LOC110503827 (LOC106612879)


Basic Information

Item Value
gene id LOC110503827
gene name LOC106612879
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 14728963 ~ 14734638 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961384.1
TTCCTTCTTTTCTCCGTCACTAGTTTCCACAGCGTCATAACCCtcgcctatttctacaatgtatATATTTGAAACCCTTACTCTGAGCTATAATAAAGAACCCGAACCTAAAAAATAAGACCAATAAGCgcttacattttttattacaaGCCATATTTACTTTGTCGCAACTTATTTTCTTGGCGGGGATGCGTAGTTGTTACCTCTGAGGTATAATAAGAACGGTGACGTTGGCTACCTGCTAGCTAGCAGTGGGAGCTGGGTCGAGTAAATGCTACCGAGCAAGCTAATGGCACTAACGTTTCAGGGGAATGTCTACTAAATAAATATTCGGACTCGTTAACTCTTCAGGCTATCGATAGCTATATCGTCTTTTGTCTTGGCTGCACAGACATCTAGCTATCCGTTTCTGTTCAGACAGAGTTAAATAGGCAGTTTTGGGAAACGAAGTTAGCCAGCCAGGTCACAGAAGTGCAGTGTTGTGGACCGACCCAAAAGAGAGTTTTCTCTGCCGTCCTCCATCGGTTTCCGAGGATGGTTCTGCTAAGGAGTGTCCCCCCACCCACCGAGGGAGTCCGGCATGAACAAGGCGAGACGACGGCGGTGTTGGACGGGAAGGGTCTCGGCACAGGGACTCTCTACGTTGCTGAAACGCGGTTGTCGTGGTTTGACGGGTCAGGGATGGGCTTCTCTCTGGAGTACCCCACTATCAGCCTTCACGCCATCTCACGAGACCTCAGCGCCTACCCACAGGAACATCTATACGTCATGGTCAATGCAAAACTCAACGATGAGATGCAGGAGAATGCCcatgatgaggaggatgaggaagacgaGTGTGAGGGGATCACAGAGATCCGCTTCGTCCCTAGCGACAAGGCAGCATtggagTCTATGTTTTCAGCGATGTGTGAGTGTCAGGCCCTGCACCCAGACCCAGATGACGAAGACTCCAACGGGGATTTTGATGGAGATGAGTACGATGTGGAGGAGGCAGAGGCAGagCATGGTCAGGGTGATATCCCGTCATTCTGTACATATGAGGAGGGTGTGTCGGGGCTGAGGGCTGAAGGCCAGGCCACTCTACAGAGACTGGAGGGCATGTTAGCTCAGTCTGTCGCAAACACCTTTCACATGGCTGGGGTCCGCACTGATGAGACCAATGGAGAGTTTGACGATGGGGTGGAGGTGGATGCAGGGTCAACGGTGGCTGGACAGTTTGAAGATGCAGACATAGACCACTAatGGATCTCAGCCAGTCAAAGCACTTGTGGTACATTGTGGGATAGGAGAATACAACCTCTCCACTTCCTGTCCCCAAGGCATCATTTTCCACAGAAATATATATTCCTCTCGTGTTTTGTACCTGAAGACCAGTTGTACTGAGTTTTCCCCAACAGGGAGCAGTGTTGTCTTTGTATGAAATCTCTTCAATAAATAAATCGTTTTTGTATGAa
>TU2179226
actggtggtattctctctctgtcccccagagCATGGTCAGGGTGATATCCCGTCATTCTGTACATATGAGGAGGGTGTGTCGGGGCTGAGGGCTGAAGGCCAGGCCACTCTACAGAGACTGGAGGGCATGTTAGCTCAGTCTGTCGCAAACACCTTTCACATGGCTGGGGTCCGCACTGATGAGACCAATGGAGAGTTTGACGATGGGGTGGAGGTGGATGCAGGGTCAACGGTGGCTGGACAGTTTGAAGATGCAGACATAGACCACTAatGGATCTCAGCCAGTCAAAGCACTTGTGGTACATTGTGGGATAGGAGAATACAACCTCTCCACTTCCTGTCCCCAAGGCATCATTTTCCACAGAAATATATATTCCTCTCGTGTTTTGTACCTGAAGACCAGTTGTACTGAGTTTTCCCCAACAGGGAGCAGTGTTGTCTTTGTATGAAATCTCTTCAATAAATAAATCGTTTTTGTATG
>TU2179231
actggtggtattctctctctgtcccccagagCATGGTCAGGGTGATATCCCGTCATTCTGTACATATGAGGAGGGTGTGTCGGGGCTGAGGGCTGAAGGCCAGGCCACTCTACAGAGACTGGAGGGCATGTTAGCTCAGTCTGTCGCAAACACCTTTCACATGGCTGGGGTCCGCACTGATGAGACCAATGGAGAGTTTGACGGTGGGTCACATACGCGTACAAGAATAGCTCACACACATAGTCAAACACAGGATACAAGggtaggtcacacacacactgaaatagTATAACCCCACAGGCAAAGTTTCATGAACGGGATGTAAATAATACACAGCGGAGGTTCTTGAAACTGACTTTCTCAGCTCTGCTTGTTAGATGTGGTGTGTATTGTAATAACCACGAgatttatttaactgggcaagtccgttaagaacaaattcttatttacaatgacggcctacaccggccaaacccggatgacgctgggccaattgagcgccaccctatggaactcccaatcacagccagttgtgatacagcctggatggcACTTGAGGACAGAGTGACAATGATCCTGCTCTACATAGTCACTACATAACAGCAAGTACATAACAAAGAgaacataacataatacaataaAAGATGCATGCAAAAACATTACAAAAATATTACCAGGCTAGCTACTTGGTCTTAGAATATCCTGACTGGCTTGAATGGAACAAGCATCTCTGTCAGATGAGGGAGCTTAGCCATGGAGCCTTCCAGAAGTTAAAATAAGAGCATTGAAGTCAGCCTGATACTGGCAACTAATAAGCCAGTACAGTTAGTCCTTCTCTGGAGCACCGGATGGTTCTCCAACTCGAGCCTGTCGCTGACTTATCACTACAAAAGAGTGAAAACACTCAATTTCTGTAGCTGTGTTTCTCTGAGAAGGATACATCTGCTAGAATCTCTTCCCTCTGTCACACACTCTTCTTACACTTCTATCTTTTCTCTCTtgtaccatctctctccctccatctcttccctaTTTGGTACCTACTTTTAGATTTTCTGTGGTAGCTCTTTCTCCTTGTTGTTGACATGGTACCTGTTCCCACGTTTCTCTAAGAGCCATCTGAGctcactgctcaaaaaaataaagggaacactaaaataacacatcctagatctgaattaatgaaatattcttattaaaaacttttttctttacatagttgaatgtgctgacaacaaaaccacacaaaaattaccaatggaaatcaaatgtatcaacccatggaggtctggatttggagtcacactcaaaattaaagtggaaaaccacactacaggctgatccaactttgatgtaatgtccttaaaacaagtcaaaatgaggctcagtagtgtatgtggcctccacgtgcctttatgacctccctacaacacctgggcatgctcctgatgaggtggcggatggtctcctgaaggatctcctcccagacctggtttaaagcatccgccaactcctggacagtctgtggtgcaacgtggcgttggtggatggagggagacatgatgtcccagatgtgctcaattggattcaggtctggggaacggcgggccagtccatagcatcaatgccttcctcttgcaggaactgctgacacactccagccacatgaggtctagtattgtcttgcattaggaggaacccagggccaaccgcagcagcatatggtctcacaaggggtctgaggatctcatctcggtacctaatggcagtcaggctacctctggcgagcacatggagggctgtgcggccccccaaagaaatgccaccccacaccatgactgacccaccgccaaaccggtcatgctggaggatgttgcaggcagcagaacgttctccacggcgtctccagactgtcacgtgctcggtgtgaacctgctttcatctgtgaagagcacagggcgccagtggcgaatttgccaatcttggtgttctctggcaaatgccaaatgtcctgcacggtgttgggctgtaagcacaacccccacctgtggacgtcgggacggatggtagaggcgggttacccactcgccgaCGAATTATCACAAGAGACATGGACCTGTGTACCCTGTACTGGCGTCTTCTCTTCTTTGAGCCTGGTCGGGTATCTGGAGTAAATTCTTcgcgtccgactcattaaagaaaaaatctttgtccagttcaaggtgcgtaatcgctgttctgatatccagaagctattttcagtcataagaggtGGCATAAacatatgtacaaaataagttacaaacaatgcaaaaaacattcaaaatagcacaattggttaggagcccgtaaaacggcaacCATATCCTCTGGCgctaaagctgtaacgtaacaaaatgtagaaaaagtcaaggggtctgaatactttatgaatgcgcTGTAACTTAACGTAGTAAGTAAATATAACTCAGTATAGTAAATCAATCTGGCCAGGTTTGTTTGACACACACTGCTGGAATTTCCAGTATTAATGTTTTTTTCCTGTGTGACTTTGTCACATGTACTTTGTCTTCCAAGGCATTCAGAGCCCCTATCTCTATCTTGAaaggaaaaaaaaacactttcactTTCTTTTTCTCACTCTGACTAGCGGGTATATAGTTCAGAGCATAGCCCACACCCGTTATGAACACATGAGCATGAAGAAAGCTGCATGTGTTTCATGATAATCAGTATATTGGCTGTTCTAgtcattgtatttctatgtctgTCTTTGCAGATGGGGTGGAGGTGGATGCAGGGTCAACGGTGGCTGGACAGTTTGAAGATGCAGACATAGACCACTAatGGATCTCAGCCAGTCAAAGCACTTGTGGTACATTGTGGGATAGGAGAATACAACCTCTCCACTTCCTGTCCCCAAGGCATCATTTTCCACAGAAATATATATTCCTCTCGTGTTTTGTACCTGAAGACCAGTTGTACTGAGTTTTCCCCAACAGGGAGCAGTGTTGTCTTTGTATGAAATCTCTTCAATAAATAAATCGTTTTTGTATG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961384.1 False 1457 mRNA 0.49 8 14728963 14734638
TU2179226 False 481 lncRNA 0.49 3 14728965 14732184
TU2179231 True 3057 lncRNA 0.45 2 14728965 14732184

Neighbor

gene id symbol gene type direction distance location
LOC110503826 LOC106612881 coding downstream 8144 14703576 ~ 14720819 (-)
LOC110503346 LOC106580992 coding downstream 31524 14687807 ~ 14697439 (-)
LOC110503824 NA coding downstream 42191 14624102 ~ 14686972 (-)
ompa LOC106612885 coding downstream 85550 14639806 ~ 14684005 (-)
LOC110503819 slc35f2 coding downstream 131233 14592031 ~ 14597730 (-)
rsf1a LOC106612877 coding upstream 5933 14740571 ~ 14760173 (-)
LOC110503830 LOC106612876 coding upstream 104534 14839172 ~ 14873526 (-)
LOC110503831 LOC106612758 coding upstream 143724 14878362 ~ 14913662 (-)
LOC110503833 LOC106612871 coding upstream 372741 15107379 ~ 15148479 (-)
LOC110503834 LOC106612757 coding upstream 418225 15152863 ~ 15167618 (-)
G1905350 NA non-coding downstream 107069 14621680 ~ 14621894 (-)
G1905349 NA non-coding downstream 109554 14617161 ~ 14619409 (-)
G1905321 NA non-coding downstream 179025 14542122 ~ 14549938 (-)
G1905428 NA non-coding upstream 55332 14789970 ~ 14790397 (-)
G1905713 NA non-coding upstream 134763 14869401 ~ 14908388 (-)
G1905714 NA non-coding upstream 136083 14870721 ~ 14910363 (-)
G1905718 NA non-coding upstream 158014 14892652 ~ 14894189 (-)
G1905722 NA non-coding upstream 165981 14900619 ~ 14903836 (-)
G1905324 LOC106612883 other downstream 73689 14622195 ~ 14655274 (-)
G1905348 NA other downstream 107591 14619663 ~ 14621372 (-)
G1904919 NA other downstream 514443 14180063 ~ 14214520 (-)
G1904877 NA other downstream 586235 14089722 ~ 14142728 (-)
G1904846 spg20 other downstream 685514 14042970 ~ 14043449 (-)
G1905737 NA other upstream 206052 14940690 ~ 14941172 (-)
G1905741 NA other upstream 211360 14945998 ~ 14946447 (-)
G1905780 NA other upstream 348671 15083309 ~ 15084752 (-)
LOC110503349 LOC106612868 other upstream 522082 15252457 ~ 15298489 (-)
G1906115 NA other upstream 619302 15353940 ~ 15354573 (-)

Expression


Co-expression Network