rsf1a (LOC106612877)


Basic Information

Item Value
gene id rsf1a
gene name LOC106612877
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 14740571 ~ 14760173 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582378.2
AATTCTGGGCTCTTTTCTGTCCTCCCTACTCCGTTCATTCTCATCCTACTCCCCGGCTGAAAAATGGCTGCTTTAGCGGCAGCGCAGGGCTCAAACCCCGGTCTCTGCCCCAGTTTCGCAGTGGTCTGCTCGTTCCTGGAGCGCTACGGACAAGCCCTGGACCTCCCCGAACTCACGTTTCCGCAGATGGAGAGGTATCTCCGGGACACATCGACAgtTCCCAAGCCACTGGTGGAGCTGCATGTCAAGCTCCTGAGGAAGCTTGGCAAGTCTGTGTCTGCAGACAAGTGGGAGAGGTACCTGGCTAAGGTATGCCAGGACATCAACAGTAGCTGGGCTTGGGAGCTGGAACACAAGGGCTACCAGGATTTGAGCATGGAGTGCAAAACCAGCATCCTCAAaTACCTGTGTGAGATCCAGTTTGATGACAACCTGAAGTTCAAGACGTTGGTGAACGAGGAGGAGGCGGAGGCAATGAGGTTGCAGCCCTtgggcagagacagacagggcctgatgtactggctgcagactgacGCCCAACACAACATTCGCCTGTATACAGAGGAACAGGACGACTGGGACGGATCCACCTGGAGATGTATCGTCAGAACCCGGAACGACTTGGCCGATGCTCTGGACCTCCTGAAGACCCAGCTGGACCCAGAAcacaaggagaaagaggagggagagacggagagaaagaaagagatggacagagagaaggagggaggatcCAACTTTGTCAAAccggtggagagggggagaagacacACAGAGGAGGGTGAGGCTGGAGGAGAGgtaaaggaggaggaagaggagaaggcaAGACAGAAGAGGAAGGCTGAGGAAGACAAGAACGAGAGtaaagatagagagaaggaggaagaggaggataagCGAGAAAAGAGTAGATCATCTACCTACCCAGAATCCACGAGTACGGATGACAACATGGCATCGTTAGCAGAGAAGGAAAACGCAACCAAGTCTGAACTGTTATTCTCAGTGAAAGAGGAAAACATTGCAGTTGAGATGAAGGAAGAAAAGGAAACGAAAAAATGTgatgagaaagaagagagagagacacagagtgtgaggaaggaggagaggtcaGAAGTGATTGACAACAGAGTGAGCACCATCACTGCGCTCGTCAAAGAGGAGACCCAAATGCTTAACAACTCCCCTAGCAACGCTGTCTCCGTCGTCATGGCGCCCGTCTCGGCAACGACAAAACAGGAAGTTCCTCCTGTGAAGGAGGAAGCGGAGCGGGCCCTGAGGACCGACCAGCAGGCCAAGATACCACTGAAGAAGAGAGAGCTCTTTGGCGCTAAccgtcaccatagcaacacacatcacaacaatgaCATGCACAGcaaccaacacaacaacaacagccatagCAGCAGTACTAGCAGTAGCATCATTGTCCGTAACCCTTCAGTAACACATACCAAGGAGGAGCAGCTGGGGAGGCAGTCAGCGCCACCTGGGGGCCTAGCTGTCCCACTGCCAGAGGAGCTGACCAATGGGGGGGCTCCCCTAAACGGGCTTGGAGGGCTCACAGGGGGTATAGGTCATGTGGGGGTCATCTGCAGGTCAGCCTCGCAGCAACAAGATGGTGGATTGTTCTGTACGGACAGAACCAGACCGAGGTCAGAGGAAGGGGCTGAGAGGGCCAGCGCTCCAGACAAGGAGAGGAGCAGGCAGTCAGTCCTGGTGAGGAAGAGTCCTGGCTGGGGAGAGACTGGAGCCCCAACACCCCTAGAGcctagaggacaggagagacaggcaggaggagaggagaggcaaaggaaggagaaaggagagagatccAGGGAGAGATTAGGAGAGGATGGAATTGAGAAAGCGAGGGAGAGGTTCGATGGAGACCTGtctggagagagggatgacaacacaaaagagaaagaagagaaagagacaaagaccaCCCTCCATATGGAGAAAAGCGAGGGATGCCATggaacagaggaagaggagaagaagagtacTTCAGGAGAGAAGGAGCAGGAGTCAGAGAGCAGTCAGActgtagaaggacagagggaCCAGGGAGAGGCCCTCAGTACAGACACACCAGCCCATGCCAGGGTGAGGGGAGCTGGGCATGGAGCAGCAGACCGGCCGGGTCCCCTTGAGGCCTCCTCTGAGCTGCAGAAAGAAGGGATCAGGCTGAAGATAAAGATCCCTCCCAACCAGAGGATAGAGAAtgtgagagaagaggaggagaaggcggAGGAGCAGGGAGATGGGAGGTCTCTGCGGAGATCGGCTCGGATCTGCAGACCCAGCCCAAACAAGGCGAAGAGCCAAGATGCACCCCCAGGAGtgaggagggaagaagaggaagagaagactgCTCAATGGCAAAAGAAGAGAGCAAACCCTGAGGGACAGGGAGACAGCAGGACTGTAAAGagcAGACGAAGACAACGAGGCCCCCGCTGGTCAAACACTCGAGCGAAGAGATGCAAACcgaatgagggaggagaggagggggaggagagagggagaaaggaggagagagggagggagggaagtattTGTGACTCAGATGACTCTAGCCAATCAGAGGAGATGCCTAATGAAGATCCCTGCAGCCACTGTGGACTCCCCAACCACCCCGAActgATCCTGCTGTGTGATTCATGTGATAGTGGTTACCACACCGCCTGCCTCAGACCCCCTCTCATGGTCATACCTGAGGGAGAATGGTTCTGCCCACCCTGCCAACACAAACTGCTGTGTGACAGACTAGAGGAgcagctgcaaaatctggattgCGCTCTGAAGAAAAGAGACCGAGCTGAGAGGAGGAGGGAGCGTCTGGTGTATGTGGGAATCAGTGTGGAGAACATCATTCCTcaggaaggggaggaagaagaggagaaactGGTGAAGAAGAAAGATGCAAAAAATACCAAAAACCTGGGAAGGAGGTCTACCAGAACCAGGAAGTGTATCagctacagGTTTGATGACTTTGATGACGCCATTGATGAAGCGATAGAGGAAGACGTCAGAGATGAGGATGGAGGAgAGGTGGGGCAGGGTAAGGACATTGCCACCATCCTatcagaggaggggaaggagaaacGAGGACCAACCACAGCTCAGGCCCCTCCCACCAGGAGCAGGAAGAGAAGGAGACTCAACGACCTGGAGAGCGACAGCACGGCTGCAGAGAGCGAGGAGGAGTTTCAGCTCAGCGCCAGtacggaggaggaggagtttgTAGCGTCAGGTGATGAGGAAGCAGCCAGTGATGTGGACAGCTTTGCCAGCGACCCGGGCTTCGTAAGCCAGTCCACACGGGCACAGAGACGGGCacctaaacagagaacctccagGACCGCAGCAAAGTGCAAGAAACGCCCAcgcagacagaggagaggatggggggaggaggaggaggagagtgaagaggaggaggaagaggagatggagACCAGTGATTTGAGTGACAGCGATGGGGACAGGAAGAGGTGTGGTTTAAGGAGGGGCCGGAAGCGGGAGGTGAACTACCGCGAGACCTCAGAATCCGAGTGTTCCCAGGCAACCACCAATAAGGATAAGGCTAAACCCCGCCGCCGTCGTCTCTCCAGCTCAAACAGCGATGAATCCTCCCATTCGAGACAGtctgaggaggaagagaagagaatgaggggaaagaggcggagagaagaggtggaggagagtagAACAaggggaaagaagaggagaggagagacgatggGCAGAGGGAAGCGGAGGAAGGTGTTGATAGAACAGCGGAGGAAACGTCTAgctctgctgaagaaaagcagaccctCCACTAAAGATGATGAGGATGATAACGATGAAGGAGAATCGGAGTCGTCATCCGAGGAAGATCGTCCTATCCGCAAACGACTTAACCGCATCGActctgatgaagaggaggagaaagagggaaaaaatgaggaggacgaggaagaagaggatgaagaggagaagaagCTGAGAAAGCCGTCATCAAAAGACAAGGAATCAAACAGCCCTAATGGACAGCAGGCCTCTAGAGGCTCAACACAGCCTGGGTCTGAGAGTGCAGCCTTACCCAGGGACAGAGCAGCCAGAGCTGGGCAGAACAGGTCTAACAGCCCCCCACCTCCTGACCAGTCAGACGCATGATGACATAGACttttagttatattttgttttactTTCTTGCCTTTCACCAACAACCTTTCAACTGGATCTCTCATTACCtcatcatccctccttccctttctcctttccctcctcctcccttcctctaaaCAGGATGAATAACTACTGGACCAAACGCACTAGCGCcatccaacacacagacacacaacacaatacacagccAAAGGGTGAAGGACTGTCCTGAGCACCAGACAGACACCCTCCTTAGCTGTTCTCCAGCTGTTCTGCTCGGCTGCTGATCCTGTAAAATACTAGatgttctcttctctgtctccctctaaaATTGTGTTCTATATACCATGAAGGAGAGAGCGAATGGACTGGAGTGTTTAATAATCCCAGAAAATAGTGAGTTGGATGTTTTAAACCAATGGAAGAGCTGCTCTTGTTGCTCTGCTGTGAACCAGGAAGATAACTACCAGAAAGAGATTCATACAGGCTGATTCATCTCAAATGACACTTTGCAGATTTGACCACAGTTACAACTACAGTGGGGGCTGGCAGATGGACACTGGCAAATTATCTAACTAGCTATGTTCAGTAAATCAATTCACTGTTGACTTTTATGTGTTAGTTGAAGTGTTCCTTCTCTCACTCAGTGAGGACTGAATAATTTATCCACAGAAGTCTACTACTCTCCATTCCAGTCTATACATTCTACAACCTACTACTATTTGAGAAGATGGGGTCATATTCATAAGTCTGAAAaaggactgaaacagggagggactacctgaacttgcaaaatgttttgctgctgtgtgccctaatgaatatggCCCCAGGTGTGAATGCTGTATCTGGTCCTCAGTCCACTGTCTGTTCTGTTTTCATCCTCAGAGTTCCATCTGAACCTCTTTATAGATTCTATCATTCCAGCTCATTGTTCTTATGTTTTCTCCCCCCCCCAAAATATCAAATATTTTGAAATGTTCAGTCTGAAAAAAAGAAATCACCCTGTTATTCATCCacagtgtatgtacagtatgtttataGTTGATGCTGTAACATAGGTGTTTTATAAGTTATTAAAAACCAATATTCAAGCATCTCACAAA
>XM_021582379.2
AATTCTGGGCTCTTTTCTGTCCTCCCTACTCCGTTCATTCTCATCCTACTCCCCGGCTGAAAAATGGCTGCTTTAGCGGCAGCGCAGGGCTCAAACCCCGGTCTCTGCCCCAGTTTCGCAGTGGTCTGCTCGTTCCTGGAGCGCTACGGACAAGCCCTGGACCTCCCCGAACTCACGTTTCCGCAGATGGAGAGGTATCTCCGGGACACATCGACAgtTCCCAAGCCACTGGTGGAGCTGCATGTCAAGCTCCTGAGGAAGCTTGGCAAGTCTGTGTCTGCAGACAAGTGGGAGAGGTACCTGGCTAAGGTATGCCAGGACATCAACAGTAGCTGGGCTTGGGAGCTGGAACACAAGGGCTACCAGGATTTGAGCATGGAGTGCAAAACCAGCATCCTCAAaTACCTGTGTGAGATCCAGTTTGATGACAACCTGAAGTTCAAGACGTTGGTGAACGAGGAGGAGGCGGAGGCAATGAGGTTGCAGCCCTtgggcagagacagacagggcctgatgtactggctgcagactgacGCCCAACACAACATTCGCCTGTATACAGAGGAACAGGACGACTGGGACGGATCCACCTGGAGATGTATCGTCAGAACCCGGAACGACTTGGCCGATGCTCTGGACCTCCTGAAGACCCAGCTGGACCCAGAAcacaaggagaaagaggagggagagacggagagaaagaaagagatggacagagagaaggagggaggatcCAACTTTGTCAAAccggtggagagggggagaagacacACAGAGGAGGGTGAGGCTGGAGGAGAGgtaaaggaggaggaagaggagaaggcaAGACAGAAGAGGAAGGCTGAGGAAGACAAGAACGAGAGtaaagatagagagaaggaggaagaggaggataagCGAGAAAAGAGTAGATCATCTACCTACCCAGAATCCACGAGTACGGATGACAACATGGCATCGTTAGCAGAGAAGGAAAACGCAACCAAGTCTGAACTGTTATTCTCAGTGAAAGAGGAAAACATTGCAGTTGAGATGAAGGAAGAAAAGGAAACGAAAAAATGTgatgagaaagaagagagagagacacagagtgtgaggaaggaggagaggtcaGAAGTGATTGACAACAGAGTGAGCACCATCACTGCGCTCGTCAAAGAGGAGACCCAAATGCTTAACAACTCCCCTAGCAACGCTGTCTCCGTCGTCATGGCGCCCGTCTCGGCAACGACAAAACAGGAAGTTCCTCCTGTGAAGGAGGAAGCGGAGCGGGCCCTGAGGACCGACCAGCAGGCCAAGATACCACTGAAGAAGAGAGAGCTCTTTGGCGCTAAccgtcaccatagcaacacacatcacaacaatgaCATGCACAGcaaccaacacaacaacaacagccatagCAGCAGTACTAGCAGTAGCATCATTGTCCGTAACCCTTCAGTAACACATACCAAGGAGGAGCAGCTGGGGAGGCAGTCAGCGCCACCTGGGGGCCTAGCTGTCCCACTGCCAGAGGAGCTGACCAATGGGGGGGCTCCCCTAAACGGGCTTGGAGGGCTCACAGGGGGTATAGGTCATGTGGGGGTCATCTGCAGGTCAGCCTCGCAGCAACAAGATGGTGGATTGTTCTGTACGGACAGAACCAGACCGAGGTCAGAGGAAGGGGCTGAGAGGGCCAGCGCTCCAGACAAGGAGAGGAGCAGGCAGTCAGTCCTGGTGAGGAAGAGTCCTGGCTGGGGAGAGACTGGAGCCCCAACACCCCTAGAGcctagaggacaggagagacaggcaggaggagaggagaggcaaaggaaggagaaaggagagagatccAGGGAGAGATTAGGAGAGGATGGAATTGAGAAAGCGAGGGAGAGGTTCGATGGAGACCTGtctggagagagggatgacaacacaaaagagaaagaagagaaagagacaaagaccaCCCTCCATATGGAGAAAAGCGAGGGATGCCATggaacagaggaagaggagaagaagagtacTTCAGGAGAGAAGGAGCAGGAGTCAGAGAGCAGTCAGActgtagaaggacagagggaCCAGGGAGAGGCCCTCAGTACAGACACACCAGCCCATGCCAGGGTGAGGGGAGCTGGGCATGGAGCAGCAGACCGGCCGGGTCCCCTTGAGGCCTCCTCTGAGCTGCAGAAAGAAGGGATCAGGCTGAAGATAAAGATCCCTCCCAACCAGAGGATAGAGAAtgtgagagaagaggaggagaaggcggAGGAGCAGGGAGATGGGAGGTCTCTGCGGAGATCGGCTCGGATCTGCAGACCCAGCCCAAACAAGGCGAAGAGCCAAGATGCACCCCCAGGAGtgaggagggaagaagaggaagagaagactgCTCAATGGCAAAAGAAGAGAGCAAACCCTGAGGGACAGGGAGACAGCAGGACTGTAAAGagcAGACGAAGACAACGAGGCCCCCGCTGGTCAAACACTCGAGCGAAGAGATGCAAACcgaatgagggaggagaggagggggaggagagagggagaaaggaggagagagggagggagggaagtattTGTGACTCAGATGACTCTAGCCAATCAGAGGAGATGCCTAATGAAGATCCCTGCAGCCACTGTGGACTCCCCAACCACCCCGAActgATCCTGCTGTGTGATTCATGTGATAGTGGTTACCACACCGCCTGCCTCAGACCCCCTCTCATGGTCATACCTGAGGGAGAATGGTTCTGCCCACCCTGCCAACACAAACTGCTGTGTGACAGACTAGAGGAgcagctgcaaaatctggattgCGCTCTGAAGAAAAGAGACCGAGCTGAGAGGAGGAGGGAGCGTCTGGTGTATGTGGGAATCAGTGTGGAGAACATCATTCCTgaaggggaggaagaagaggagaaactGGTGAAGAAGAAAGATGCAAAAAATACCAAAAACCTGGGAAGGAGGTCTACCAGAACCAGGAAGTGTATCagctacagGTTTGATGACTTTGATGACGCCATTGATGAAGCGATAGAGGAAGACGTCAGAGATGAGGATGGAGGAgAGGTGGGGCAGGGTAAGGACATTGCCACCATCCTatcagaggaggggaaggagaaacGAGGACCAACCACAGCTCAGGCCCCTCCCACCAGGAGCAGGAAGAGAAGGAGACTCAACGACCTGGAGAGCGACAGCACGGCTGCAGAGAGCGAGGAGGAGTTTCAGCTCAGCGCCAGtacggaggaggaggagtttgTAGCGTCAGGTGATGAGGAAGCAGCCAGTGATGTGGACAGCTTTGCCAGCGACCCGGGCTTCGTAAGCCAGTCCACACGGGCACAGAGACGGGCacctaaacagagaacctccagGACCGCAGCAAAGTGCAAGAAACGCCCAcgcagacagaggagaggatggggggaggaggaggaggagagtgaagaggaggaggaagaggagatggagACCAGTGATTTGAGTGACAGCGATGGGGACAGGAAGAGGTGTGGTTTAAGGAGGGGCCGGAAGCGGGAGGTGAACTACCGCGAGACCTCAGAATCCGAGTGTTCCCAGGCAACCACCAATAAGGATAAGGCTAAACCCCGCCGCCGTCGTCTCTCCAGCTCAAACAGCGATGAATCCTCCCATTCGAGACAGtctgaggaggaagagaagagaatgaggggaaagaggcggagagaagaggtggaggagagtagAACAaggggaaagaagaggagaggagagacgatggGCAGAGGGAAGCGGAGGAAGGTGTTGATAGAACAGCGGAGGAAACGTCTAgctctgctgaagaaaagcagaccctCCACTAAAGATGATGAGGATGATAACGATGAAGGAGAATCGGAGTCGTCATCCGAGGAAGATCGTCCTATCCGCAAACGACTTAACCGCATCGActctgatgaagaggaggagaaagagggaaaaaatgaggaggacgaggaagaagaggatgaagaggagaagaagCTGAGAAAGCCGTCATCAAAAGACAAGGAATCAAACAGCCCTAATGGACAGCAGGCCTCTAGAGGCTCAACACAGCCTGGGTCTGAGAGTGCAGCCTTACCCAGGGACAGAGCAGCCAGAGCTGGGCAGAACAGGTCTAACAGCCCCCCACCTCCTGACCAGTCAGACGCATGATGACATAGACttttagttatattttgttttactTTCTTGCCTTTCACCAACAACCTTTCAACTGGATCTCTCATTACCtcatcatccctccttccctttctcctttccctcctcctcccttcctctaaaCAGGATGAATAACTACTGGACCAAACGCACTAGCGCcatccaacacacagacacacaacacaatacacagccAAAGGGTGAAGGACTGTCCTGAGCACCAGACAGACACCCTCCTTAGCTGTTCTCCAGCTGTTCTGCTCGGCTGCTGATCCTGTAAAATACTAGatgttctcttctctgtctccctctaaaATTGTGTTCTATATACCATGAAGGAGAGAGCGAATGGACTGGAGTGTTTAATAATCCCAGAAAATAGTGAGTTGGATGTTTTAAACCAATGGAAGAGCTGCTCTTGTTGCTCTGCTGTGAACCAGGAAGATAACTACCAGAAAGAGATTCATACAGGCTGATTCATCTCAAATGACACTTTGCAGATTTGACCACAGTTACAACTACAGTGGGGGCTGGCAGATGGACACTGGCAAATTATCTAACTAGCTATGTTCAGTAAATCAATTCACTGTTGACTTTTATGTGTTAGTTGAAGTGTTCCTTCTCTCACTCAGTGAGGACTGAATAATTTATCCACAGAAGTCTACTACTCTCCATTCCAGTCTATACATTCTACAACCTACTACTATTTGAGAAGATGGGGTCATATTCATAAGTCTGAAAaaggactgaaacagggagggactacctgaacttgcaaaatgttttgctgctgtgtgccctaatgaatatggCCCCAGGTGTGAATGCTGTATCTGGTCCTCAGTCCACTGTCTGTTCTGTTTTCATCCTCAGAGTTCCATCTGAACCTCTTTATAGATTCTATCATTCCAGCTCATTGTTCTTATGTTTTCTCCCCCCCCCAAAATATCAAATATTTTGAAATGTTCAGTCTGAAAAAAAGAAATCACCCTGTTATTCATCCacagtgtatgtacagtatgtttataGTTGATGCTGTAACATAGGTGTTTTATAAGTTATTAAAAACCAATATTCAAGCATCTCACAAA

Function

NR:

description
remodeling and spacing factor 1-like isoform X2

GO: NA

KEGG:

id description
K22768 MBD9; methyl-CpG-binding domain-containing protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582378.2 False 5270 mRNA 0.52 17 14740571 14760173
XM_021582379.2 True 5267 mRNA 0.52 17 14740571 14760173

Neighbor

gene id symbol gene type direction distance location
LOC110503827 LOC106612879 coding downstream 5933 14728963 ~ 14734638 (-)
LOC110503826 LOC106612881 coding downstream 19752 14703576 ~ 14720819 (-)
LOC110503346 LOC106580992 coding downstream 43132 14687807 ~ 14697439 (-)
LOC110503824 NA coding downstream 53799 14624102 ~ 14686972 (-)
ompa LOC106612885 coding downstream 97158 14639806 ~ 14684005 (-)
LOC110503830 LOC106612876 coding upstream 78999 14839172 ~ 14873526 (-)
LOC110503831 LOC106612758 coding upstream 118189 14878362 ~ 14913662 (-)
LOC110503833 LOC106612871 coding upstream 347206 15107379 ~ 15148479 (-)
LOC110503834 LOC106612757 coding upstream 392690 15152863 ~ 15167618 (-)
LOC110503835 LOC106612869 coding upstream 410767 15170940 ~ 15179778 (-)
G1905350 NA non-coding downstream 118677 14621680 ~ 14621894 (-)
G1905349 NA non-coding downstream 121162 14617161 ~ 14619409 (-)
G1905428 NA non-coding upstream 29797 14789970 ~ 14790397 (-)
G1905713 NA non-coding upstream 109228 14869401 ~ 14908388 (-)
G1905714 NA non-coding upstream 110548 14870721 ~ 14910363 (-)
G1905718 NA non-coding upstream 132479 14892652 ~ 14894189 (-)
G1905722 NA non-coding upstream 140446 14900619 ~ 14903836 (-)
G1905324 LOC106612883 other downstream 85297 14622195 ~ 14655274 (-)
G1905348 NA other downstream 119199 14619663 ~ 14621372 (-)
G1904919 NA other downstream 526051 14180063 ~ 14214520 (-)
G1904877 NA other downstream 597843 14089722 ~ 14142728 (-)
G1904846 spg20 other downstream 697122 14042970 ~ 14043449 (-)
G1905737 NA other upstream 180517 14940690 ~ 14941172 (-)
G1905741 NA other upstream 185825 14945998 ~ 14946447 (-)
G1905780 NA other upstream 323136 15083309 ~ 15084752 (-)
LOC110503349 LOC106612868 other upstream 496547 15252457 ~ 15298489 (-)
G1906115 NA other upstream 593767 15353940 ~ 15354573 (-)

Expression


Co-expression Network