LOC110503799 (LOC106612902)


Basic Information

Item Value
gene id LOC110503799
gene name LOC106612902
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 13719961 ~ 13723905 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582336.2
TACGGGAAGTTGCTAAGACTTTTTATGACTCCAGTAGTCTAGGTTGAAAAGCATTTGGGATGATCGAGTATCATCAAGAGAACGCATAGGCATATCTTTATTCTATGCGAAATAGGCATATCTTTATTCTATGCGAAATAGGCATATCTTCATTCTATGCGAAATAGGCATATCTTTATTCTATGCGAAATAGCTAGCAGAAAGAACAGAATAGCTTCATTCACCTCATCTAAGGAATGGCAGACAAGTTGCTCTCCAAGGCTCGGAAGACATTCATAGACAGTGTGACGAAGCCAGTGATCAAGCAGCTCCTGGATGACCTTTTGGAGGACAAGGTGCTGAACGATGAAGAGACAGAATCGGTGACGGAGGAGAACAGCACTAGGGCAGAGCAGGCACGATGCCTTATCGATATGGTGCGGAAGAAAGGGAGCAAAGCCAGTGACAAGATGATTGCCAGAGTTCAGGAGAGAGATCCTGGACTTTATGACAAAATGGGTCTGGCCCCCACACCATCATCGCCCCAGTTATCACAGCAGGAGGAGCAGCCAGTGTCCTCTGTCCTCACCCCCAGCACAAATGACTTTAAGAAGGACATTCTTCAGAGGAAGGGTAGCGAGATTTACCTTCCAATGGATAAGTCTGGTCGGAAGCGTCTGGCCCTGCTCATAAACAACGTGGAGTTTGATGATAAGAACATGCTGAGACGAGGGGCAGAGAAGGACGAGGAGGACGTGGAGAGGCTTCTCAGGGATCTGGGATATGATGTGGTGAAACACAGAAACCTGTCTGGACAGGAGATGGACGAGGCTGTGAAAGCGTTCTCTAAACGTGAGGAGCACTTATTGTCGGACAGCGTCTTCGTGGTGATGATGTCTCACGGGGAGCTGGGAGCCATCATGGGTGTCCATTACAAGAAAGGGGACCCTAATCTTGACATCTTCCCCATCAACAACATCTTcacacacctgaacacagagAACTGCAAAGCACTGATTAACAAACCCAAAGTCATCCTCATTCAGGCCTGCAGGGGAGGCAAGGATGGGTCTGTTTGGGTCAGTGACACAGTGCCTGGGTCCAGCCTTGACCTGGGGTTAGAGAGTGACTCATTTAGGAGGGAGCACAAAGAGAAGGACttcatctccctcctgtcctgcacACCAGATACTGTGTCCTACAGAGATCCAGAGATGGGCACCCTTTTTGTCCAACGCATCATGGAGACATTCAACACCTATGCCTGTGATGATCATATAGAAGAATTGTTCAGGAAGGTCATGGGACGCTTTGAAGATTTCCCCAGACAGATGCCGACCAAAGACAGAGCCACTCTAACAAAGCACTTCTACCTCTTCCCAGGCCTCTGAGAAGTTATGATGATTGATTCATTGTACTGTAATCACAATGGAGGAATAAGGGAGCAGCATATTTTCTGTTATTTTGTATGAAAGTGTTTGGTAGACACTCCTTTTAAGATCATCACCAGTATGTTTTAAATTTATACTTATAATGAACCTTTTAACATTATTTTATCTGCAAATTGTTTATAATCTGCAAATGATAATATCCTCCTGTAGAGCTACTGGGTAGCCTATGTTGTcttgtgccagccctgctctaacacacctgattcggCTAATCAACGCCAAGATGTGTTAAAGGTGTGTTAGATCAGAGCTGGAACAAAAACGTATTGGGTACTAGGTTACCCAGTAACTAGATTGGCCACTCCTGTTTTAACATTTGGAAGATAAGTAAAATAAGTCTCTGTGACAAAAGCAATATTTGCCGAAATAAAAATATTTCACTGCACTCAAAAA
>XM_036961903.1
TGCTATGGCCATCAACTCCGATTACAGAGCGCTCTCGTTTTAGtctgccagagcgcagaataactgacgaatttatGAACGCTCAACATGCTTTGAATATGACGGGAGTCAGTAAACATCggcaagctagctaactttagccagttagctagggtgcttgactgccattgtgaggtcagaacgctcggatcaaccctactcctcggccagatcGAAACGCTCTGATATTAACGAACGTCCAGAGCGCAGTCTGaacgcactctggcactccagaatgaatttacgaacacaccccaAACAAGTTGCTCTCCAAGGCTCGGAAGACATTCATAGACAGTGTGACGAAGCCAGTGATCAAGCAGCTCCTGGATGACCTTTTGGAGGACAAGGTGCTGAACGATGAAGAGACAGAATCGGTGACGGAGGAGAACAGCACTAGGGCAGAGCAGGCACGATGCCTTATCGATATGGTGCGGAAGAAAGGGAGCAAAGCCAGTGACAAGATGATTGCCAGAGTTCAGGAGAGAGATCCTGGACTTTATGACAAAATGGGTCTGGCCCCCACACCATCATCGCCCCAGTTATCACAGCAGGAGGAGCAGCCAGTGTCCTCTGTCCTCACCCCCAGCACAAATGACTTTAAGAAGGACATTCTTCAGAGGAAGGGTAGCGAGATTTACCTTCCAATGGATAAGTCTGGTCGGAAGCGTCTGGCCCTGCTCATAAACAACGTGGAGTTTGATGATAAGAACATGCTGAGACGAGGGGCAGAGAAGGACGAGGAGGACGTGGAGAGGCTTCTCAGGGATCTGGGATATGATGTGGTGAAACACAGAAACCTGTCTGGACAGGAGATGGACGAGGCTGTGAAAGCGTTCTCTAAACGTGAGGAGCACTTATTGTCGGACAGCGTCTTCGTGGTGATGATGTCTCACGGGGAGCTGGGAGCCATCATGGGTGTCCATTACAAGAAAGGGGACCCTAATCTTGACATCTTCCCCATCAACAACATCTTcacacacctgaacacagagAACTGCAAAGCACTGATTAACAAACCCAAAGTCATCCTCATTCAGGCCTGCAGGGGAGGCAAGGATGGGTCTGTTTGGGTCAGTGACACAGTGCCTGGGTCCAGCCTTGACCTGGGGTTAGAGAGTGACTCATTTAGGAGGGAGCACAAAGAGAAGGACttcatctccctcctgtcctgcacACCAGATACTGTGTCCTACAGAGATCCAGAGATGGGCACCCTTTTTGTCCAACGCATCATGGAGACATTCAACACCTATGCCTGTGATGATCATATAGAAGAATTGTTCAGGAAGGTCATGGGACGCTTTGAAGATTTCCCCAGACAGATGCCGACCAAAGACAGAGCCACTCTAACAAAGCACTTCTACCTCTTCCCAGGCCTCTGAGAAGTTATGATGATTGATTCATTGTACTGTAATCACAATGGAGGAATAAGGGAGCAGCATATTTTCTGTTATTTTGTATGAAAGTGTTTGGTAGACACTCCTTTTAAGATCATCACCAGTATGTTTTAAATTTATACTTATAATGAACCTTTTAACATTATTTTATCTGCAAATTGTTTATAATCTGCAAATGATAATATCCTCCTGTAGAGCTACTGGGTAGCCTATGTTGTcttgtgccagccctgctctaacacacctgattcggCTAATCAACGCCAAGATGTGTTAAAGGTGTGTTAGATCAGAGCTGGAACAAAAACGTATTGGGTACTAGGTTACCCAGTAACTAGATTGGCCACTCCTGTTTTAACATTTGGAAGATAAGTAAAATAAGTCTCTGTGACAAAAGCAATATTTGCCGAAATAAAAATATTTCACTGCACTCAAAAA

Function

NR:

description
caspase-1-like

GO: NA

KEGG:

id description
K01370 CASP1; caspase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582336.2 False 1823 mRNA 0.45 8 13719961 13723905
XM_036961903.1 True 1877 mRNA 0.47 8 13720518 13723905
Loading

Neighbor

gene id symbol gene type direction distance location
otol1b LOC106612904 coding upstream 17591 13697656 ~ 13703991 (+)
nmd3 nmd3 coding upstream 40176 13666552 ~ 13679785 (+)
LOC110503797 NA coding upstream 106690 13605655 ~ 13613307 (+)
LOC110503326 LOC106580963 coding upstream 135533 13559526 ~ 13584428 (+)
LOC110503788 cssa09h3orf80 coding upstream 238740 13478626 ~ 13481221 (+)
LOC110503328 LOC106612776 coding downstream 37269 13761174 ~ 13762106 (+)
LOC110503329 LOC106612776 coding downstream 64836 13788741 ~ 13795407 (+)
LOC110503331 LOC106612770 coding downstream 115478 13839383 ~ 13840333 (+)
LOC110503332 LOC106612769 coding downstream 122238 13846143 ~ 13847075 (+)
LOC118943993 NA coding downstream 123406 13847311 ~ 13853633 (+)
G1903909 NA non-coding upstream 134138 13585125 ~ 13585823 (+)
G1903926 NA non-coding upstream 175028 13520389 ~ 13544933 (+)
G1903925 NA non-coding upstream 200865 13518881 ~ 13519096 (+)
G1903990 NA non-coding downstream 4346 13728251 ~ 13728463 (+)
G1903998 NA non-coding downstream 17318 13741223 ~ 13741471 (+)
G1904477 NA non-coding downstream 140111 13864016 ~ 13864275 (+)
G1904478 NA non-coding downstream 141298 13865203 ~ 13865449 (+)
G1904495 NA non-coding downstream 152087 13875992 ~ 13876262 (+)
G1903984 NA other upstream 14267 13704202 ~ 13705694 (+)
LOC110503785 LOC106612913 other upstream 617738 13080371 ~ 13417857 (+)
LOC110503782 LOC106612540 other upstream 843145 12858737 ~ 12881204 (+)
G1903195 LOC106591448 other upstream 1172104 12542360 ~ 12547857 (+)
G1903192 NA other upstream 1175583 12538721 ~ 12544378 (+)
G1904563 NA other downstream 272342 13996247 ~ 13998613 (+)
G1904683 NA other downstream 545379 14269284 ~ 14269700 (+)
G1904704 LOC106612894 other downstream 581282 14305187 ~ 14305479 (+)
LOC110503347 LOC106612880 other downstream 997772 14721462 ~ 14729123 (+)
G1905925 NA other downstream 1528554 15252459 ~ 15253787 (+)

Expression

LOC110503799(LOC106612902) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110503799(LOC106612902) Expression in each Bioproject

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LOC110503799(LOC106612902) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
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Co-expression Network