kpna4 (kpna4)


Basic Information

Item Value
gene id kpna4
gene name kpna4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 13593942 ~ 13607211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582332.2
TGCCTCTACCACCGGCATTCCCAGTATGCACCGCGGACAGACCAGCAAAAAATAGTCCGGTAACTGAAAGGCCTGAGAAAAAAAGAACTTGAAAGGGGTAGCTGCTAGCTAATTAATTTCTAACGGTGTTAAAACATAGCTAAAATTGCTAATATGGCTGACAACGAGAAACTAGACAACCAGCGGCTGAAGAATTTCAAGAACAAGGGTCGCGATTTGGAGACGATGAGAAGACAGAGGACGGAGGTGGTGGTGGAACTCCGCAAGAACAAAAGGGACGAGCACCTTCTGAAGAGGAGAAACGTGCCCCACGAGGACATCTGTGAGGACTCTGATGCAGACGGAGACTTCAGATCGCAAAACACCTCTCTTGAAGCAATAGTACAAAATGCCACCAGTGATAACCAGGGAGTTCAGCTGAGTGCCGTGCAGGCTGCAAGGAAGCTGTTGTCTAGTGACCGTAACCCTCCCATAGATGACTTGATCAAGTCTGGCATTCTGCCCATCCTGGTGCACTGTCTGGACAGAGATGACAATCCATCTCTACAGTTTGAAGCTGCCTGGGCTTTGACCAACATTGCCTCAGGAACCTCAGAGCAGACCCAGGCAGTGGTCCAGTCCAATGCTGTgccactgttccttaggctgctGCACTCTCCTCACCAGAACGTGTGTGAACAGGCGGTCTGGGCCCTGGGCAACATCATAGGCGACGGTCCCCAGTGCAGGGACTATGTGATCAGTCTTGGTGTGGTGAAGCCCCTGCTGTCCTTCATCAGCCCCTCTATCCCCATCACCTTCCTCCGTAACGTCACCTGGGTCATGGTCAACCTCTGCCGCCACAAGGACCCACCACCACCCATGGAGACCATCCAGGAGATTCTTCCAGCTCTCTGTGTGCTGATCCACCACACTGATGTTAATATCCTGGTGGACACGGTGTGGGCTCTGTCCTACCTGACAGACGCTGGCAACGAGCAGATTCAGATGGTCATCGACTCGGGCATCGTTCCCAACCTGGTGCCCCTGCTTAGCCACCAGGAGGTCAAAGTCCAGaCTGCTGCTCTGCGGGCGGTGGGCAACATAGTGACTGGAACAGATGAACAGACCCAGGTGGTGCTCAACTGTGACGCCCTGGGacacttcccctctctcctcacacaccccaAGGAGAAGATCAacaagGAGGCAGTGTGGTTCCTGTCCAACATCACAGCAGGCAACCAGCAGCAGGTGCAGGCCGTCATCGACGCCAACCTGGTACCCATGATCATCCACCTTCTGGACAAGGGAGACTTTGGAACACAGAAAGAAGCAGCCTGGGCCATCAGCAACCTGACAATTAGCGGGAGGAAGGACCAGGTGGCGTACCTGATCCAGCAGCAGGTGATCCCTCCCTTCTGTAACCTGCTGACAGTGAAGGATGCTCAGGTGGTGCAGGTGGTCCTGGACGGACTCAGCAACATCCTCAAGATGGCCGACGACGAGGCCGAGACCATCGCCAACCTCATCGAGGAGTGTGGAGGTCTGGAAAAGGTGGAGCAGCTCCAGAATCATGAGAATGAAGACATCTATAAACTGGCGTATGAAATTATTGATCAGTTCTTCTCATCTGATGATATTGACGAAGACTCCAGCCTGGTTCCGGAGGCGATCCAGGGGGGAACGTACAGCTTCAATTCCTCCACCAACGTGCCAACAGAGGGGTTCCAGTTCTAGAAGGCATCTCGGGAGTCTGGAGTTTTGTTCGCGATGCAGCACTCTGTTCAACATAAAACAAAttaggagaaaaagagagcgaaagagtgtGAGAGAAATTAGATCCATTGTGCTTGGCTCGTGGGATCCATGGCTGCATCTTATCTGAGAATGTGTGGATTTCGTTTGGCATTCCGGGGGAACCAGCCCAAATGAAGTTTGAGATGGCGAGTGGGTGCGAGTGAGTGAGTGGCTACATGTTGCAAAAAACAAACATCTACATCGAATGCGTTGAGACACGCCAAGTAACTTCCATGTTATTGGAGCTGTCGACTAAAACGGAAAACTACTACAATGACAACAAAAATGCGGTGTCAGCCCGGGGAGAACCAAATACATCAAAATCAAGAAATTGAGGCAACAAATCACAAAAACACAAAAGGAAAACCAACAAAACAAGCATAAGATGAACCATATGACAATTCTGCGGTCCTCCGACCGGAGGGGGCACCACCTGTGCGCCCATCCCCAAATCGGCCACGCCATCAGACGTGTGTGAATGGACCCATTGTGTATGAATGTCTGGACTCAGTGCTGAGGAGCCAGGTTCATCTCCTCCAACCAGAGGCCCTCGATGgggcatccccccccccccccccccccccccgcggaGGTGGGCAGGGCCAGAGTCCAGCTGCGCTTGTGCGAGAGAATGGacgagtggtgtgtgtgtgcgcgtgtctggAGAGTGCAAGAAGACTGGATGTGAACgcatgcagagagaaaaaaatacataaGAGTAACAAAACCGAGAAGCGCAACCGAAGGAAAATACCAGAAGAAATTCTGCCTTAAGAGGCAGATACAAATCCCTGAAAAGAAgaactttgaaaaaaaaaaagacatcatCATAAGGGTTTTGATTGTTAAGTTAGTATTAATTAACACTGGACAATGCTTTTGGCAGGTGGAGCAGTGGGTGCATTGTATTCAGATGCATTTGGTGGCTTTTCTTTTTGCATCCAgtgtacaattttttttcttttttttttcctgCTTTTACTTTCATTGCTTATGGTGATAAGGATCATATTCCACCTTCCCACAATAACCATACCTTTGCACCAGATATGGGGTTGATGCTGTGAAATTCTGACATGACTATTGTCAACCAAATGACTTATATACTCCCCTAGCATGATTTgatgtttttttctttctcttgaAGCAAAAATCACTGCTTTGCAGTATTGTTGCCATAGCTTTGAGCTTTGACTTAACATAAGGGGGAATGAAAAATGGCAGTTATGTAACATCGATTCATAACCTTTGCATGTACTAAACTATAGCACAGTTAATTACAACTTTTTTTAGTTTCTTTAGGCTGTTTACACAGTGTCATTTAAACATTTTTGTAAACTGTGCTGTTTTAAATGTTACatgtctccccctcccctactGACCTAAATTTCTGATTTGAAGATTAAATCTGAACAGTTTTGCACATGTACTGCAGAGTGAGAGGCCTGAAGTTGTTCAGAAGGTGTGGTTAGACTCAAAATCATACCTGCTAACACCAACAATATGCATCATCCAACCACAATCTTTGTTTTATATTCAGTTGTAGCCATGATAAACTCATGTTGAGCCATTTTAGTGAGTGAGAAACTTTTAAGGGGGGCAATAATTGTTTTGCCTCTGATGTTGAGGCACCCCTGAGTTGGGGAAAGGTAAGTATCGGGGATTGGACCCCCAAGCCTCGACAAGGTGTCTCAATGATACATGTTGAGCCTTATTCCTTAATCTAAAACTCATGAACAAGTTTGCAGTACCTCCCAACCCCTTGCTCCTTCCCCCTCTTTACCATTAGGTGCACCATCTTCCCCTTCTGTTgaacatagttttttttttttagcagcaGCAGCATTCCTTGTTAGCAAAGATGTGGTTtcaaaaaaaaatggaatggaaGAAGGTGGTTATCCTGTTGAGTTAGATCTACAGGCTAGGTTGTCTTCAAGAAAATAAATAGTGAAACCTA

Function

symbol description
kpna4 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Orthologous to human KPNA4 (karyopherin subunit alpha 4).

NR:

description
PREDICTED: importin subunit alpha-3 isoform X1

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K23583 KPNA3_4; importin subunit alpha-4/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582332.2 True 3739 mRNA 0.48 17 13593942 13607211

Neighbor

gene id symbol gene type direction distance location
LOC110503327 LOC106580965 coding downstream 3153 13589867 ~ 13593563 (-)
LOC110503789 NA coding downstream 38772 13546337 ~ 13555170 (-)
LOC110503790 LOC107702995 coding downstream 47708 13475481 ~ 13546234 (-)
LOC110503787 LOC106612780 coding downstream 156389 13424549 ~ 13437553 (-)
LOC110503778 NA coding downstream 557503 12952684 ~ 13036439 (-)
LOC110503795 ppm1l coding upstream 6594 13613805 ~ 13666475 (-)
LOC110503800 LOC106612904 coding upstream 95151 13702362 ~ 13707142 (-)
rabx5 rabx5 coding upstream 110756 13716650 ~ 13719451 (-)
LOC110503330 LOC106612760 coding upstream 204441 13811652 ~ 13812593 (-)
LOC110503333 LOC106612769 coding upstream 280308 13887519 ~ 13888439 (-)
G1904260 LOC106580968 non-coding downstream 35544 13555267 ~ 13558398 (-)
G1904331 NA non-coding downstream 76497 13517070 ~ 13517445 (-)
G1904377 NA non-coding upstream 74984 13682195 ~ 13682431 (-)
G1904379 NA non-coding upstream 77479 13684690 ~ 13684979 (-)
G1904383 NA non-coding upstream 84744 13691955 ~ 13692200 (-)
G1904384 NA non-coding upstream 89771 13696982 ~ 13697375 (-)
G1904386 otol1 non-coding upstream 91870 13699081 ~ 13700576 (-)
LOC110503775 pou2af1 other downstream 869945 12716285 ~ 12724009 (-)
G1902875 NA other downstream 1541294 11967842 ~ 12052648 (-)
LOC110503324 LOC106612555 other downstream 1613480 11941794 ~ 11982431 (-)
LOC110503748 LOC106612568 other downstream 2132895 11453367 ~ 11478299 (-)
G1901922 LOC100380637 other downstream 2401183 11190675 ~ 11192759 (-)
G1904408 NA other upstream 150617 13757828 ~ 13758644 (-)
G1904846 spg20 other upstream 435759 14042970 ~ 14043449 (-)
G1904877 NA other upstream 482511 14089722 ~ 14142728 (-)
G1904919 NA other upstream 572852 14180063 ~ 14214520 (-)

Expression


Co-expression Network