rabx5 (rabx5)


Basic Information

Item Value
gene id rabx5
gene name rabx5
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 13716650 ~ 13719451 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160674.1
GGGTGACTACGTAAACAAACTGGTCTGTCAGACGGGTGGGTAGCAGATGGTGCCAATTGGCTGCATAAAAAAATTACATATATCTACACTCAATAATCTTTCTGAAAAGGTAATGAGTCGCAGAATGTTGTTAGCTAACGAAATTGTTTGTCAATTTTGTTGGGTCTGGAATTACTGTCaccctagctagctaacgtcaaccgcaaactagctagctagctaatgttagcttctAGTAGTGAGCCAAACCCTAGTTCAATGTATCTCTACTCTGCTAAGGACCCAGTGGTCAGGTGTGTCCATTGTAGAATACTTAATTATGGTATTTTTTGTAGCTAAGTTTACTGTTAATATTTAGCTACCAGAAGAAGCCTAGCTAGCTTTGTCATGTCATTGTGTCGCGTTTTTCGTGAATTtagagctagctaatgttagcaagctAGTTAGAGTTTAGCTAAGCCCATTACATTGCATTACATCGTAGTAGGGATAGTTATACGAATATTTGGTTGTAAAGTAGCCAACTAGCGTGTTTATAAATCAGGATGGTTAGCTACTAATAACGTTGTAATGTAACGTTGTAATGTGGCTTCAAACAAAGTAAAGTGTAGGGCAGCTACACTATTGGGATTTGACACAGCTAGAAGGCCATAAACATTTTCACCAGTGTTTGTGGTCATCCATTAAATTCCTCCTGTGTTGATTTTCGTATCATGCATTCCCAATGTGAGTCGGGAGTCAAAATCATCAGGGATAGGCAGATTCTTAGGGGTTCAAACTCTTGTCAGATTTCCAGTGTTGACCTTAATTTTACGGTGGTAAAGGTGTAAACACTGCCATATGAAATCATATTTTGATACGCACAGGAATTCACTAAGATTTTCCGTGTGTGTATTGAAATGTGTCTTTACGCTAGCTACCTCTattaaacatacatttttatCAAATACCTCAACCTGAATGTGGCCCATAGTGTGTAGGCATTCAACTTTGTCAAAGTCctgataaataaaaaatagccATCAAGTTTGATGTAGGCCTACTTCTGACTGTGGATCTTTCTACCATTCAGTCTTGTCATTTTCCTGTTATTCCCAGCCGTATCCACGCTAGCCGTGAGGGATGAGCCACCGGTCGGAACGTCGTGGGATCCATGTGGACCAGTCAGAGCTGCTGTGTACGAAGGGATGTGGTTTCTATGGCAACACGGCCTGGCAGGGCCTCTGCTCCAAGTGCTGGCGGGAGGAGTACCAACAAACCAGACACAAACAGATCCAGGAGGACCATGCACTGGCAGAGAGGTGTGGTTGTCAATCTGAGCAAACTTGTTTTGCATCAACCCCCAGCTGCTGGGCGGAGGTAGCACTCGATTTTAAATCTAGGAGCCCGGTGGCAAACACTGAATGCCCTGCATAAAATTGAGGGGTGCAGTcgaaaacaaaacaataacaaaatgcaGCTGTAACTTTTGATCAttggtc
>TU2178084
AGAAGGGTGACTACGTAAACAAACTGGTCTGTCAGACGGCCGTATCCACGCTAGCCGTGAGGGATGAGCCACCGGTCGGAACGTCGTGGGATCCATGTGGACCAGTCAGAGCTGCTGTGTACGAAGGGATGTGGTTTCTATGGCAACACGGCCTGGCAGGGCCTCTGCTCCAAGTGCTGGCGGGAGGAGTACCAACAAACCAGACACAAACAGATCCAGGAGGACCATGCACTGGCAGAGAGGTtacagaaggaggaggaggcagcgtaCGCTAACAACCACCAGGGGGCAGCCCAGCCCCAGCCTGCCATCGCACCCTTCAGCAAGTTTGAAGAGAGGAAAACCAAGGAGAAGTCACGTAAAGTCAACACAATGACTAAGTTTTTCACTCCCTCAACAAAGACACCGCCCAAGAAAGGTAGGGTCCAAGTCTTTGAGATAGGGTTTATAGTGTTTTCTCTACCATTACTTGAGGTATGAGCAGATCCAAACCAAAACTACCTTCCCTCTGCATAATATTGGTGTACAGTTCCTCTTTCCCCGCTCTTTCAGAATTCTGCTCCACTACCACTCTCTCCCCCCAGTCACTGTGGAGGAGGTCACATGGGGCATCCAGCTAGAATTCCTTagattttcaacctctccctgactcagtctaatacctacagtgccttcagaaaggattcataccctttgacttattccacattttgctgtgttacagcctgaattcaacatttattaaatatgttttttcttacccatctacacacaataccccataatgataaagtgaaaaacatattttcaatGTATTGATAATGAAATAGAGAAGtatctttacataagtattcacacccctgagtcaatacattttagaatcacctttggcagcgattacagagactttctgggtaagtctctaagagctttgcacacctagattgtacaatatttgcccattataatttttttcaaagttcttcaagctctgtcaaattggttgttgatcatcgctagacaaccattttcaaatcttgccatagattttcaagcagatttaagtaaaCTATAActcgaccactcaggaacattcactgtcttcttggtgtGCATCTCCATTGTAGatttgttcttgtgttttaggttattgtcctgctgaaaggtgaattaatctcccagtgtctggtggaaagcagactgaaccaggttttcctataggattttatctgtgcttagctccattcattttcttttttttcttctgaaaAACAACTCGGtctttaacgattacaagcataacataacatgatgcagccaccactatgcttaaaaatatggagagtggtaatgtgttgcattggatttgccCCTAACAGTTTTACTTCTGTGccatgatgc

Function

symbol description
rabx5 Predicted to enable GTPase activity. Predicted to be involved in Rab protein signal transduction and vesicle-mediated transport. Located in synapse. Is expressed in adult head; eye photoreceptor cell; and larval ventral nerve cord. Orthologous to several human genes including RAB36 (RAB36, member RAS oncogene family).

NR:

description
rab5 GDP/GTP exchange factor-like

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160674.1 False 1481 mRNA 0.42 1 13717967 13719447
TU2178084 True 1401 TUCP 0.43 3 13716650 13719451

Neighbor

gene id symbol gene type direction distance location
LOC110503800 LOC106612904 coding downstream 10825 13702362 ~ 13707142 (-)
LOC110503795 ppm1l coding downstream 51492 13613805 ~ 13666475 (-)
kpna4 kpna4 coding downstream 110756 13593942 ~ 13607211 (-)
LOC110503327 LOC106580965 coding downstream 127178 13589867 ~ 13593563 (-)
LOC110503789 NA coding downstream 162797 13546337 ~ 13555170 (-)
LOC110503330 LOC106612760 coding upstream 92205 13811652 ~ 13812593 (-)
LOC110503333 LOC106612769 coding upstream 168072 13887519 ~ 13888439 (-)
LOC110503334 LOC106612769 coding upstream 175838 13895285 ~ 13896205 (-)
LOC118943997 LOC106612769 coding upstream 183592 13903039 ~ 13903959 (-)
LOC110503335 LOC106612769 coding upstream 193910 13913357 ~ 13914277 (-)
G1904386 otol1 non-coding downstream 17391 13699081 ~ 13700576 (-)
G1904384 NA non-coding downstream 20592 13696982 ~ 13697375 (-)
G1904383 NA non-coding downstream 25767 13691955 ~ 13692200 (-)
G1904379 NA non-coding downstream 32988 13684690 ~ 13684979 (-)
G1904377 NA non-coding downstream 35536 13682195 ~ 13682431 (-)
G1904389 NA non-coding upstream 6960 13726407 ~ 13726650 (-)
G1904391 NA non-coding upstream 8338 13727785 ~ 13728062 (-)
G1904393 NA non-coding upstream 10581 13730028 ~ 13730265 (-)
G1904396 NA non-coding upstream 15312 13734759 ~ 13740554 (-)
G1904398 NA non-coding upstream 21751 13741198 ~ 13741519 (-)
LOC110503775 pou2af1 other downstream 993970 12716285 ~ 12724009 (-)
G1902875 NA other downstream 1665319 11967842 ~ 12052648 (-)
LOC110503324 LOC106612555 other downstream 1737505 11941794 ~ 11982431 (-)
LOC110503748 LOC106612568 other downstream 2256920 11453367 ~ 11478299 (-)
G1901922 LOC100380637 other downstream 2525208 11190675 ~ 11192759 (-)
G1904408 NA other upstream 38381 13757828 ~ 13758644 (-)
G1904846 spg20 other upstream 323523 14042970 ~ 14043449 (-)
G1904877 NA other upstream 370275 14089722 ~ 14142728 (-)
G1904919 NA other upstream 460616 14180063 ~ 14214520 (-)
G1905348 NA other upstream 900216 14619663 ~ 14621372 (-)

Expression


Co-expression Network