LOC110503852 (LOC106612852)


Basic Information

Item Value
gene id LOC110503852
gene name LOC106612852
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 16198046 ~ 16224497 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961985.1
GTCATCACCACCGCACGCGCGCTCCAAGCGCAAGGGCTATTCAGCCGCCGCACACAAACAGTCACGGACCAACGGGTTTAAAGAACTGAGGATTTAAATTAAATACCGAGTGTGAGAGACGTTGAGCCTTGggtgagggagggaaagagactgATTTGTATCTTCCCCAGATCGGGAGGGGGAGGAGGCACGGAGAATGAGCTATTATTGTACCAGCACAGAGGCTGTGTGTAATAGCCAGGACGCACCTAACGCCAGTGCGAGGAAAGCAGCTACTAATAATACGAACCGTGGCAGCGAAGGTCTcgagagcagcagcagcactagttCACGGCAGTCGCAACCCCAACCGCTCGTGGCCATGAAAGTGAAGAAAGGCTGCAACTCGACAGATGCTGGGGTCCCGGTTACAAGTGAGGACGAGTTGCTAAGAAACCCCGTAATATCGCCTGAGGATGTACTTGGGTTACAAAAGATCACCGAAAACTACCTATGTTCCCCAGAGGAGAACGTTCACATGATCGACTTCACACGGTTCAAGATCCGAGACATGGAGACAGGGACGGTGCTGTTTGAGATCACTAAACCCCCTGTACCAGCAGGCGAAAAGAAGGATTTTGACCCCAACGGAGGCCGCTTCGTCCGTTACCAGTTCACCCCTGCCTTCCTGCAGTTGCGCCAGGTCGGCGCCACTGTGGAGTTCACAGTGGGAGACATGCCCATCAACAACTTCAGGATGATTGAGAGGCACTACTTCAGAGAGCAGCTCCTCAAAAGCTTTGATTTTGAGTTTGGTTTCTGTATGCCCAGCAGCAAGAACACCTGTGAACACATCTACGAGTTCCCCCCTCTGTCAGAGGACATCAtgCGCGAGATGATCCTGCACCCATACAAAACGCAGTCCGACAGCTTCTACTTTGTGGACAACAAGCTGGTGATGCACAACAAGGCAGACTACTCCTACAGTGGGAGTCCGTAGGAGCACAGGACTTCCCTAGacacctagacccactccaactcTAACCCACCCCACCATAGGaccatggacagacagacagacagacagacagacagacagacagacagacagacgacaaaCGGAGAGACGTATGGACGGACTGACAGGTCACAAGCAGCAGGACTGATGGACAGCCTCGCACTCTCAGCAGCTTTATTTTCTCCAATCAGAATTCCTCCGTTGCTTGTCATCCCCTCAATTGCAATCCCCTACTCCAGTCTCTTTCAATGACCTCTCAACTTTCTGTGTCTGATAGAGAGTGTTATAGATGTGTACACAGTCtagcatacataaacacacacagaccttcGCTATGGGACACGTCTGATGTGGCCTGATCTAGACAAATTAAAAGCACAACCAGTAGAGTATATAAGGGCCAGTAACAATGAGTGAGATTGAATGTCTAGTCAGTGAGTTCTCAGTCAGTCAGctaaagagaaaaagagaaagggagagagagataagaagagacagaaaaaatgaagagagcgagaaagagagatagaatgTCTGCTTTTCTGCACTTCATCTCATTgacatttacagtaccagtcaaaggtttggacacacctactcattcaagggttttacatgactattttctacattgtagaataatagtgaagacatcaaaactatgaaatagc

Function

NR:

description
protein unc-119 homolog A-like

GO:

id name namespace
GO:0007601 visual perception biological_process
GO:0070121 Kupffer's vesicle development biological_process

KEGG:

id description
K23539 UNC119; protein unc-119

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961985.1 True 1668 mRNA 0.49 5 16198046 16224497

Neighbor

gene id symbol gene type direction distance location
slc46a1 slc46a1 coding downstream 59533 16133164 ~ 16138513 (-)
LOC110503846 NA coding downstream 153306 16036987 ~ 16044740 (-)
LOC110503843 bcas3 coding downstream 169372 15678320 ~ 16028674 (-)
LOC110503841 LOC106612865 coding downstream 533765 15654551 ~ 15664281 (-)
LOC110503840 LOC106612866 coding downstream 566559 15599083 ~ 15631487 (-)
LOC110503854 LOC106612853 coding upstream 3074 16227571 ~ 16234629 (-)
LOC110503859 LOC106612846 coding upstream 168779 16393276 ~ 16407374 (-)
aipl1 LOC106612843 coding upstream 189188 16413685 ~ 16422281 (-)
abhd15a LOC106612842 coding upstream 281515 16506012 ~ 16515306 (-)
LOC110503865 rflnb coding upstream 331265 16555762 ~ 16558682 (-)
G1907962 NA non-coding downstream 12558 16185035 ~ 16185488 (-)
G1907914 NA non-coding downstream 66799 16130812 ~ 16131247 (-)
G1907940 NA non-coding downstream 82619 16115049 ~ 16115427 (-)
G1907939 NA non-coding downstream 85285 16112406 ~ 16112761 (-)
G1907934 NA non-coding downstream 93179 16104503 ~ 16104867 (-)
G1908004 LOC106612850 non-coding upstream 38077 16262574 ~ 16264753 (-)
G1908067 NA non-coding upstream 103212 16327709 ~ 16328139 (-)
G1908029 NA non-coding upstream 236923 16461420 ~ 16476960 (-)
G1908202 LOC106612839 non-coding upstream 393475 16617972 ~ 16622138 (-)
G1908230 LOC106612838 non-coding upstream 411140 16635637 ~ 16641190 (-)
G1907951 NA other downstream 36820 16158846 ~ 16161226 (-)
G1907922 NA other downstream 65484 16131990 ~ 16132562 (-)
G1906218 NA other downstream 684953 15512359 ~ 15513093 (-)
G1906198 NA other downstream 697286 15500204 ~ 15500760 (-)
LOC118944080 LOC106612823 other upstream 1053310 17277554 ~ 17278524 (-)
LOC110503924 LOC107554284 other upstream 2207527 18432024 ~ 18434798 (-)
LOC110503944 LOC106612932 other upstream 2743565 18968062 ~ 19185772 (-)
G1910398 NA other upstream 2935952 19160449 ~ 19162158 (-)
G1910539 NA other upstream 3108344 19332841 ~ 19333225 (-)

Expression


Co-expression Network