Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110503848 |
| gene name | LOC106612859 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048588.1 |
| NCBI id | CM023242.2 |
| chromosome length | 45930806 |
| location | 16093739 ~ 16102902 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| scavenger receptor class F member 1-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036961546.1 | False | 4988 | mRNA | 0.54 | 14 | 16093739 | 16102902 |
| XM_036961545.1 | False | 4771 | mRNA | 0.54 | 13 | 16094233 | 16102902 |
| XM_036961547.1 | False | 4716 | mRNA | 0.54 | 14 | 16094233 | 16102902 |
| XM_036961548.1 | True | 4040 | mRNA | 0.55 | 11 | 16095228 | 16102902 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110503847 | LOC106612860 | coding | upstream | 1057 | 16073800 ~ 16092682 (+) |
| prpf8 | LOC106612861 | coding | upstream | 22483 | 16045677 ~ 16071256 (+) |
| LOC110503842 | NA | coding | upstream | 417308 | 15664534 ~ 15715864 (+) |
| LOC110503455 | NA | coding | upstream | 545740 | 15533028 ~ 15547999 (+) |
| LOC110503350 | brip1 | coding | upstream | 563327 | 15505408 ~ 15530412 (+) |
| LOC110503849 | LOC106612856 | coding | downstream | 14793 | 16117695 ~ 16130157 (+) |
| LOC118944076 | NA | coding | downstream | 35249 | 16138151 ~ 16142416 (+) |
| LOC110503851 | LOC106612854 | coding | downstream | 45158 | 16148060 ~ 16158430 (+) |
| LOC110503351 | LOC106612922 | coding | downstream | 79767 | 16182669 ~ 16194804 (+) |
| cryba1a | LOC106612851 | coding | downstream | 132038 | 16234940 ~ 16239647 (+) |
| G1906636 | NA | non-coding | upstream | 49401 | 16043170 ~ 16044338 (+) |
| G1906530 | NA | non-coding | upstream | 177366 | 15911362 ~ 15916373 (+) |
| G1906506 | NA | non-coding | upstream | 220851 | 15862288 ~ 15872888 (+) |
| G1906495 | NA | non-coding | upstream | 243057 | 15849799 ~ 15850682 (+) |
| G1906451 | NA | non-coding | upstream | 339173 | 15753868 ~ 15754566 (+) |
| G1906666 | NA | non-coding | downstream | 7227 | 16110129 ~ 16110501 (+) |
| G1906654 | NA | non-coding | downstream | 29204 | 16132106 ~ 16132564 (+) |
| G1906674 | NA | non-coding | downstream | 41793 | 16144695 ~ 16144926 (+) |
| G1906683 | NA | non-coding | downstream | 60199 | 16163101 ~ 16643821 (+) |
| G1906651 | NA | non-coding | downstream | 92944 | 16195846 ~ 16198046 (+) |
| G1905925 | NA | other | upstream | 839952 | 15252459 ~ 15253787 (+) |
| LOC110503347 | LOC106612880 | other | upstream | 1369857 | 14721462 ~ 14729123 (+) |
| G1904704 | LOC106612894 | other | upstream | 1788260 | 14305187 ~ 14305479 (+) |
| G1904683 | NA | other | upstream | 1824039 | 14269284 ~ 14269700 (+) |
| G1904563 | NA | other | upstream | 2095126 | 13996247 ~ 13998613 (+) |
| G1906824 | NA | other | downstream | 317996 | 16420898 ~ 16422094 (+) |
| G1907362 | NA | other | downstream | 1335178 | 17438080 ~ 17481230 (+) |
| LOC110503898 | LOC106612918 | other | downstream | 1575004 | 17672206 ~ 17678960 (+) |
| G1909085 | NA | other | downstream | 1996480 | 18099382 ~ 18106291 (+) |
| LOC110503911 | nek8 | other | downstream | 1999052 | 18090022 ~ 18110579 (+) |
