LOC110503831 (LOC106612758)



Basic Information


Item Value
gene id LOC110503831
gene name LOC106612758
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 14878362 ~ 14913662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021582383.2
GATTGCCTAGCACTAGCAGCGATGTCTCAACTGTACTACCGGAGGACAGACAACTCCTCCTACAGGGACCGGATCCCTCTGAGGATTGTCAGGGCCGAGTCTGAACTGTCTGGCCTGGAAAGGAACTACCTGGGAGCAGTGGAGAAAGGAGACTACGCCTCAGTCAAACAGGCTCTAGAGGAGGCAGAGATATACTTCCGGATCAACATTAACTGTATAGACCCTTTGGGCCGCACAGCTCTGCTGATCGCTATAGAGAATGAGAACCTGGAGATTATAGAGCTGCTGCTCACCTATAACGTGTACGTCGGTGATGCTCTCCTACACGCCATCCGTAAAGAGGTGGTGGGGGCCGTGGAACTGCTGCTCAACCACAAGAAGCCCAGCGGGGAGAAACAGGTTCCTCCCATCCTATTGGACAAGCAGTTCTCTGACTTCACTCCTGACATCACACCCATCATCCTAGCAGCTCACACCAACAACTATGAGATCATCAAACTGCTGGTGCAGAAGGGGGTGTCTGTGCCCCAGCCACATGAGGTGCGCTGTAACTGCATGGAGTGCGTGTCCAGCTCTGATGTGGATAGTCTTCGTCACTCCCGCTCACGTCTCAACATCTACAAGGCCCTGGCCAGCCCATCACTCATAGCCCTCTCCAGTGAAGACCCTTTCCTCACAGCCTTCCAGCTCTCCTGGGAACTGCAGGAACTCAGCAAGGTGGAGAATGAGTTTATGTCGGAGTATGAAGAGTTATCTCAGCAGTGTAAACAGTTTGCCAAGGACCTGTTGGACCAAACCAGAAGTTCCAGAGAACTAGAGCTGATCCTGAACTACAGAGATGACATCAACCCTCTACTGGATGAGAACACCAACGATCTGGCCAGACTCAAACTGGCTATCAAATACAGACAGAAAGAGTTTGTAGCCCAGCCTAACTGTCAGCAGCTGCTTGCGTCTCGTTGGTACGATGAGTTCCCTGGGTGGAGGCGTCGTCACTGGGCAGGGAAGTTCCTAACCTGTGTCTTCATCggcctcctcttccccctcttctccttctgctACCTGGTCTCTCCTAAGAGCCGCTATGGACACTTCATCAGGCAACCCTTCATCAAGTTTATCTGCCACACAACGTCGTATCTCACCTTCCTGTTCCTGCTGCTGCTGGCTTCCCAGCACATCGTCTCAACAGACCCCAACAGACAGGGGCCGACTCCTACTGTGGTGGAATGGATGATACTGCCCTGGGTACtggGCTTCATCTGGACAGAGATTAAACAGATGTGGGATGGAGGGTTCCAGGACTACATCCATGACTGGTGGAACCTCATGGACTTTGTTATGAACTCTCTGTACCTGGCTACCATTTCTCTGAAGATTGTTGCCTATGTCAAGtaCAGTGGCTTCAGGGCCAGGAACGAGTGGCAGATGTGGCATCCTACCTTGGTAGCAGAGGCTGTGTTTGCCATCGCTAACATCTTCAGCTCCCTCCGCCTCATCTCTCTGTTTACAGCTAACTCCCACCTGGGACCTCTACAGATCTCTCTGGGCAGGATGCTGCTGGACATCCTTAAGTTCCTGTTTATCTACTGCCTGGTGCTCCTGGCCTTCGCTAACGGGCTCAACCAGCTCTACTTCTACTACGAGACAGACGAGGGACTGAAGGGATGCAAGGGCATCCGCTGCGAAACACAGAACAACGCTTTCTCAACgttGTTTGAGACACTCCAGTCTTTGTTCTGGTCTGTCTTTGGGTTGATCAGTTTGTATGTGACCAACGTGGAGGCAGACCACCAGTTCACAGAGTTTGTAGGGGCCACCATGTTCGGAACCTATAATGTCATCTCTCTGGTGGTTCTACTCAACATGCTGATCGCCATGATGAACAACTCATACCAACACATCGCTGATCATGCAGACATTGAGTGGAAGTTTGCAAGAACCAAGTTGTGGATGAGTTACTTTGAAGAGGGAGGGACTCTACCTTCTCCATTCAACATCATCCCGAGCCCCAAGTCAATCTGGTATTTCATCTGCTGGATCAGGAAACACATCTTCAAGATCACCAGGCCCAAGAAAACAGAAACATTTGGAACCATAGGGAGACGGGCTGCTATAAATGTACGAATAAACCACCAGTATCAGGAGGTTTTGAGGAACCTGGTGAAGAGATATGTAGCAGCCATGATCAGAGATGCCAAGACAGAGGAAGGACTGACTGAGGAGAACTTTAAGGAGCTGAAGCAGGACATCTCCAGCTTTAGGTATGAGGTCCTGGGGATGATGAAGGGGAAGGTGGGGCCTGGGGGTGGGGGCGTGGCTATAGCAGGAAGTAAACCCAGTGAAGTGGCAGGGGCCTCCAGTCTGGTCTACCCTGACCACTCCTTCAAGTACTCCCCCAAGTTCCCCCCGGCCACGCTTAAGACCAACATGTTTCACGTCACCACATCCATGCTCCAGCAGAGGGCagccccctcctccacctcctcgtCCACATCCCCTTCCACCTCTCAGGGCTTGAACCGACTGGTCAACGCCTCTGTGGTACCCTCTTGGACCTCCACTGACACCTCCTCCATCCCCACCTCCTCCacttccatctcctctccctcctccactccctccatcaAAGACGGACTGGCCAGGAAAGACATCTGTGACTTTGGGCTCTACTCTGTGTctgaggagatgggggaggctGACCTGGAGGAGCTGGACtgtgatggagagaaggaggagcagggtggagcgagggagaggacGTGTACAGAGAAGGAAGAAAacgaagagaggggagagtga

Function


NR:

description
short transient receptor potential channel 4-like

GO: NA

KEGG:

id description
K04967 TRPC4; transient receptor potential cation channel subfamily C member 4

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021582383.2 True 2802 mRNA 0.53 15 14878362 14913662

Neighbor


gene id symbol gene type direction distance location
LOC110503830 LOC106612876 coding downstream 4836 14839172 ~ 14873526 (-)
rsf1a LOC106612877 coding downstream 118189 14740571 ~ 14760173 (-)
LOC110503827 LOC106612879 coding downstream 143724 14728963 ~ 14734638 (-)
LOC110503826 LOC106612881 coding downstream 157543 14703576 ~ 14720819 (-)
LOC110503346 LOC106580992 coding downstream 180923 14687807 ~ 14697439 (-)
LOC110503833 LOC106612871 coding upstream 193717 15107379 ~ 15148479 (-)
LOC110503834 LOC106612757 coding upstream 239201 15152863 ~ 15167618 (-)
LOC110503835 LOC106612869 coding upstream 257278 15170940 ~ 15179778 (-)
LOC110503349 LOC106612868 coding upstream 338795 15252457 ~ 15298489 (-)
LOC110503839 LOC106612868 coding upstream 501875 15415537 ~ 15443172 (-)
G1905428 NA non-coding downstream 87965 14789970 ~ 14790397 (-)
LOC110503824 NA non-coding downstream 191390 14624102 ~ 14686972 (-)
ompa LOC106612885 non-coding downstream 194357 14639806 ~ 14684005 (-)
G1905350 NA non-coding downstream 256468 14621680 ~ 14621894 (-)
G1905732 NA non-coding upstream 12152 14925814 ~ 14926212 (-)
G1905742 NA non-coding upstream 33564 14947226 ~ 14947452 (-)
G1905756 LOC106612873 non-coding upstream 62397 14976059 ~ 14977116 (-)
G1905762 NA non-coding upstream 72929 14986591 ~ 14987047 (-)
G1905764 NA non-coding upstream 74596 14988258 ~ 14988491 (-)
G1905324 LOC106612883 other downstream 223088 14622195 ~ 14655274 (-)
G1905348 NA other downstream 256990 14619663 ~ 14621372 (-)
G1904919 NA other downstream 663842 14180063 ~ 14214520 (-)
G1904877 NA other downstream 735634 14089722 ~ 14142728 (-)
G1904846 spg20 other downstream 834913 14042970 ~ 14043449 (-)
G1905737 NA other upstream 27028 14940690 ~ 14941172 (-)
G1905741 NA other upstream 32336 14945998 ~ 14946447 (-)
G1905780 NA other upstream 169647 15083309 ~ 15084752 (-)
G1906115 NA other upstream 440278 15353940 ~ 15354573 (-)

Expression



Co-expression Network