LOC110503814 (LOC106612890)


Basic Information

Item Value
gene id LOC110503814
gene name LOC106612890
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 14567016 ~ 14585375 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582358.2
aggagCTTCAAAACAGTTCAAATTGAATGAGGGCACCTGTGCTCCATGATCTATTGCCGAGTTTTCGCGGGAGATATTATAAGGTATTCTACTGTTCCGTGTCGTAGGCTACTAGATGACGGACGGATTCAACCATCTGACTGGATAGGGGTGTTCCACAATAAGATACGTTGTATGTTGTACGTTTTGTTTTTAGTTGTGTCATGCAAATGTTTTATAGTATTATAATATTGTGCTACAATTAGGCATATTTCGTATACTCCTATTGTTAATTTAGATAGTATTCCTTCACCCCATCAACGAAACGGGGGTTGCTGTCCTCTTTTGAGTTAAGCGTTCCTGTCCTGCTCCGGGGAGTGATGTCACTGATGGAATGTGATCGTTTCGCGAATCTCCCACCCTCACGAGTCAGTGTACTTTTCATTGCTTTTTTAATCATAAAACAGCTTGTTCCGCATGGACAAAGACGATTGTTCGTAGAGAGACTATCAAAGAAAAGTACATTTTCGCTGTTAGTCTGCATTCTAGGACAGTTGCTCAATGGTTTATCATTAAACATTTTGTGGATCGAACAACATAGTTGGCTATATTTCAACTGGGTGACAATGATATAATGTCTAGTAGCTAAATGTTGACCTTTGTGACGTACGCTTTGCTGTAAACTAGAACGTCGACATTTATTTTCCTAAAATACCCCATTTTGTCGATTGAAGATAATCAGGACAGGGCTGCAGTCGAGCAAGGACAATACATTTTGTTTGCATTTGATCTACAGCGACATACAACAATGTTAACCCAGagaaagagaaaacgCACTGTGGAGGACTTCAACCAGTTTTGCACCTTTGTGTTGGCCTATGCTGGATACATCCCCTATCAAACAGAGGATTGGTGGTGTAGTGACAGCAAGCCCAGTGACAGCAACCCCTGCAGCAGCAGTCACAGTACCAGTCCATGGGCCTACCAGTCCTCTCCTAACTCAGACTGTGGCTCCTCCACTCAGAGCcagaaggagaaagggaaggagtTGAAGAGGAGGAGGTCAGACAAGAAGCCAGCCGGGCCTGGCCAGGGGGAGAAGAAGCTTAGAGGAGGAAGTGCCAAAAAGTCTCCTAATAACAAACAGGCTGCCCCTACATCAACAGTCAGCAGAATGCCAGAGCTCCATGAGCAGCACCAGCCCCAGTCTGAACGGACCAACCTCAACAGCTGTCCTACTGACAACAAAACACATCCTCTGATAGCTCCGAAATGTGACCATGACTGTAAACTTTCCCAATCTTCCCTGACTCAACTCTTCCCTGAAGCCACCTCcagcagctctctgtctgtccacaGGGACAAGATCAACACCGGTCAGACACACACGCCAGACCCCAACAGGTCAGCTGGGAAAATGAATGACTCTACAACCCCTCAGAAGACAGGAAGTGAAGAACTGGAACAGGAAGTGACCGAACAGCCTGTTGACATGACAACGACAAGCTGTGAGACGGGGAAGAGCTGTCCTCATAGGCCGGGAGACGGAgaaaagaagagaagaaaggaagaGAATGTGACGAGGGAGAGCTGGGAGGGGTCtgggagtgaaggaaggatagACAGTGGTCAGAGGTCAGATATCCTGAGGATGGTGATGGACAGGAGGTTGAGAGGTCAGCTAACTGAAGACCAGGAGACAGGCTACCACACAGAGGAGGGAAGCAGCCCCGACCGGGACCATGGAGGGAGCAACTACcagacagaccagggagggagCGATGGAGAGGACACATCTGCAGACAACAGCAAGATAGAGGATCAGGACGACTCGTGGGACCTGATCACCTGTTTCTGCCTGAAACCGTTCGCGGGTCGGCCCATGATAGAGTGTAGTGAGTGTGGCACCTGGGTGCACCTGTCCTGCGCTAAGATCCGCCGCACCCACGTTCCTGAAGTCTTCACCTGCCAGCCCTGCCGAGATGCCAAGACCAACATCAGACGGTCCAACCGGGCGCGGATCGCCTCCCGCAAACGCTTCAGCGACTAGAGGGCACTAGCTGGTTCATTGGCTGCGTCCAAATtggtgtcaggta

Function

NR:

description
PHD finger protein 13-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582358.2 True 2075 mRNA 0.49 4 14567016 14585375
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110503815 dus14 coding downstream 17576 14547717 ~ 14549440 (-)
LOC110503811 stard13 coding downstream 47389 14404761 ~ 14519627 (-)
LOC110503343 LOC106612894 coding downstream 165217 14071786 ~ 14401799 (-)
LOC110503806 LOC106612897 coding downstream 540969 14021980 ~ 14026047 (-)
aamdc aamdc coding downstream 547802 14015443 ~ 14019214 (-)
kbtbd3 kbtbd3 coding upstream 1565 14586940 ~ 14591929 (-)
LOC110503819 slc35f2 coding upstream 6656 14592031 ~ 14597730 (-)
ompa LOC106612885 coding upstream 54433 14639806 ~ 14684005 (-)
LOC110503824 NA coding upstream 99917 14624102 ~ 14686972 (-)
LOC110503346 LOC106580992 coding upstream 102432 14687807 ~ 14697439 (-)
G1905321 NA non-coding downstream 17078 14542122 ~ 14549938 (-)
G1905308 NA non-coding downstream 35634 14526414 ~ 14531382 (-)
G1905301 NA non-coding downstream 52262 14514549 ~ 14514754 (-)
G1905300 NA non-coding downstream 52524 14514261 ~ 14514492 (-)
G1905299 NA non-coding downstream 54451 14511881 ~ 14512565 (-)
G1905349 NA non-coding upstream 31786 14617161 ~ 14619409 (-)
G1905350 NA non-coding upstream 36305 14621680 ~ 14621894 (-)
LOC110503827 LOC106612879 non-coding upstream 143590 14728963 ~ 14734638 (-)
G1904919 NA other downstream 352496 14180063 ~ 14214520 (-)
G1904877 NA other downstream 424288 14089722 ~ 14142728 (-)
G1904846 spg20 other downstream 523567 14042970 ~ 14043449 (-)
G1904408 NA other downstream 808372 13757828 ~ 13758644 (-)
rabx5 rabx5 other downstream 847565 13716650 ~ 13719451 (-)
G1905348 NA other upstream 34288 14619663 ~ 14621372 (-)
G1905324 LOC106612883 other upstream 36820 14622195 ~ 14655274 (-)
G1905737 NA other upstream 355315 14940690 ~ 14941172 (-)
G1905741 NA other upstream 360623 14945998 ~ 14946447 (-)
G1905780 NA other upstream 497934 15083309 ~ 15084752 (-)

Expression

LOC110503814(LOC106612890) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC110503814(LOC106612890) Expression in each Bioproject

Bar chart with 21 bars.
LOC110503814(LOC106612890) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network