LOC110503330 (LOC106612760)


Basic Information

Item Value
gene id LOC110503330
gene name LOC106612760
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 13811652 ~ 13812593 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581696.2
ATGACAATAGAGTTCAACTCCTCCCAGGAGATAGTGTTTGTGCTGCATGGACTGAACGTGACACAGATAAACAAACACATCTACTTCTCATTTACTCTCATCCTATACATCTTCACCATTTTTGTGAATCTGATACTGATCGTTACCATTTTTCTGGAGAAAATGTTGCATGAACCTATGTATTTATTTCTCTGTAATCTGTGTATTAATGGTATCTATGGCGCTTCAGCTTTCTACCCAAAGATACTTTATGACCTTTTATTTGACTCTCATGTGATAACATACATTGGGTGCCTGACCCAGATATTGGTAATCTACTCCTATGCTTTCTGTGAATTCACCAGCTTGACAGTGATGGCATATGACAGGTATGTTGCCATCTGTAAACCGTTACAATACCACTCTATCATGACTACTCGAAAAGTGTGGACCCTGCTTCTTCTTACGTGGCTTTTCTCATGGCTAGAAAGTGGCTTCGGCATGGGAATAACAGCTAAATTACCCCTCTGTGGCCTCAACATCGATAAACTCTACTGCTCAAACTGGGCGGTCGTGAAGCTCTCATGTGTTGACACCACTCTGAACAACCTTTACGGCTTCATTGCCACTTTTTCTCACATCTCTCAAATGATACTCATCGTGATTTCTTATGTGAACATCATCAAAGCATCTTTGCGTTCCCGGGCGGAGAGGAAGAAGTTCATGCAGACCTGTCTGCCTCATCTGATCACCCTCACTAACTTCACCATATCCCTCACCTTCGATGTGATGTTTGCTCGCTACGGCAGCAACACCAGCCTGCTGGCCCTGAGGAATATCATGGCGGTGGAGTTCCTTGTTGTGCCTCCTCTGGTGAACCCTATCATATACGGGATGAAACTCACTCGGATTCGGAATAGAGTTGGAAGGATGTTTAAACTTAAAGTTGCTGCCTTGACCTAA

Function

NR:

description
LOW QUALITY PROTEIN: olfactory receptor 4S1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581696.2 True 942 mRNA 0.43 1 13811652 13812593

Neighbor

gene id symbol gene type direction distance location
rabx5 rabx5 coding downstream 92205 13716650 ~ 13719451 (-)
LOC110503800 LOC106612904 coding downstream 104510 13702362 ~ 13707142 (-)
LOC110503795 ppm1l coding downstream 145177 13613805 ~ 13666475 (-)
kpna4 kpna4 coding downstream 204441 13593942 ~ 13607211 (-)
LOC110503327 LOC106580965 coding downstream 220863 13589867 ~ 13593563 (-)
LOC110503333 LOC106612769 coding upstream 74926 13887519 ~ 13888439 (-)
LOC110503334 LOC106612769 coding upstream 82692 13895285 ~ 13896205 (-)
LOC118943997 LOC106612769 coding upstream 90446 13903039 ~ 13903959 (-)
LOC110503335 LOC106612769 coding upstream 100764 13913357 ~ 13914277 (-)
LOC110503336 LOC106612769 coding upstream 113378 13925971 ~ 13926900 (-)
G1904423 NA non-coding downstream 25455 13781341 ~ 13786197 (-)
G1904398 NA non-coding downstream 70133 13741198 ~ 13741519 (-)
G1904396 NA non-coding downstream 71098 13734759 ~ 13740554 (-)
G1904393 NA non-coding downstream 81387 13730028 ~ 13730265 (-)
G1904391 NA non-coding downstream 83590 13727785 ~ 13728062 (-)
G1904486 NA non-coding upstream 59000 13871593 ~ 13872018 (-)
G1904829 ints4 non-coding upstream 199565 14012158 ~ 14012456 (-)
G1904836 NA non-coding upstream 216178 14028771 ~ 14029064 (-)
G1904838 NA non-coding upstream 218375 14030968 ~ 14031172 (-)
G1904841 NA non-coding upstream 220565 14033158 ~ 14033476 (-)
G1904408 NA other downstream 53008 13757828 ~ 13758644 (-)
LOC110503775 pou2af1 other downstream 1087655 12716285 ~ 12724009 (-)
G1902875 NA other downstream 1759004 11967842 ~ 12052648 (-)
LOC110503324 LOC106612555 other downstream 1831190 11941794 ~ 11982431 (-)
G1904846 spg20 other upstream 230377 14042970 ~ 14043449 (-)
G1904877 NA other upstream 277129 14089722 ~ 14142728 (-)
G1904919 NA other upstream 367470 14180063 ~ 14214520 (-)
G1905348 NA other upstream 807070 14619663 ~ 14621372 (-)
G1905324 LOC106612883 other upstream 809602 14622195 ~ 14655274 (-)

Expression


Co-expression Network