LOC110503840 (LOC106612866)


Basic Information

Item Value
gene id LOC110503840
gene name LOC106612866
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 15599083 ~ 15631487 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582394.2
gagccAAATAATTCTTTTTTGTGTTTCCAAGAAAAAATCACGCACCAAGTTCGTTCTCTCTAACGCTCAAACCGCACTGCTAACGCGCAGAGCATGCTACAGTTCAGTTCACGAGCTGTTGAATCACATCAAGGCAGGGTTAACACGGGCGCTCACGCGTGACCGGGAGTTTACTCGAGAACCGTTATACCGGAGAAAGATAAGCAAGTCTATTAAGATGAGATGCTGGACGACTTGCCCTAACTACGTCTCAATGGAACGTAACTTTCTGATATTTCCTTCGTGAAGACAGAAAATTACCATTTGGAAAATAAATGGATTCAAGCTTTTAATATTTCATGAGAGATGCTCCAGGAGAAGGCCTCAGCTGTGACGGATGACAGTGTGACTGGGGTCCAATCTGGAGGGCCAGATCTCAGCCCTGACTCCTCACACTTGGGCCTGCCTACAACTCCTAGCACCCCCCAGGGCAATGAGCCAGACCAGAATATTGAGAACATCAAGGTTCTTCTTCATGAGAGGGAGCTGTGGAAGAAGTTCCATGAGGCGGGAACAGAGATGATCATAACGAAAGCAGGCAGGAGGATGTTCCCCAGCTACAAGGTTAAAGTGACGGGCATGAACCCGAAAACGAAGTACATCCTCCTCACAGACATTGTCCCCGCCGACGACCATCGCTACAAGTTCTGTGACAACAAGTGGATGGTGGCAGGCAAGGCGGAGCCAGCCATGCCAGGGAGGCTCTATGTCCACCCAGACTCCCCAGCTACAGGAGCCCACTGGATGAGGCAGCTGGTGTCCTTTCAGAAGCTAAAACTCACCAACAACCACCTGGACCCCTTTGGGCATATCATCCTGAACTCGATGCACAAGTACCAGCCTCGGCTCCACATCGTCAAGGCCGACGAGAACAACGCCTTTGGGTCTAAGAACACAGCCTACTGCACTCACGTGTTTCACGAGACAGCCTTCATCTCTGTCACCTCCTACCAGAACCATAAGATAACTCAGCTGAAGATCGAGAACAACCCGTTTGCCAAGGGTTTCCGTGGTAGCGACGAAGGGGACCTGCGTGTCTCCAGACTCCAGGGAAAAGACTACCCAGTGATTTCTAAGAACATGGTTCGCCAGAGGCTCCTCTCCTCACATGGTCACCGGACGGGGAAGCTGGGAGCTGGGGTGCACCTGTCGGGGCACCCCCAGGTCCTCTCCCACTACCAGTACGAGGGTGGGGTGCCCCTGGGGAACTCAGACCACCAGGAACACATCTCCAATTCCTTCCCTCCAAGCCGAGAGCCCAGCCTGCTCTACCACTGCTTCAAACACAGAGATAACACCAGGCACTTGGAACTGGGTTGTAAACGGCCATATCTGGACACAGCACTTCCAGCAGTCTCAGAGGAACACTACTTCTGCTCTCCTCCCACCTACgagcctccactgctgtcccacCCCTATTGCGGTGAGGCCATAAGCTCCAGGGAGGCCTGTATgtacggagggatggagggagagaacggGCACGGGGCTGGGGGTGCTGACGACCTGGCTCCCCCCTCTCTGAACTGCAACATGTGGGCGTCGGTGCAGCCTTACCCGCGGTACAGCGTGCAGACAGTGGAGGCTGTCCCCTACCAGCCCTTCACTGCTCACTTCACCAGTACTGCCACCGCCACCTCCGTGGTGCCCCACCACACCCCCACCGGACCCCCTCGCCCCCAGTCCGACATAGGAATTTACAGTCCAGCCACAGCACAGCGAGGCCTGGCCACCATCCCCTCGTCGTCCTCCATCTCGTCTTCCTCTCCACCGGTTCCTGGTTCCAGGGGTAGCAGGCCGGTGGTCCAACCTCCTCTGTACCACAGGAAGCCTGGGCCTGGGTCTCCTCTCCGGCCTCACAGGGAGTTCTCGGCCTTCCCAACACAGAGCACCCTCCCATCCATCCGGGACCCGTCCTACCAGTACCAGATGGGGCAGAGCAGTGTAGGGGCCCACTGGAATGATAGCTAGGGCTAGGGAGTGCTGTGTGGCTCCTGAGGCAGCGGCAATGTCCACCCATCCGGTCAGTTCAgaatcagccagccagccaactttGAACTGCCTGTGAGGCATCTGAAATTAGATTATGTTGAAATACAGCCATGATGACCATGATGAAGCCATAGTAGTTTAGCATGAGGAGAAGCAGATCAGAGTGACCAAACTCCAATAGAAGCCTACATCTGCCTAAAAGATCTGCTCCTTCAGATCCATGTTGTCCTGACTGGAGGAGCATTGTGCCTGTGATGATGATAATGAGTATTCCAGAGGAAGAACCCCTCTATAGAATTATGCAAAAGCTTGCCATATAATGGCTTAAAAAAATCATCTAAAACGTTCAATGTCAAACTGCCAAAAGGAGATGTGTTCAGCAAAGTGAAAAATATCCATTATGCCTTTGAAGTAGTGTGTTTATGGTAAAGATGGACAAGTACCAGTAATGAATTGATTAAGGTTTCtaagaaaaacatttaaatgcaAAACTTGATCATATTATTATCAGCAAACGAGGGAGTGGGACATGGATGTGTATGTGTAAAGAGATTGAAGTAACAGGCCAAGTGTTTTGTTGAAACTTTGAGTAAAGCCTTCATTTAATTTTGCAATCTCTGCTTGTATTGAGATACATTGCCAGTTAGAAATCTGTTGAACTTGTAAACATGGGCTGCAGGTAAACTACACAACAAGCCCACCCATGCAGTCCATTTGAGCAGAGCTTAAGTGagtgtagttctagatctcatcTTCAACCATACTCCTCTGCTAGCCATATTGTAAGCTAGCGTGACACTACTAAGCATGAAGCCAAACGGCCCTTAGTTAGCGGTAACCCAAGTCTTTGAACCACAATAGGGCAGTAATCACTTAGCACTTTGGCTCCAAACCTGCGGTCCGTTCCGAAGCAGCGTTCCCGCCTGTTGAAGTGAGACTTCAGAGAAGGTCCCTGGCCAACCAGATGGGAGCTTAAGGAATCATTGTTAAGCCAACGCTAGTGCAGAACACAGAGCTCCGCACAAATCCCAGCCCCAAATGACTGCGTTGGAAAAATCCTTACAAGACTGCAAATGTAAAACAGCCCGAGTGGGGCGGGCGAGGAGCCACATTGTGAAGTCAAGCTGAGCTGAACTGAAGCAGGGACGACTGGGTAACATTCAGCCCGGCCTGTCTGACCTTGATAAGTAGGGATGGGTAATAATAGAACAATATGGTGGGTCTATTACCTAGCAGACCCACATTATCTCTTCATTATTACATGTTTTTTCTCCATATAACTTCTTTGAATTTTTTTTCTCCCAAACATGATGAAATAAATATTTGAATGCCTCCCATTGTTGCTTAGCGTTATGTAAAACAAATAAACAGTCAACAGAGTACCTTTGCGGATGTATTGCACTGGTAATAATGTTAATGGTTATTACCTTGGCTATCTTGGATTCAGTCTGAATTTAACTTCCGTCTATCCTCCACTAGCACTTCTTGTCATTGGTGATCTAAGACACATAGGCTCACATCAATCATtacgggcggcaggtagcctagcaggttagagcgttgggcccacagaaatataaattatatttctaTTGTTGGGCCAGTCACCAAAAGGTCGCTAGTTCGAATCCTCTAGCCCGACAAGGTGAAACGTCtttcgatgtgcccttgagcaaggcacttaaccctaattgctccagggtcgccgCAGATAATGGAAAATCCTGGCCATGACCCCACTCACCGAGGGTGTCTCGGGGAGaggtgggatatgcaaaaaaacacatttccaattcacagtTGTACATTTGTGTAATAGGACaaataagcacccaccaaattattattattaaaaaccAATCAAGCTATCAACGACATTTTTAAACATTAACAACTACACCCACCtaaatggcatcaaaccatgaaCATTGACTGGGTTAGTTAGTTATCTGTCAAGTGAGATAATTTGTGTGTATGTCATatgtcagtgtatgtgtgtgtatgtgtgtcagggCAGCTGGCtggacagtacagtatgtaaatgAATGGGTGAGGTACAACATCCCAGGGCATACATACATACCGGTACTGTAGCCCTCTGCTTTCTCACACACAGCAATCATTAGGGTCCTGAGTTATGGTTCTGCCCTGGCTCTTGTCagtgcctcctctctctctctcttccttgttctctctctctcttgccttcattctttctctcaccctcattctctttctctgtctctaggaGAACTTCCCACTCCAACAAATCAATGTTCAGAGATCTAGGGTCTTCAAACAGGATGAAATGTCTACCTTGTCAAACGGTGGGTGAGAGGTGCTTATTTTTTGTAAACAGAGATCATGTTAGTATCTTGAACATTAATTACATTTGTACTTAACATGACAGTGGCTATGCATGTATTTCCCATATGCTGTATAGGCAACTTAGGTTAAGTATACACTTTTACTGGTGTGACAAACATCCCACAATACATACACcacagataaaataaataaagataatttCCTCTCTGAAA
>XM_036962006.1
CACCACAACTCCACTGGACTCCTGTTCCTAATTTCTACACCACGTGACGGTGGGAGTGAGTCAAATTTAAACTCCTTCAGAAACCCAACTCAATTCAGCTCCTATAAAAAAATTCAACCATTTTATAACAGAGGCATCTTCTATACCACGGCGAATGAGGTTTGTCCTTGTGGGACTAAGATTCCCTGAAGAAAAGCACAGCTAAAGGGGAGTACAGAGCAGAGGTCAAGTTCGTGTGAAGGGCAGAGCAATAACGTGGAGAGATGCTCCAGGAGAAGGCCTCAGCTGTGACGGATGACAGTGTGACTGGGGTCCAATCTGGAGGGCCAGATCTCAGCCCTGACTCCTCACACTTGGGCCTGCCTACAACTCCTAGCACCCCCCAGGGCAATGAGCCAGACCAGAATATTGAGAACATCAAGGTTCTTCTTCATGAGAGGGAGCTGTGGAAGAAGTTCCATGAGGCGGGAACAGAGATGATCATAACGAAAGCAGGCAGGAGGATGTTCCCCAGCTACAAGGTTAAAGTGACGGGCATGAACCCGAAAACGAAGTACATCCTCCTCACAGACATTGTCCCCGCCGACGACCATCGCTACAAGTTCTGTGACAACAAGTGGATGGTGGCAGGCAAGGCGGAGCCAGCCATGCCAGGGAGGCTCTATGTCCACCCAGACTCCCCAGCTACAGGAGCCCACTGGATGAGGCAGCTGGTGTCCTTTCAGAAGCTAAAACTCACCAACAACCACCTGGACCCCTTTGGGCATATCATCCTGAACTCGATGCACAAGTACCAGCCTCGGCTCCACATCGTCAAGGCCGACGAGAACAACGCCTTTGGGTCTAAGAACACAGCCTACTGCACTCACGTGTTTCACGAGACAGCCTTCATCTCTGTCACCTCCTACCAGAACCATAAGATAACTCAGCTGAAGATCGAGAACAACCCGTTTGCCAAGGGTTTCCGTGGTAGCGACGAAGGGGACCTGCGTGTCTCCAGACTCCAGGGAAAAGACTACCCAGTGATTTCTAAGAACATGGTTCGCCAGAGGCTCCTCTCCTCACATGGTCACCGGACGGGGAAGCTGGGAGCTGGGGTGCACCTGTCGGGGCACCCCCAGGTCCTCTCCCACTACCAGTACGAGGGTGGGGTGCCCCTGGGGAACTCAGACCACCAGGAACACATCTCCAATTCCTTCCCTCCAAGCCGAGAGCCCAGCCTGCTCTACCACTGCTTCAAACACAGAGATAACACCAGGCACTTGGAACTGGGTTGTAAACGGCCATATCTGGACACAGCACTTCCAGCAGTCTCAGAGGAACACTACTTCTGCTCTCCTCCCACCTACgagcctccactgctgtcccacCCCTATTGCGGTGAGGCCATAAGCTCCAGGGAGGCCTGTATgtacggagggatggagggagagaacggGCACGGGGCTGGGGGTGCTGACGACCTGGCTCCCCCCTCTCTGAACTGCAACATGTGGGCGTCGGTGCAGCCTTACCCGCGGTACAGCGTGCAGACAGTGGAGGCTGTCCCCTACCAGCCCTTCACTGCTCACTTCACCAGTACTGCCACCGCCACCTCCGTGGTGCCCCACCACACCCCCACCGGACCCCCTCGCCCCCAGTCCGACATAGGAATTTACAGTCCAGCCACAGCACAGCGAGGCCTGGCCACCATCCCCTCGTCGTCCTCCATCTCGTCTTCCTCTCCACCGGTTCCTGGTTCCAGGGGTAGCAGGCCGGTGGTCCAACCTCCTCTGTACCACAGGAAGCCTGGGCCTGGGTCTCCTCTCCGGCCTCACAGGGAGTTCTCGGCCTTCCCAACACAGAGCACCCTCCCATCCATCCGGGACCCGTCCTACCAGTACCAGATGGGGCAGAGCAGTGTAGGGGCCCACTGGAATGATAGCTAGGGCTAGGGAGTGCTGTGTGGCTCCTGAGGCAGCGGCAATGTCCACCCATCCGGTCAGTTCAgaatcagccagccagccaactttGAACTGCCTGTGAGGCATCTGAAATTAGATTATGTTGAAATACAGCCATGATGACCATGATGAAGCCATAGTAGTTTAGCATGAGGAGAAGCAGATCAGAGTGACCAAACTCCAATAGAAGCCTACATCTGCCTAAAAGATCTGCTCCTTCAGATCCATGTTGTCCTGACTGGAGGAGCATTGTGCCTGTGATGATGATAATGAGTATTCCAGAGGAAGAACCCCTCTATAGAATTATGCAAAAGCTTGCCATATAATGGCTTAAAAAAATCATCTAAAACGTTCAATGTCAAACTGCCAAAAGGAGATGTGTTCAGCAAAGTGAAAAATATCCATTATGCCTTTGAAGTAGTGTGTTTATGGTAAAGATGGACAAGTACCAGTAATGAATTGATTAAGGTTTCtaagaaaaacatttaaatgcaAAACTTGATCATATTATTATCAGCAAACGAGGGAGTGGGACATGGATGTGTATGTGTAAAGAGATTGAAGTAACAGGCCAAGTGTTTTGTTGAAACTTTGAGTAAAGCCTTCATTTAATTTTGCAATCTCTGCTTGTATTGAGATACATTGCCAGTTAGAAATCTGTTGAACTTGTAAACATGGGCTGCAGGTAAACTACACAACAAGCCCACCCATGCAGTCCATTTGAGCAGAGCTTAAGTGagtgtagttctagatctcatcTTCAACCATACTCCTCTGCTAGCCATATTGTAAGCTAGCGTGACACTACTAAGCATGAAGCCAAACGGCCCTTAGTTAGCGGTAACCCAAGTCTTTGAACCACAATAGGGCAGTAATCACTTAGCACTTTGGCTCCAAACCTGCGGTCCGTTCCGAAGCAGCGTTCCCGCCTGTTGAAGTGAGACTTCAGAGAAGGTCCCTGGCCAACCAGATGGGAGCTTAAGGAATCATTGTTAAGCCAACGCTAGTGCAGAACACAGAGCTCCGCACAAATCCCAGCCCCAAATGACTGCGTTGGAAAAATCCTTACAAGACTGCAAATGTAAAACAGCCCGAGTGGGGCGGGCGAGGAGCCACATTGTGAAGTCAAGCTGAGCTGAACTGAAGCAGGGACGACTGGGTAACATTCAGCCCGGCCTGTCTGACCTTGATAAGTAGGGATGGGTAATAATAGAACAATATGGTGGGTCTATTACCTAGCAGACCCACATTATCTCTTCATTATTACATGTTTTTTCTCCATATAACTTCTTTGAATTTTTTTTCTCCCAAACATGATGAAATAAATATTTGAATGCCTCCCATTGTTGCTTAGCGTTATGTAAAACAAATAAACAGTCAACAGAGTACCTTTGCGGATGTATTGCACTGGTAATAATGTTAATGGTTATTACCTTGGCTATCTTGGATTCAGTCTGAATTTAACTTCCGTCTATCCTCCACTAGCACTTCTTGTCATTGGTGATCTAAGACACATAGGCTCACATCAATCATtacgggcggcaggtagcctagcaggttagagcgttgggcccacagaaatataaattatatttctaTTGTTGGGCCAGTCACCAAAAGGTCGCTAGTTCGAATCCTCTAGCCCGACAAGGTGAAACGTCtttcgatgtgcccttgagcaaggcacttaaccctaattgctccagggtcgccgCAGATAATGGAAAATCCTGGCCATGACCCCACTCACCGAGGGTGTCTCGGGGAGaggtgggatatgcaaaaaaacacatttccaattcacagtTGTACATTTGTGTAATAGGACaaataagcacccaccaaattattattattaaaaaccAATCAAGCTATCAACGACATTTTTAAACATTAACAACTACACCCACCtaaatggcatcaaaccatgaaCATTGACTGGGTTAGTTAGTTATCTGTCAAGTGAGATAATTTGTGTGTATGTCATatgtcagtgtatgtgtgtgtatgtgtgtcagggCAGCTGGCtggacagtacagtatgtaaatgAATGGGTGAGGTACAACATCCCAGGGCATACATACATACCGGTACTGTAGCCCTCTGCTTTCTCACACACAGCAATCATTAGGGTCCTGAGTTATGGTTCTGCCCTGGCTCTTGTCagtgcctcctctctctctctcttccttgttctctctctctcttgccttcattctttctctcaccctcattctctttctctgtctctaggaGAACTTCCCACTCCAACAAATCAATGTTCAGAGATCTAGGGTCTTCAAACAGGATGAAATGTCTACCTTGTCAAACGGTGGGTGAGAGGTGCTTATTTTTTGTAAACAGAGATCATGTTAGTATCTTGAACATTAATTACATTTGTACTTAACATGACAGTGGCTATGCATGTATTTCCCATATGCTGTATAGGCAACTTAGGTTAAGTATACACTTTTACTGGTGTGACAAACATCCCACAATACATACACcacagataaaataaataaagataatttCCTCTCTGAAA

Function

NR:

description
T-box transcription factor TBX4-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10178 TBX4; T-box protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582394.2 False 4571 mRNA 0.48 9 15599083 15629175
XM_036962006.1 True 4489 mRNA 0.48 9 15599083 15631487

Neighbor

gene id symbol gene type direction distance location
LOC110503839 LOC106612868 coding downstream 155911 15415537 ~ 15443172 (-)
LOC110503349 LOC106612868 coding downstream 300594 15252457 ~ 15298489 (-)
LOC110503835 LOC106612869 coding downstream 419305 15170940 ~ 15179778 (-)
LOC110503834 LOC106612757 coding downstream 431465 15152863 ~ 15167618 (-)
LOC110503833 LOC106612871 coding downstream 450604 15107379 ~ 15148479 (-)
LOC110503841 LOC106612865 coding upstream 23064 15654551 ~ 15664281 (-)
LOC110503843 bcas3 coding upstream 46833 15678320 ~ 16028674 (-)
LOC110503846 NA coding upstream 406381 16036987 ~ 16044740 (-)
slc46a1 slc46a1 coding upstream 501677 16133164 ~ 16138513 (-)
LOC110503852 LOC106612852 coding upstream 566559 16198046 ~ 16224497 (-)
G1906335 NA non-coding downstream 392 15598426 ~ 15598691 (-)
G1906330 NA non-coding downstream 5244 15593605 ~ 15593839 (-)
G1906317 NA non-coding downstream 13691 15585168 ~ 15585392 (-)
G1906298 NA non-coding downstream 28386 15570462 ~ 15570697 (-)
G1906211 NA non-coding downstream 90195 15508275 ~ 15508888 (-)
G1906387 NA non-coding upstream 3413 15634900 ~ 15635262 (-)
G1906388 NA non-coding upstream 4876 15636363 ~ 15636584 (-)
G1906390 NA non-coding upstream 6902 15638389 ~ 15638655 (-)
G1907716 NA non-coding upstream 10275 15641762 ~ 15642032 (-)
G1907722 NA non-coding upstream 12593 15644080 ~ 15644310 (-)
G1906218 NA other downstream 85990 15512359 ~ 15513093 (-)
G1906198 NA other downstream 98323 15500204 ~ 15500760 (-)
G1906115 NA other downstream 244510 15353940 ~ 15354573 (-)
G1905780 NA other downstream 514331 15083309 ~ 15084752 (-)
G1907922 NA other upstream 500503 16131990 ~ 16132562 (-)
G1907951 NA other upstream 527359 16158846 ~ 16161226 (-)
LOC118944080 LOC106612823 other upstream 1646320 17277554 ~ 17278524 (-)
LOC110503924 LOC107554284 other upstream 2800537 18432024 ~ 18434798 (-)

Expression


Co-expression Network