LOC110503854 (LOC106612853)


Basic Information

Item Value
gene id LOC110503854
gene name LOC106612853
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 16227571 ~ 16234629 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582413.2
cgacccaaTAGTCAGCGTGGggatgtaaatgtatatatatccCTACTCTGGGGGCCTGATTCCAACTCTTAGGCTTATCCATCTGGATGTCCATTCCTCCCTTGTACCTGACAAGCAGCCACTTGATTCGACCATGTCCCACTCCGGAGCCCAGGGCAGCATTGGGAGCCACCCAGCCATGGGGCTGCGTGCCCACAAAATGTACCTGTTTGAGTTTGAGAACTTCCAGGGTCGTATGATGGAGTGCATCACTGAGTGCCGTAACCTGTGTGAGAAGGGCTTCGAGAAGATCGGCTCCATCAGGGTGGAGTGTGGACCCTGGGTGGGCTATGAGCAGCAGAACCTGAGTGGAGAGATGTTCATGCTGGAGAAGGGAGAGTACCCCCGCTGGGATACCTGGAGCAACAGCTATAGGTGTGACCGCTTCATGTCCGTCAGGCCTGTTCGCATGGACACCCAGGACCACAAGATATGCCTATTTGAGTGTAATAACTTTGAGGGCCGTAAGATGGAAGTTTGTGATGAGGATATCCCGAGTCTGTGGTCCTATGGCTTCCAGGACCGTGTGGCCAGCATCCAGGTCACTGGTGGAACTTGGGTTGGCTATCAGTACCCCGGTTACCGTGGCTACCAGTACGTGTTCGAGTGCGCCGTCTTCAAGCATTGGAACGAGTGGGGCGCCCACCATCCCCAGATCCAGTCCATCCGTAGAGTGAGGGATATGCAGACACATCGCAGAGGCTGCTTTGAGTGGACCGTCTAGATGGGGCCAGGCAGGCGACGGGTTGTGGGCCAGCAGGACAGAGGGGAAGGGGCCAGGCAGGCGACGGGTTGTGGGCCAgcaagacagagaggaaggggtcTGGCTAGCCCTGGAGCTAACCATTCCAGAGTCTAGAGTTCCATCTTGGATCTCCACACAGCCAACATAAGCTAACAGCTAATAACATAACATCACTGGCTCCACCTCAATCACTTACTAGTTGTAACATTCagggtgtgtgtactgtattgcACAATCGCTGAATGAAGACATTGCCACCTACTGGGAAAAGGTTGTTACTGCAGTTCACCTGCTGCTGACTTCCACAATGCCTGAATATAATAATACTGGTGAAACTGAAAGCTGTACTCTCTGTTCCAAGACCTGATAGAATTATAGCGTGAGAAGATTTAGGATGGGGATTTTAATGGGGTAAAGGGAATTAGTTAACAAAGATTTTAAGAAGTTATATAGCTTCATTAGTTTGTGTTCACTAGTTTGTTTCCATATCTGCAAACCCATTGATTTTATACATCTTACTTACTTGTTTCTTAGCTATATACCAAATGATGCCGAATAAGCCTGTTCATTACAATGCTCTACCCTCCTGCAATCTGTGAATGATTTTAGAGAGTAGAGATACTAGACACTCCACTCAAGCCAGTCCCTAAACTACCATGGACAGCTGCCAGCTCTGTGCTGTGTCCGTGCCCTACAGTGAGCTCAATCATCCACAGGGAAACACTGTTTACCAATGTACTCTCCCCATGGCCACCATCTAGTCTAGGGATTCCACCTCAACCATAATTTCCCTAATGACATTCTACCTTCAAGGCTTCAAAGCTATGCCCATGACCCACTCGGTTGAGGGCAGTGAAGCTTTCCAATGACCCACTCTATCTAGGGCAGTGACGCTATGCTCACGACCCACTCAGTCTAGGGTAACAGACTCAGTTTAAGGCAGTGAGGCTGTCTGAAGGAGGAAGTGAGCTAGGGGGTATGATTGGGAGACAGGCTGCTGTAGACTACCTGGTAGTGTTTTTCTAGACATGCCAACCTTTTGGGAGACCCCTCCCCCTCTTAATGATGGGGTTGCAGAGGAATGTtgttatatacactatatatttcTCAGGGATGCTGGCATCTGGAAATAAACTTTCCAATAAAAAAAACGAAGTGAAATTGATAAA
>XM_036962007.1
ttaacgtcccattcgAAAGaaagcaccctacacagggcaatatccccaatcactgccctggggcattggaatttttattttattttttgaccAGAAGAAAGACTGTCTCCTACTCGCCCTCCAACATCTCTTCCAGCAACATCTGGTCACCCATCCAGGATCAACGCTGTTTCGCTTGAGAGGCAAGCCAAAAGTCGGATGCAggatgATTCGACCATGTCCCACTCCGGAGCCCAGGGCAGCATTGGGAGCCACCCAGCCATGGGGCTGCGTGCCCACAAAATGTACCTGTTTGAGTTTGAGAACTTCCAGGGTCGTATGATGGAGTGCATCACTGAGTGCCGTAACCTGTGTGAGAAGGGCTTCGAGAAGATCGGCTCCATCAGGGTGGAGTGTGGACCCTGGGTGGGCTATGAGCAGCAGAACCTGAGTGGAGAGATGTTCATGCTGGAGAAGGGAGAGTACCCCCGCTGGGATACCTGGAGCAACAGCTATAGGTGTGACCGCTTCATGTCCGTCAGGCCTGTTCGCATGGACACCCAGGACCACAAGATATGCCTATTTGAGTGTAATAACTTTGAGGGCCGTAAGATGGAAGTTTGTGATGAGGATATCCCGAGTCTGTGGTCCTATGGCTTCCAGGACCGTGTGGCCAGCATCCAGGTCACTGGTGGAACTTGGGTTGGCTATCAGTACCCCGGTTACCGTGGCTACCAGTACGTGTTCGAGTGCGCCGTCTTCAAGCATTGGAACGAGTGGGGCGCCCACCATCCCCAGATCCAGTCCATCCGTAGAGTGAGGGATATGCAGACACATCGCAGAGGCTGCTTTGAGTGGACCGTCTAGATGGGGCCAGGCAGGCGACGGGTTGTGGGCCAGCAGGACAGAGGGGAAGGGGCCAGGCAGGCGACGGGTTGTGGGCCAgcaagacagagaggaaggggtcTGGCTAGCCCTGGAGCTAACCATTCCAGAGTCTAGAGTTCCATCTTGGATCTCCACACAGCCAACATAAGCTAACAGCTAATAACATAACATCACTGGCTCCACCTCAATCACTTACTAGTTGTAACATTCagggtgtgtgtactgtattgcACAATCGCTGAATGAAGACATTGCCACCTACTGGGAAAAGGTTGTTACTGCAGTTCACCTGCTGCTGACTTCCACAATGCCTGAATATAATAATACTGGTGAAACTGAAAGCTGTACTCTCTGTTCCAAGACCTGATAGAATTATAGCGTGAGAAGATTTAGGATGGGGATTTTAATGGGGTAAAGGGAATTAGTTAACAAAGATTTTAAGAAGTTATATAGCTTCATTAGTTTGTGTTCACTAGTTTGTTTCCATATCTGCAAACCCATTGATTTTATACATCTTACTTACTTGTTTCTTAGCTATATACCAAATGATGCCGAATAAGCCTGTTCATTACAATGCTCTACCCTCCTGCAATCTGTGAATGATTTTAGAGAGTAGAGATACTAGACACTCCACTCAAGCCAGTCCCTAAACTACCATGGACAGCTGCCAGCTCTGTGCTGTGTCCGTGCCCTACAGTGAGCTCAATCATCCACAGGGAAACACTGTTTACCAATGTACTCTCCCCATGGCCACCATCTAGTCTAGGGATTCCACCTCAACCATAATTTCCCTAATGACATTCTACCTTCAAGGCTTCAAAGCTATGCCCATGACCCACTCGGTTGAGGGCAGTGAAGCTTTCCAATGACCCACTCTATCTAGGGCAGTGACGCTATGCTCACGACCCACTCAGTCTAGGGTAACAGACTCAGTTTAAGGCAGTGAGGCTGTCTGAAGGAGGAAGTGAGCTAGGGGGTATGATTGGGAGACAGGCTGCTGTAGACTACCTGGTAGTGTTTTTCTAGACATGCCAACCTTTTGGGAGACCCCTCCCCCTCTTAATGATGGGGTTGCAGAGGAATGTtgttatatacactatatatttcTCAGGGATGCTGGCATCTGGAAATAAACTTTCCAATAAAAAAAACGAAGTGAAATTGATAAA

Function

NR:

description
beta-crystallin B3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582413.2 False 1953 mRNA 0.49 6 16227571 16232374
XM_036962007.1 True 2036 mRNA 0.49 6 16227571 16234629

Neighbor

gene id symbol gene type direction distance location
LOC110503852 LOC106612852 coding downstream 3074 16198046 ~ 16224497 (-)
slc46a1 slc46a1 coding downstream 89058 16133164 ~ 16138513 (-)
LOC110503846 NA coding downstream 182831 16036987 ~ 16044740 (-)
LOC110503843 bcas3 coding downstream 198897 15678320 ~ 16028674 (-)
LOC110503841 LOC106612865 coding downstream 563290 15654551 ~ 15664281 (-)
LOC110503859 LOC106612846 coding upstream 158647 16393276 ~ 16407374 (-)
aipl1 LOC106612843 coding upstream 179056 16413685 ~ 16422281 (-)
abhd15a LOC106612842 coding upstream 271383 16506012 ~ 16515306 (-)
LOC110503865 rflnb coding upstream 321133 16555762 ~ 16558682 (-)
LOC110503864 vps53 coding upstream 325131 16559760 ~ 16591432 (-)
G1907962 NA non-coding downstream 42083 16185035 ~ 16185488 (-)
G1907914 NA non-coding downstream 96324 16130812 ~ 16131247 (-)
G1907940 NA non-coding downstream 112144 16115049 ~ 16115427 (-)
G1907939 NA non-coding downstream 114810 16112406 ~ 16112761 (-)
G1907934 NA non-coding downstream 122704 16104503 ~ 16104867 (-)
G1908004 LOC106612850 non-coding upstream 27945 16262574 ~ 16264753 (-)
G1908067 NA non-coding upstream 93080 16327709 ~ 16328139 (-)
G1908029 NA non-coding upstream 226791 16461420 ~ 16476960 (-)
G1908202 LOC106612839 non-coding upstream 383343 16617972 ~ 16622138 (-)
G1908230 LOC106612838 non-coding upstream 401008 16635637 ~ 16641190 (-)
G1907951 NA other downstream 66345 16158846 ~ 16161226 (-)
G1907922 NA other downstream 95009 16131990 ~ 16132562 (-)
G1906218 NA other downstream 714478 15512359 ~ 15513093 (-)
G1906198 NA other downstream 726811 15500204 ~ 15500760 (-)
LOC118944080 LOC106612823 other upstream 1043178 17277554 ~ 17278524 (-)
LOC110503924 LOC107554284 other upstream 2197395 18432024 ~ 18434798 (-)
LOC110503944 LOC106612932 other upstream 2733433 18968062 ~ 19185772 (-)
G1910398 NA other upstream 2925820 19160449 ~ 19162158 (-)
G1910539 NA other upstream 3098212 19332841 ~ 19333225 (-)

Expression


Co-expression Network