCTAATCAGTCTGTGCCTTGAGGTCATAATCCTAGTCGGTTATTGTCACTGAACAGTAAGTCCCAGCCCCCCTGTAGATTTGATAGGTGGTGACGCCAGGTCAAATTGCTTCCGCTTTAGAATGTCATGATCTGGTAGCTTGACATTGTAAAGGATTCTGAATCTATTTCTTTATGGTTTATAGTACCTCAGGCAGGTTAACCATGTCACTCAAGTGTGAGAAAAGACCTTGATATATTTTCCCCACCGAAATGGGTATAACCAAACGTTCAGTGTTAGAAAAAGGTTTTATACTGTAAAATGTCACTCATTTAAC

Function

NR:

description
pleckstrin homology-like domain family B member 1 isoform X15

GO: NA

KEGG:

id description
K23794 PHLDB; pleckstrin homology-like domain family B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582311.2 True 5430 mRNA 0.57 24 12952684 13036439

Neighbor

gene id symbol gene type direction distance location
LOC118944087 LOC106612531 coding downstream 53955 12881774 ~ 12898729 (-)
LOC110503783 NA coding downstream 156629 12787307 ~ 12796055 (-)
LOC110503777 atf5 coding downstream 177441 12770857 ~ 12775243 (-)
LOC110503775 pou2af1 coding downstream 228675 12716285 ~ 12724009 (-)
LOC110503769 LOC106612539 coding downstream 355992 12570052 ~ 12596692 (-)
LOC110503787 LOC106612780 coding upstream 388289 13424549 ~ 13437553 (-)
LOC110503790 LOC107702995 coding upstream 439042 13475481 ~ 13546234 (-)
LOC110503789 NA coding upstream 509898 13546337 ~ 13555170 (-)
LOC110503327 LOC106580965 coding upstream 553428 13589867 ~ 13593563 (-)
kpna4 kpna4 coding upstream 557503 13593942 ~ 13607211 (-)
G1903598 NA non-coding downstream 13446 12867713 ~ 12939238 (-)
G1903595 NA non-coding downstream 18998 12861631 ~ 12933686 (-)
G1903574 LOC106612534 non-coding downstream 120989 12817189 ~ 12831695 (-)
G1903523 NA non-coding downstream 243086 12709377 ~ 12709598 (-)
G1903479 LOC106612553 non-coding downstream 244193 12704010 ~ 12708491 (-)
G1903604 mfsd1 non-coding upstream 20664 13057103 ~ 13068432 (-)
G1903653 NA non-coding upstream 34158 13070597 ~ 13070898 (-)
G1904093 NA non-coding upstream 73976 13110415 ~ 13110731 (-)
G1904102 NA non-coding upstream 97806 13134245 ~ 13134915 (-)
G1904104 NA non-coding upstream 104340 13140779 ~ 13195201 (-)
G1902875 NA other downstream 900036 11967842 ~ 12052648 (-)
LOC110503324 LOC106612555 other downstream 972222 11941794 ~ 11982431 (-)
LOC110503748 LOC106612568 other downstream 1491637 11453367 ~ 11478299 (-)
G1901922 LOC100380637 other downstream 1759925 11190675 ~ 11192759 (-)
rabx5 rabx5 other upstream 680211 13716650 ~ 13719451 (-)
G1904408 NA other upstream 721389 13757828 ~ 13758644 (-)
G1904846 spg20 other upstream 1006531 14042970 ~ 14043449 (-)
G1904877 NA other upstream 1053283 14089722 ~ 14142728 (-)
G1904919 NA other upstream 1143624 14180063 ~ 14214520 (-)

Expression


Co-expression Network