LOC110503787 (LOC106612780)


Basic Information

Item Value
gene id LOC110503787
gene name LOC106612780
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 13424549 ~ 13437553 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582321.2
AGCAGTTCGTGAGCGTAGTAATTGCTCCAGGGCTGCGCTAGTGCAACGATCTAAATCATTTGTAATTGTTGACAATGAGACATCCATTGAAAAACATGGTAGTAAGATCAGCATATTTTTGCCTAAACTCAAATTTAGATTATCATTAGATAAACTAGCCGACGTTACAAATACTAAGCCTAGGTCTACTACGGGAGAGTGTATTTGTTTTGAGAGCTCTGTTTTTGGCGAAATTACTTTGTACGTAAAATTATATTTAACCTATTGAATATAAACCGTTTTGATTATGCCTACAAAAACATGTGTAAATCATAACAAAGTGAACCACGAGGGCTGCGCTGAGTCTTACGTCGTCTTTAAGGTATGGTTTTAAAAGGAGATGACCGCTGACAGAGATACAAGCAGGTGCTATAACGAAACCTCACGGAGGTGAAGCAAAACGACCAAAACAAAACCTACAGCGAAAGTTCCTCAAAGGGCACATAATGGTGGCGAGGATGGCGAGCTGCGGAGCCACTTGTCACCTGGATGAAGGAGATGGAGACGTCCCTGTCCCTGGCCAGAAGGGTAATCTGACTGAAAGTGATAACAGTGGCTCAGACAACGCAGGGACATCTACAGAGGAGAGTTCTGAAGATGAGGAGGATTCTGACGGCTCTGCTGTGAAAGGAGGAGCAGAATCAGAGGAGCCTGCCGTTGAGGATTCCTGTAATGAATCGGAGTCGGCTCCTCAACCTGATGCAGAGGTTTCCCTTGCTAAAGATATGCCCCCCAAGACATGTGAAAAATGCAAGGCTGTCCAGCAGAGTCAAGGCAATGATCTGGTTACTCCCAGGAAGATCTCTAAAAGTCGCCTACAGGTGcagctggagggagagggggcatATGAGTGCTCCGTCACCGGCCTGGTGTTTGAGGTGTCGGAGAGAGTCCTGATCCGCTACTCGGTCCTGTCCTGGTCCAAGTTTGGCATGTTCCTCGGGGACTCCTGGAGGTTCGCTGGGCCCATCTTCAACGTGGACTGTGTCAACAGCCCCTCGTCCGTCCTCACCTCCATCCAGttccctcactccctctgccTCGCTGACCCTGACAGTGAAATGACCTTCAGTGTCCTGCATATGAAGGACAGCTGTCCGGTGATCGAGCCCTCGGTTGACCACTCTGGCAGCCATGTAAAGTGGCGTGTGTCATCCCTGTCCCCGGTGGGGCCCATTGTCCAGAGCAGCAAGCCTGTAGAGCACCACGGGGTGGTCCTGGTGTATAAGGAACTGGCTCTGAACAACTCCTACTCCTTTCGCATCTACCTGGCCACCAACAACTCCTCCGACATTAAGGACATAGGGAAGGAGGTGCGTTGCTCCAAGAGGCGTTACCTGAAGGTAGAGAAGCCACCCACCTGTAAGCTGGATGAGAGGAGGTACCACCTCATGAGTGAACCAGAGGGAGACATCAGCCCTGCGGACTTGCAGTTCACGCTGGCCGTGACTAAATTGAAGGGATATTTTGAGGCATTCTTTGAGCAGCCCCCTCCCTTCAAGCTCTCCCTCATAGAGACAGAGTCCGACCAGACTGTGTGGTCCGCCACCATCAGAGAAGGTGACTGTGTGGACAATGCAGTTGAAAAACTAAGGAAACGGACAGATAGCAGGAAGAGAAGCACCAGCACATCAGAGGAAGAGATGACCAATAAGAGACCTCGATGCACAGATGAGTCAGACGGAGTGCAGACAGTGCAGGTCCCAGACATGTCGCCCAAGCAGCTGATGCAGGTGGCTAAGCGGCTGGGGAAGGAGTGGAAGCAGGTGGCTATCGGTTGCCTGGACCTGTCCTCCAAAGAGCTGGACGATATTCAGGCCAGCGAGGAGGATGTCATCATGCAGAGGTTTAAGGCATTGGAGCGCTGGAAGACTAGCAGGCCGAAGGGTCAAGCCACTGTCGCTCACCTCTTGAGGAGCCTACAGGAGTTGGATGACCTGCCCAATGAGGTCCACCAGACACTGCAAGATATGATGGACAATAAAGCTGCCAAATGACATCTTTAGCCTCCCTAGGTCCCTGCCTTTCCGCAGCCCTGTCGTCAGTAAGACAGAGAGACAATGGGTGAGAGACGTTTGAACTCTTAACTTGAAGACAGAAATCTCTACTTTATGCTGTATGGCtggggtactcaactcttaccctgTGAGGTCCAGAGTcttctggttttctgttctacatgatcattaattgcacacacctggtgacTCACgtttaaatcagtccctgattagaggggaacagtgACAACAttcagtggaactggcttcaaggttcagagttgagtttgagggctgtATGGCGTAGGATGAATGTTTTCTCTAGACCAGatatgggcaactccagtcctcgggggcctggtTGGTGTcacacttccccccccccccccccccccccccccatccctagcaaacacagctgattaaactaattgGATTCTAAATGGAAGAACATAATTAGTTGATTATGGGAGtctggtgtgttagctggggcaaaagtgtgacaccaatccaGCCCCTGAGGACTGGTGTTGCACGTCCTTGCTCTAGAGGCTGATCTAAGGTCAGCTTTGCATACCTCCTTCATAAATTGAGGATTTGAGGAGGGTAcattgatcctagatcagaagcATTATGTGTCCTGGCACCCCAGCCTAGCACTGTCACCCCCTCTCAGCCCAAGACAattgccttcaactgaaatgtttgATTCCTGCAGACCTGGATGCTGGATCTAGAGAACTTTGTGCCCCACCTAGTAGTGATATTTAGTAGACCCTGGCTTTTCACCCCTCCCAAAGACAATTTCACCAAAGCCTTTCATCTTGAAGGGTCATTCTCTTAGATGTTCACAAATGGTCCATTAACCTGGAATAATGCAGACGTACCTGAAGCTGTAGAGGTACCCCAAACAGCCAGGAGCTAATGCTACGACCCGCGGTGCAGAGAAGACTTGTTATGTCATAGATGAGCTCTGGGAAATAGGTAGCTAAAGTGTAGCCAGTAACAGACATGGTGCTGCAGTATGGAAACTGCTGACAAACTTATGGGGAattgtatattttgtattttgatATTTGTCATTCAAGACATTACCACTTAATCATGGAATTGGACCAACTTCTCAAGGAGTGTAGCTGTACTTTTTATACTGTGTACATATCCTCTCTGTATTTAAACTATGCTgcgattgtttttatttttgtaaagtTTGTGTTTGTTAGTTTTTATGTGTGTTATGACCAAATTGAGCCTGTCAAACTATAGCTAAGCTTCATCTCAGAGAAAAGATTGGTAATATTTACTTTTGTTTAGCCTGAATCGTGTCCATTCTGTAGCCTGGAAATCACACTCAGTGCATTTGAACATGGTGGGATTGAATGAATTCCAGAAACCACTAATTTAGGAGAGTATTTTTAGTTAATAAAAATGGGTACTAACTCATTTAAAACACCTTTCAATAGGGATGTCACTGTTGCAGATACTGGGATCCAAATACCTTAGGGAGAGTAACAACGATTAACTGTTGAAATTATGAATGGGAAAACCATGAGTTCAGTGGTAAATTGGGTATTGGATGCCATTTGCAAGTGTGTACATATGTTTACACTCAGAATGATCTCTCAAAATCCATCATTTAATACTCCAGTTCTTACATGTGCACTTCTGTAATGTTACACTTCAGGTATGGGCCTTCGTAGGGCTCTGGGTATGGTGCCTAAGATTACAAATCTGTGActgaataaaatatttttttggaaAGA
>XM_021582322.2
AGCAGTTCGTGAGCGTAGTAATTGCTCCAGGGCTGCGCTAGTGCAACGATCTAAATCATTTGTAATTGTTGACAATGAGACATCCATTGAAAAACATGGTAGTAAGATCAGCATATTTTTGCCTAAACTCAAATTTAGATTATCATTAGATAAACTAGCCGACGTTACAAATACTAAGCCTAGGTCTACTACGGGAGAGTGTATTTGTTTTGAGAGCTCTGTTTTTGGCGAAATTACTTTGTACGTAAAATTATATTTAACCTATTGAATATAAACCGTTTTGATTATGCCTACAAAAACATGTGTAAATCATAACAAAGTGAACCACGAGGGCTGCGCTGAGTCTTACGTCGTCTTTAAGGTATGGTTTTAAAAGGAGATGACCGCTGACAGAGATACAAGCAGGTGCTATAACGAAACCTCACGGAGGTGAAGCAAAACGACCAAAACAAAACCTACAGCGAAAGTTCCTCAAAGGGCACATAATGGTGGCGAGGATGGCGAGCTGCGGAGCCACTTGTCACCTGGATGAAGGAGATGGAGACGTCCCTGTCCCTGGCCAGAAGGGTAATCTGACTGAAAGTGATAACAGTGGCTCAGACAACGCAGGGACATCTACAGAGGAGAGTTCTGAAGATGAGGAGGATTCTGACGGCTCTGCTGTGAAAGGAGGAGAATCAGAGGAGCCTGCCGTTGAGGATTCCTGTAATGAATCGGAGTCGGCTCCTCAACCTGATGCAGAGGTTTCCCTTGCTAAAGATATGCCCCCCAAGACATGTGAAAAATGCAAGGCTGTCCAGCAGAGTCAAGGCAATGATCTGGTTACTCCCAGGAAGATCTCTAAAAGTCGCCTACAGGTGcagctggagggagagggggcatATGAGTGCTCCGTCACCGGCCTGGTGTTTGAGGTGTCGGAGAGAGTCCTGATCCGCTACTCGGTCCTGTCCTGGTCCAAGTTTGGCATGTTCCTCGGGGACTCCTGGAGGTTCGCTGGGCCCATCTTCAACGTGGACTGTGTCAACAGCCCCTCGTCCGTCCTCACCTCCATCCAGttccctcactccctctgccTCGCTGACCCTGACAGTGAAATGACCTTCAGTGTCCTGCATATGAAGGACAGCTGTCCGGTGATCGAGCCCTCGGTTGACCACTCTGGCAGCCATGTAAAGTGGCGTGTGTCATCCCTGTCCCCGGTGGGGCCCATTGTCCAGAGCAGCAAGCCTGTAGAGCACCACGGGGTGGTCCTGGTGTATAAGGAACTGGCTCTGAACAACTCCTACTCCTTTCGCATCTACCTGGCCACCAACAACTCCTCCGACATTAAGGACATAGGGAAGGAGGTGCGTTGCTCCAAGAGGCGTTACCTGAAGGTAGAGAAGCCACCCACCTGTAAGCTGGATGAGAGGAGGTACCACCTCATGAGTGAACCAGAGGGAGACATCAGCCCTGCGGACTTGCAGTTCACGCTGGCCGTGACTAAATTGAAGGGATATTTTGAGGCATTCTTTGAGCAGCCCCCTCCCTTCAAGCTCTCCCTCATAGAGACAGAGTCCGACCAGACTGTGTGGTCCGCCACCATCAGAGAAGGTGACTGTGTGGACAATGCAGTTGAAAAACTAAGGAAACGGACAGATAGCAGGAAGAGAAGCACCAGCACATCAGAGGAAGAGATGACCAATAAGAGACCTCGATGCACAGATGAGTCAGACGGAGTGCAGACAGTGCAGGTCCCAGACATGTCGCCCAAGCAGCTGATGCAGGTGGCTAAGCGGCTGGGGAAGGAGTGGAAGCAGGTGGCTATCGGTTGCCTGGACCTGTCCTCCAAAGAGCTGGACGATATTCAGGCCAGCGAGGAGGATGTCATCATGCAGAGGTTTAAGGCATTGGAGCGCTGGAAGACTAGCAGGCCGAAGGGTCAAGCCACTGTCGCTCACCTCTTGAGGAGCCTACAGGAGTTGGATGACCTGCCCAATGAGGTCCACCAGACACTGCAAGATATGATGGACAATAAAGCTGCCAAATGACATCTTTAGCCTCCCTAGGTCCCTGCCTTTCCGCAGCCCTGTCGTCAGTAAGACAGAGAGACAATGGGTGAGAGACGTTTGAACTCTTAACTTGAAGACAGAAATCTCTACTTTATGCTGTATGGCtggggtactcaactcttaccctgTGAGGTCCAGAGTcttctggttttctgttctacatgatcattaattgcacacacctggtgacTCACgtttaaatcagtccctgattagaggggaacagtgACAACAttcagtggaactggcttcaaggttcagagttgagtttgagggctgtATGGCGTAGGATGAATGTTTTCTCTAGACCAGatatgggcaactccagtcctcgggggcctggtTGGTGTcacacttccccccccccccccccccccccccccatccctagcaaacacagctgattaaactaattgGATTCTAAATGGAAGAACATAATTAGTTGATTATGGGAGtctggtgtgttagctggggcaaaagtgtgacaccaatccaGCCCCTGAGGACTGGTGTTGCACGTCCTTGCTCTAGAGGCTGATCTAAGGTCAGCTTTGCATACCTCCTTCATAAATTGAGGATTTGAGGAGGGTAcattgatcctagatcagaagcATTATGTGTCCTGGCACCCCAGCCTAGCACTGTCACCCCCTCTCAGCCCAAGACAattgccttcaactgaaatgtttgATTCCTGCAGACCTGGATGCTGGATCTAGAGAACTTTGTGCCCCACCTAGTAGTGATATTTAGTAGACCCTGGCTTTTCACCCCTCCCAAAGACAATTTCACCAAAGCCTTTCATCTTGAAGGGTCATTCTCTTAGATGTTCACAAATGGTCCATTAACCTGGAATAATGCAGACGTACCTGAAGCTGTAGAGGTACCCCAAACAGCCAGGAGCTAATGCTACGACCCGCGGTGCAGAGAAGACTTGTTATGTCATAGATGAGCTCTGGGAAATAGGTAGCTAAAGTGTAGCCAGTAACAGACATGGTGCTGCAGTATGGAAACTGCTGACAAACTTATGGGGAattgtatattttgtattttgatATTTGTCATTCAAGACATTACCACTTAATCATGGAATTGGACCAACTTCTCAAGGAGTGTAGCTGTACTTTTTATACTGTGTACATATCCTCTCTGTATTTAAACTATGCTgcgattgtttttatttttgtaaagtTTGTGTTTGTTAGTTTTTATGTGTGTTATGACCAAATTGAGCCTGTCAAACTATAGCTAAGCTTCATCTCAGAGAAAAGATTGGTAATATTTACTTTTGTTTAGCCTGAATCGTGTCCATTCTGTAGCCTGGAAATCACACTCAGTGCATTTGAACATGGTGGGATTGAATGAATTCCAGAAACCACTAATTTAGGAGAGTATTTTTAGTTAATAAAAATGGGTACTAACTCATTTAAAACACCTTTCAATAGGGATGTCACTGTTGCAGATACTGGGATCCAAATACCTTAGGGAGAGTAACAACGATTAACTGTTGAAATTATGAATGGGAAAACCATGAGTTCAGTGGTAAATTGGGTATTGGATGCCATTTGCAAGTGTGTACATATGTTTACACTCAGAATGATCTCTCAAAATCCATCATTTAATACTCCAGTTCTTACATGTGCACTTCTGTAATGTTACACTTCAGGTATGGGCCTTCGTAGGGCTCTGGGTATGGTGCCTAAGATTACAAATCTGTGActgaataaaatatttttttggaaAGA
>TU2177989
tgtgttagctggggcaaaagtgtgacaccaatccaGCCCCTGAGGACTGGTGTTGCACGTCCTTGCTCTAGAGGCTGATCTAAGGTCAGCTTTGCATACCTCCTTCATAAATTGAGGATTTGAGGAGGGTAcattgatcctagatcagaagcATTATGTGTCCTGGCACCCCAGCCTAGCACTGTCACCCCCTCTCAGCCCAAGACAattgccttcaactgaaatgtttgATTCCTGCAGACCTGGATGCTGGATCTAGAGAACTTTGTGCCCCACCTAGTAGTGATATTTAGTAGACCCTGGCTTTTCACCCCTCCCAAAGACAATTTCACCAAAGCCTTTCATCTTGAAGGGTCATTCTCTTAGATGTTCACAAATGGTCCATTAACCTGGAATAATGCAGACGTACCTGAAGCTGTAGAGGTACCCCAAACAGCCAGGAGCTAATGCTACGACCCGCGGTGCAGAGAAGACTTGTTATGTCATAGATGAGCTCTGGGAAATAGGTAGCTAAAGTGTAGCCAGTAACAGACATGGTGCTGCAGTATGGAAACTGCTGACAAACTTATGGGGAattgtatattttgtattttgatATTTGTCATTCAAGACATTACCACTTAATCATGGAATTGGACCAACTTCTCAAGGAGTGTAGCTGTACTTTTTATACTGTGTACATATCCTCTCTGTATTTAAACTATGCTgcgattgtttttatttttgtaaagtTTGTGTTTGTTAGTTTTTATGTGTGTTATGACCAAATTGAGCCTGTCAAACTATAGCTAAGCTTCATCTCAGAGAAAAGATTGGTAATATTTACTTTTGTTTAGCCTGAATCGTGTCCATTCTGTAGCCTGGAAATCACACTCAGTGCATTTGAACATGGTGGGATTGAATGAATTCCAGAAACCACTAATTTAGGAGAGTATTTTTAGTTAATAAAAATGGGTACTAACTCATTTAAAACACCTTTCAATAGGGATGTCACTGTTGCAGATACTGGGATCCAAATACCTTAGGGAGAGTAACAACGATTAACTGTTGAAATTATGAATGGGAAAACCATGAGTTCAGTGGTAAATTGGGTATTGGATGCCATTTGCAAGTGTGTACATATGTTTACACTCAGAATGATCTCTCAAAATCCATCATTTAATACTCCAGTTCTTACATGTGCACTTCTGTAATGTTACACTTCAGGTATGGGCCTTCGTAGGGCTCTGGGTATGGTGCCTAAGATTACAAATCTGTGActgaataaaatatttttttggaaAGATGAATTTCATTTATTTCATTGCAAATAGTTTTCAGCTAGTAGAGGTAGACCTACAGCTTGATGAGGTCTTCATGACTGTTAGTAAACACATGTATAATTAAGTCATAGCCTACAGGTTCAGTGGCCTTAACAGAGTTGCTTGACTAATAATGACCATGCCAAGTtgggaaccaacagga
>TU2177988
tgtgttagctggggcaaaagtgtgacaccaatccaGCCCCTGAGGACTGGTGTTGCACGTCCTTGCTCTAGAGGCTGATCTAAGGTCAGCTTTGCATACCTCCTTCATAAATTGAGGATTTGAGGAGGGTAcattgatcctagatcagaagcATTATGTGTCCTGGCACCCCAGCCTAGCACTGTCACCCCCTCTCAGCCCAAGACAattgccttcaactgaaatgtttgATTCCTGCAGACCTGGATGCTGGATCTAGAGAACTTTGTGCCCCACCTAGTAGTGATATTTAGTAGACCCTGGCTTTTCACCCCTCCCAAAGACAATTTCACCAAAGCCTTTCATCTTGAAGGGTCATTCTCTTAGATGTTCACAAATGGTCCATTAACCTGGAATAATGCAGACGTACCTGAAGCTGTAGAGGTACCCCAAACAGCCAGGAGCTAATGCTACGACCCGCGGTGCAGAGAAGACTTGTTATGTCATAGATGAGCTCTGGGAAATAGGTAGCTAAAGTGTAGCCAGTAACAGACATGGTGCTGCAGTATGGAAACTGCTGACAAACTTATGGGGAattgtatattttgtattttgatATTTGTCATTCAAGACATTACCACTTAATCATGGAATTGGACCAACTTCTCAAGGAGTGTAGCTGTACTTTTTATACTGTGTACATATCCTCTCTGTATTTAAACTATGCTgcgattgtttttatttttgtaaagtTTGTGTTTGTTAGTTTTTATGTGTGTTATGACCAAATTGAGCCTGTCAAACTATAGCTAAGCTTCATCTCAGAGAAAAGATTGGTAATATTTACTTTTGTTTAGCCTGAATCGTGTCCATTCTGTAGCCTGGAAATCACACTCAGTGCATTTGAACATGGTGGGATTGAATGAATTCCAGAAACCACTAATTTAGGAGAGTATTTTTAGTTAATAAAAATGGGTACTAACTCATTTAAAACACCTTTCAATAGGGATGTCACTGTTGCAGATACTGGGATCCAAATACCTTAGGGAGAGTAACAACGATTAACTGTTGAAATTATGAATGGGAAAACCATGAGTTCAGTGGTAAATTGGGTATTGGATGCCATTTGCAAGTGTGTACATATGTTTACACTCAGAATGATCTCTCAAAATCCATCATTTAATACTCCAGTTCTTACATGTGCACTTCTGTAATGTTACACTTCAGGTATGGGCCTTCGTAGGGCTCTGGGTATGGTGCCTAAGATTACAAATCTGTGActgaataaaatattttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582321.2 False 3802 mRNA 0.47 17 13424728 13437553
XM_021582322.2 False 3799 mRNA 0.47 17 13424728 13437553
TU2177989 False 1464 lncRNA 0.40 1 13424549 13426012
TU2177988 True 1278 lncRNA 0.40 1 13424735 13426012

Neighbor

gene id symbol gene type direction distance location
LOC110503778 NA coding downstream 388289 12952684 ~ 13036439 (-)
LOC118944087 LOC106612531 coding downstream 525999 12881774 ~ 12898729 (-)
LOC110503783 NA coding downstream 628673 12787307 ~ 12796055 (-)
LOC110503777 atf5 coding downstream 649485 12770857 ~ 12775243 (-)
LOC110503775 pou2af1 coding downstream 700719 12716285 ~ 12724009 (-)
LOC110503790 LOC107702995 coding upstream 37928 13475481 ~ 13546234 (-)
LOC110503789 NA coding upstream 108784 13546337 ~ 13555170 (-)
LOC110503327 LOC106580965 coding upstream 152314 13589867 ~ 13593563 (-)
kpna4 kpna4 coding upstream 156389 13593942 ~ 13607211 (-)
LOC110503795 ppm1l coding upstream 176252 13613805 ~ 13666475 (-)
G1904275 NA non-coding downstream 16360 13407607 ~ 13408368 (-)
G1904208 NA non-coding downstream 40387 13348315 ~ 13384341 (-)
G1904223 NA non-coding downstream 49156 13375250 ~ 13375572 (-)
G1904220 NA non-coding downstream 52747 13371551 ~ 13371981 (-)
G1904213 NA non-coding downstream 62796 13359869 ~ 13361932 (-)
G1904291 NA non-coding upstream 11962 13449515 ~ 13449741 (-)
G1904299 NA non-coding upstream 26339 13463892 ~ 13464293 (-)
G1904301 NA non-coding upstream 28338 13465891 ~ 13466139 (-)
G1904308 NA non-coding upstream 35543 13473096 ~ 13473323 (-)
G1902875 NA other downstream 1372080 11967842 ~ 12052648 (-)
LOC110503324 LOC106612555 other downstream 1444266 11941794 ~ 11982431 (-)
LOC110503748 LOC106612568 other downstream 1963681 11453367 ~ 11478299 (-)
G1901922 LOC100380637 other downstream 2231969 11190675 ~ 11192759 (-)
rabx5 rabx5 other upstream 279097 13716650 ~ 13719451 (-)
G1904408 NA other upstream 320275 13757828 ~ 13758644 (-)
G1904846 spg20 other upstream 605417 14042970 ~ 14043449 (-)
G1904877 NA other upstream 652169 14089722 ~ 14142728 (-)
G1904919 NA other upstream 742510 14180063 ~ 14214520 (-)

Expression


Co-expression Network