LOC110503789


Basic Information

Item Value
gene id LOC110503789
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 13546337 ~ 13555170 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039404.1
tggcaaaaggtcgcgaagttcaagggggccgaatactttcgcaaggcactgtaaatgttgaATTTTAAAACTGATACTTTCTCACATTATTCAACAAGACAAATTGATATTGAATTAGGTAGGTGAAAGAGGATATGAGTCCCAAGGTACATAACTGCATGGTTTGTGTGAAATGTCTCTGGTTGACAAGCTCTTTGTGTGTCCAGGTGTTAAGTGGTATACTACGAAGCAAGTTAGATCTACTCAGGCTTTTATAAAGCTAGCCATCTTCAGTTAGCTGCACATTCCAGGTCAGGCTTCAGCCGTACTATGAAGGTGGATATTGTGGATATTGCTCATCTGCCTGCCGCTGACTCGGAACAGATGAAGAGGATGATGACACAATCTTTGCAAGAGGGATGGTatctgatttcattggtcctcaactcatggctcagacacttcattcaggataaatggagttagccctgagttagcctgctCGGATtagGTAAGCTCCACCTGGCCTCTTAAGATGGGCCTTATTGAGAAGAGTGTGGAGGCCCACAAAGGAGCTGTGTTAGCCAGGAGATGGTACTACGACGGGACCGCTCTCATCACAGCTGGGGAGGACGGGCCACGTCAAGATCTGGTCTAAGAGTGGCATGCTGAGGTCCACCTTGGCCAGGTAAGATTACTAGGAAAAAAAGTTGCAAACTATCCTTTCAAACACTCAGCTCAGAAATGACTGTATTTCAAAACAAATTTGGAGTGCAGCAGACTCGTAGTGCATAGCCACACTTTGTTTTGAAACAAATGCAGCCACAAATATTGTCCCTTTTAACAATTTCCTGTTTTGTCAGAATGGGGCCCTGTAGTTTTTGTGGTGCAGTTGCTCCACAGTGTAGAGCCAGCATTGcactctctctgtgtgaagaggtgtatgtgagcgtgtgtgtgtgtgtatgctaatCTTCCAGCCCGGTGTTGTCAGCATGCTTCGGTTCAGCTGGCGCCTAGTCGAACTGAACAactgtgctcgcatactcccttaaaataccTTTGCGGCAATAGTTCTGTTTGTCCTTCTTCATATGCCATAGCcaatatacacttcctcaaaatagtcagaattaatcccacgataactcaagaaatctgtaattattTTGACGTATATTCCAAGGACATTTTAGtcgtgcaattttacatctaactaagatgtttggtgcagtatttctcaagtgaaaagaTTTGCATGAAAACAAATGACAACAAATACTTAATTGAAGAATCGCTACTGTTGACCTATCAACAGGGCATAGACTTCGTCTACCTACTTCGGTTTGCCTCAAGAAAAAAATGTTGTGCGCACGAACAGTCGACAAAACCCTCGCTGAAGACCAAATCGAACTTAAACATCccaaaatgtcatcataatatatgcacaaactgttttGGATGGGAAAGCATGTGGACGCCTGCTGGTGCTGTGTGGTTAACACTAACATGTCAGGTCTTGTACTGTACCATTGCTGTACTCAGATCAGCCATGTCCCTGTCTGTAAAGTCACCTACAGGTGGTTCTGTTACTCTCTAACAGAACCAGTCCAAGTACTGAATGTGCTTTTACACACAACATGTATATTGATATTGGCTTTCACTGAATTAATCACTGTACTTATTGAATGAATCATTGAACTAATTTTGAAATCTCAATTTGGAACTAGGATGTTATTTCACTATCCATGTGTGAATGAGGATGCATGCTATTAATCATAGGGGCTGAGTGTGTCACCCTGGTGCTTTCTCAAGCCGTCGGTAGTTCTCTCACACTCTGGTGTGCCCAGTCAGAGGACCTGCTGCTGCTGTGGCTTGGGCCGGGCCTGGGACAGTTGTAATGAGGTCAAACCCATGAACACAGCAACGTGAGTTACAGAGAGATAGACTGCACTGGTGGACATTTTGTAAACATAAGGCAACACAGCCTCCAATTATATTCTCACATACAGACCGCAGTGTTCATTAAGGCCTCTTCTGCTTTTGAGGGCACCTcactggatgagagagagagagagagagaaagggatctGATGAAAAGGGAAAAGGCTTGTCACAGACGGGTACAATACTGTTCATGTGTATTCAGGAAGCCCTTCCCTCTGTGCCATGACACGAAAGTTTCTCTGCTTAAACTGAGCTTTTGGTTGACCCCAAGTGGAGCATGATGCGCTGCCATTAGACAGCTCTGAGAACAGAGGTTATATAGTAACCTAGATAATGTCGTCACCGTACATATAGATAGACTAATACAGTTTGAAGCACTCCAGGATATGCCTCATGTTCTTACAATTTTTTGACTTTCAAATGTACTTCCACAGTcgggatttgtgtgtgtgcgtacagtgTGTGTATTTGAAACTGCTGTAAACTAGGCCGGTGCGATGATCTGAAAGATGGCCTTTGTGTTAACAGTGATTTAGTCCAGCCAGATGATTTAAGATGACAATCTGGCagagggagaggtgtgtgtgtgtgtgtgtgtgtgtgtgttggactatTAGGGTGTAATGCTGCTGGATACAGTTGAAATTGCAGCCAATCCTCCAGTTCCATTTTTATTAAAAGCACCATAAAGTTTTAAAGGTTTATTGGAGTGGAGTTTTATTAAAATCTATAAAAAAGACTCTTAATGATAAATCTCTCTATCCAGTACTCGCATACAGATGGGTCTCTTATTAATTGATTCATTCTGCCATTTGAAATATCTTCAGTGTTCTCAACATTTCTGCGTTGATGTGGAGTGGATGCATTCTGCCAAATGAACGGGCTCTATTTCTCCCTCAGTCCTCTGTTTAATGTGTCCGTCTGTGCTGTTGTGATTGTGAACCATGGCATTGACTGGACAGGCTTGAGAGGGAGTGAGCTGCACAGCCACTGCTGCACGTACAGATTTGTAGAGCGCATGGAGGAACTGGTGGTGTCTCCTAACAGGTGCATCCACACTGCAGATGCATTCTGTGCAGGTGTTGCTCCCCcttatgcagacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgcaggagtCACAGGTACAGCTGGGGGCCATTGTTGTGAGTCTTGAGTGCGATGATGTAACCGTGTCCCATTtgtgtgggagagggggagaaagagagaggggggggggggggggggcagagagaactAGTCTCAGCCGTCTCTCATTGTCAGCCCGCAATCATGTGACCTCTTAGCATTTGTGAGAAACCGCAAGCACCTGGAGCAGGGTTAAatgtcagcctgcctctctctccctctctccctcacacacacacacacacacacacacacacacaaacacacacacacacacacacacacacacacgttttaggCAGGTTTCTCTTAATGCTCAGCTGTCTTGCTGTGACACATAGCCAGGTCTGCAGGATTGAAGCAAGCTTTACATACTAAATCCCATTCCTACAGGCTGTACGAAGTGAACCCTCAGAGTAAGTATGACACTGCTGTGGTGTAGAAATTAGAAATGCAATCTCCTCCAGCTACTGCAGTGTCTCCGTCTCTGTGTTTGTAAGGCATACCAAGCACTTCTCCCTATTTGATAAGGACTGCCTCGAGGCAAACTCTGTGTGATAGCTAGTCAATGCTTTCATGAAACCAGAGTCAAGTAACTAGTGGATCTTCTACTGACAGAATTACTTTATTATATGTCACGCTGTTTGAGGAGGAGATGCAACTGTGAAATGGCCTTAAACAAGTTTCAGTTTTCATAATTTTTAATGGTTGTGTTATGAAAATACTATTATAAAAGTTATTGTTTAATCACATGAACATTGCTCAGCAGTGTGATTCCTCACctatcctggtgtgtgtgtgtgtgtgtgtgtgtgtg
>TU2177968
ctAGTCTCAGCCGTCTCTCATTGTCAGCCCGCAATCATGTGACCTCTTAGCATTTGTGAGAAACCGCAAGCACCTGGAGCAGGGTTAAatgtcagcctgcctctctctccctctctccctcacacacacacacacacacacacacacacacaaacacacacacacacacacacacacacacacgttttaggCAGGTTTCTCTTAATGCTCAGCTGTCTTGCTGTGACACATAGCCAGGTCTGCAGGATTGAAGCAAGCTTTACATACTAAATCCCATTCCTACAGGCTGTACGAAGTGAACCCTCAGAGTAAGTATGACACTGCTGTGGTGTAGAAATTAGAAATGCAATCTCCTCCAGCTACTGCAGTGTCTCCGTCTCTGTGTTTGTAAGGCATACCAAGCACTTCTCCCTATTTGATAAGGACTGCCTCGAGGCAAACTCTGTGTGATAGCTAGTCAATGCTTTCATGAAACCAGAGTCAAGTAACTAGTGGATCTTCTACTGACAGAATTACTTTATTATATGTCACGCTGTTTGAGGAGGAGATGCAACTGTGAAATGGC

Function

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0060026 convergent extension biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0008104 protein localization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039404.1 False 3919 mRNA 0.44 4 13546337 13555170
TU2177968 True 565 lncRNA 0.46 1 13546481 13547045

Neighbor

gene id symbol gene type direction distance location
LOC110503790 LOC107702995 coding downstream 103 13475481 ~ 13546234 (-)
LOC110503787 LOC106612780 coding downstream 108784 13424549 ~ 13437553 (-)
LOC110503778 NA coding downstream 509898 12952684 ~ 13036439 (-)
LOC118944087 LOC106612531 coding downstream 647608 12881774 ~ 12898729 (-)
LOC110503783 NA coding downstream 750282 12787307 ~ 12796055 (-)
LOC110503327 LOC106580965 coding upstream 34697 13589867 ~ 13593563 (-)
kpna4 kpna4 coding upstream 38772 13593942 ~ 13607211 (-)
LOC110503795 ppm1l coding upstream 58635 13613805 ~ 13666475 (-)
LOC110503800 LOC106612904 coding upstream 147192 13702362 ~ 13707142 (-)
rabx5 rabx5 coding upstream 162797 13716650 ~ 13719451 (-)
G1904331 NA non-coding downstream 28892 13517070 ~ 13517445 (-)
G1904308 NA non-coding downstream 73014 13473096 ~ 13473323 (-)
G1904301 NA non-coding downstream 80198 13465891 ~ 13466139 (-)
G1904299 NA non-coding downstream 82044 13463892 ~ 13464293 (-)
G1904260 LOC106580968 non-coding upstream 97 13555267 ~ 13558398 (-)
G1904377 NA non-coding upstream 127025 13682195 ~ 13682431 (-)
G1904379 NA non-coding upstream 129520 13684690 ~ 13684979 (-)
G1904383 NA non-coding upstream 136785 13691955 ~ 13692200 (-)
LOC110503775 pou2af1 other downstream 822340 12716285 ~ 12724009 (-)
G1902875 NA other downstream 1493689 11967842 ~ 12052648 (-)
LOC110503324 LOC106612555 other downstream 1565875 11941794 ~ 11982431 (-)
LOC110503748 LOC106612568 other downstream 2085290 11453367 ~ 11478299 (-)
G1901922 LOC100380637 other downstream 2353578 11190675 ~ 11192759 (-)
G1904408 NA other upstream 202658 13757828 ~ 13758644 (-)
G1904846 spg20 other upstream 487800 14042970 ~ 14043449 (-)
G1904877 NA other upstream 534552 14089722 ~ 14142728 (-)
G1904919 NA other upstream 624893 14180063 ~ 14214520 (-)

Expression


Co-expression Network