LOC110503865 (rflnb)


Basic Information

Item Value
gene id LOC110503865
gene name rflnb
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 16555762 ~ 16558682 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582426.2
AAACTATGAAACCTTTTTGAAGGGAGAGAAGTTTGAAGACAGGTAGGCGTGGACAATCTTCAGTGCCTTCTCGTGTTCTTTTATACTTCAGTGCCCTTGACACACAGTTTGATTTCACTATTTTGTTAACTTCAAGGCCAACGATTTATGTTGAATCTCTTTATTTGGAAGGGCAAAAACATATTGGGGAGGAGAAATGTTCGTTGACTTGTGGAAGATTTAAATAGCATGCAGTACAATTTGTCTAGACCGTAGCCTATTGCGAAGCAAGAGAAGTTGATACAAGCCCATTGCCAACTTGCTTGATCATTGCAATGGTGGGCAGACTAAACTTGCTGAATGTATGTGACGACGAGCCATTGGACATGAGTTGCAAAGCCGAGCGGGGACTTGACAGCCCGGACTCCGGACTACCCTCCAGCCCCAGTCCGAGCCACTGGCTGCTGACAGATGGCGGGGATAAAGGTGCCATAAGCCCGGTGTCTGAAGACGAGAGGACACGGTCATCCTTGGTCCCTATTTTATCGATTGGATCTGTTCCTCAGCTGCACACGTTGTCCTACGGGGAGGGCATAGAACTTGATCCACTACCGTCCAAGGAAATACGATACACATCGTCTGTCCACTATGATTCAGAGCGTCACTTTATCCACGACGTGGCCATGCAGCCCAGAGGCCTGGGTCTGGAGAACTGCAGCCAGATGTTCCTGGCTGTCCCTCACAGCACCTGGAGACACTACAAGACCCAGCTAGACCTCCAGCCTCGCCAGCGGGCCCAGCATTTCCAGAGCACCACCATTGTCTACCCCAAGCACGCTCGCACCATCTACACCACAGAGCTGAGCTACGACAGCCACCGGCTAGCCAGGAGATTCTTGTCGAGCGTGGAGCTGGAGGCTGCTGACTGGAGAAGGCTACCCCATTGAGGTTGGGGGAAGGCTGGGCACGGCCTGAGGGAGAGGTCCCTGGGCCCTGTGGGGCCCAACCATCCACCAGGCCGACGCCACACATGGACCcaggttacacagtccattagTTTAGATTGGTACTCAAATGTGGGCTACGATACTTTCCAGGCTCCAGGAGGGCAGAAGATGGAAGCCATATCTCTAGATCTGGAGTATCAAACAAATAGCAGGGACATCTGAGTGAGGCTGCCATCTACCAAAGTGTTGATCCATTAGTAGCTAGTAAAGAGTTCTCTGGTATTCAAAGTTGGATTCATTTTAACCAAGTGTTGAACTGTGGACTTAGACAGGTGATGGTGTACTGTATACTATCACCATGGAGGAACTTATAAACCAGATTTGGAAGTGAAGGATTGTTAGGGAAGTGTAGTCTGGACCATCACTGTCAACATTCTGTGTTTAGGCCTAACCATTGCAGTGGAGCTCATTGAACAATGATCCAACAATATAAGATTCTAAGGCAATAGTGGAGTTTCCATGTGATTTTTGTAAGTATTTACATTTGTAGACCTGGGGAGTTGTCAAATTACTGTCTATGACTGGGCTTCAAAATGTCTTGTCAAATCATGGTATTATGGTGTATTTGTTGCACAACATTACTTACCACAAGCAGAATATATATTCCTGGATAGTGTAACACCGAGCCATGTATAGAGATGTATGATCCTGGTGTAACACCAAACCCCATCTAAGTCTTGCCTAAACCAACATTGTCTACTGTAAGTATGGTCATGGAGCAGAAAGCCACAGCTTTTTTCATATTGTGTAAAAGAGTTGCAAGTTCTGTGTTGAAAGTTGGGACATTTTTCTTCCCACAGACCATTGTGAATTGAAGAAGTTTGTGTTAGTTGGTAATGAGTAGTGAGAGATTATCAAATGTGTCATTATTGTTTTCAGTTATAAAGTTTTTGTATTTTCCTAATAGTGAAGTCTTGTTCTTACTAACACCTTATGGACTGTCCATAATCTTTGCCTATCCTCTTCTGGTTGCTTCCAGAGGTTTCATTTAGTTATGCATTTATTTGATGCTAATAAACTCCTTTTGGTAGCCTAATAGATTACTATTAGGCTACCAAACACAGGTAACTTCCCTCAAGGTCCTACAAGGATACACATCTAGAGGACCTGAACTGTCTTGAGATACCCAAAGGGCCTTATTGAAGTAAAATGATTTCGCTTTTAAAGCTCTGTTTTTATAGTGTTTGTTTGAAATAAAGACCAACTGTTTTATATCAGA
>XM_036961144.1
AAACTATGAAACCTTTTTGAAGGGAGAGAAGTTTGAAGACAGGTAGGCGTGGACAATCTTCAGTGCCTTCTCGTGTTCTTTTATACTTCAGTGCCCTTGACACACAGTTTGATTTCACTATTTTGTTAACTTCAAGGCCAACGATTTATGTTGAATCTCTTTATTTGGAAGGGCAAAAACATATTGGGGAGGAGAAATGTTCGTTGACTTGTGGAAGATTTAAATAGCATGCAGTACAATTTGTCTAGACCGTAGCCTATTGCGAAGCAAGAGAAGTTGATACAAGCCCATTGCCAACTTGCTTGATCATTGGTAAGTTACCCAACGTGAAGGATCAATTGCATTCAAGGGAAGTCGCGTCTACGAATTGGAAATCAATTTGACCTACAGTTCTGCAAACTCGTCGCGCAGTAGGGGTCGTCATTGTATTTTTTGACTTTTTTAAAATTAAAGCAATGGTGGGCAGACTAAACTTGCTGAATGTATGTGACGACGAGCCATTGGACATGAGTTGCAAAGCCGAGCGGGGACTTGACAGCCCGGACTCCGGACTACCCTCCAGCCCCAGTCCGAGCCACTGGCTGCTGACAGATGGCGGGGATAAAGGTGCCATAAGCCCGGTGTCTGAAGACGAGAGGACACGGTCATCCTTGGTCCCTATTTTATCGATTGGATCTGTTCCTCAGCTGCACACGTTGTCCTACGGGGAGGGCATAGAACTTGATCCACTACCGTCCAAGGAAATACGATACACATCGTCTGTCCACTATGATTCAGAGCGTCACTTTATCCACGACGTGGCCATGCAGCCCAGAGGCCTGGGTCTGGAGAACTGCAGCCAGATGTTCCTGGCTGTCCCTCACAGCACCTGGAGACACTACAAGACCCAGCTAGACCTCCAGCCTCGCCAGCGGGCCCAGCATTTCCAGAGCACCACCATTGTCTACCCCAAGCACGCTCGCACCATCTACACCACAGAGCTGAGCTACGACAGCCACCGGCTAGCCAGGAGATTCTTGTCGAGCGTGGAGCTGGAGGCTGCTGACTGGAGAAGGCTACCCCATTGAGGTTGGGGGAAGGCTGGGCACGGCCTGAGGGAGAGGTCCCTGGGCCCTGTGGGGCCCAACCATCCACCAGGCCGACGCCACACATGGACCcaggttacacagtccattagTTTAGATTGGTACTCAAATGTGGGCTACGATACTTTCCAGGCTCCAGGAGGGCAGAAGATGGAAGCCATATCTCTAGATCTGGAGTATCAAACAAATAGCAGGGACATCTGAGTGAGGCTGCCATCTACCAAAGTGTTGATCCATTAGTAGCTAGTAAAGAGTTCTCTGGTATTCAAAGTTGGATTCATTTTAACCAAGTGTTGAACTGTGGACTTAGACAGGTGATGGTGTACTGTATACTATCACCATGGAGGAACTTATAAACCAGATTTGGAAGTGAAGGATTGTTAGGGAAGTGTAGTCTGGACCATCACTGTCAACATTCTGTGTTTAGGCCTAACCATTGCAGTGGAGCTCATTGAACAATGATCCAACAATATAAGATTCTAAGGCAATAGTGGAGTTTCCATGTGATTTTTGTAAGTATTTACATTTGTAGACCTGGGGAGTTGTCAAATTACTGTCTATGACTGGGCTTCAAAATGTCTTGTCAAATCATGGTATTATGGTGTATTTGTTGCACAACATTACTTACCACAAGCAGAATATATATTCCTGGATAGTGTAACACCGAGCCATGTATAGAGATGTATGATCCTGGTGTAACACCAAACCCCATCTAAGTCTTGCCTAAACCAACATTGTCTACTGTAAGTATGGTCATGGAGCAGAAAGCCACAGCTTTTTTCATATTGTGTAAAAGAGTTGCAAGTTCTGTGTTGAAAGTTGGGACATTTTTCTTCCCACAGACCATTGTGAATTGAAGAAGTTTGTGTTAGTTGGTAATGAGTAGTGAGAGATTATCAAATGTGTCATTATTGTTTTCAGTTATAAAGTTTTTGTATTTTCCTAATAGTGAAGTCTTGTTCTTACTAACACCTTATGGACTGTCCATAATCTTTGCCTATCCTCTTCTGGTTGCTTCCAGAGGTTTCATTTAGTTATGCATTTATTTGATGCTAATAAACTCCTTTTGGTAGCCTAATAGATTACTATTAGGCTACCAAACACAGGTAACTTCCCTCAAGGTCCTACAAGGATACACATCTAGAGGACCTGAACTGTCTTGAGATACCCAAAGGGCCTTATTGAAGTAAAATGATTTCGCTTTTAAAGCTCTGTTTTTATAGTGTTTGTTTGAAATAAAGACCAACTGTTTTATATCAGA

Function

symbol description
rflnb Predicted to enable filamin binding activity. Predicted to be involved in several processes, including actin filament bundle organization; negative regulation of bone mineralization involved in bone maturation; and negative regulation of chondrocyte development. Predicted to act upstream of or within regulation of chondrocyte development. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be active in actin filament bundle. Orthologous to human RFLNB (refilin B).

NR:

description
refilin-B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582426.2 False 2205 mRNA 0.45 4 16555762 16558682
XM_036961144.1 True 2346 mRNA 0.44 3 16555762 16558682

Neighbor

gene id symbol gene type direction distance location
abhd15a LOC106612842 coding downstream 40456 16506012 ~ 16515306 (-)
aipl1 LOC106612843 coding downstream 133481 16413685 ~ 16422281 (-)
LOC110503859 LOC106612846 coding downstream 148388 16393276 ~ 16407374 (-)
LOC110503854 LOC106612853 coding downstream 321133 16227571 ~ 16234629 (-)
LOC110503852 LOC106612852 coding downstream 331265 16198046 ~ 16224497 (-)
LOC110503864 vps53 coding upstream 1078 16559760 ~ 16591432 (-)
LOC110503875 LOC106612835 coding upstream 274836 16833518 ~ 16913657 (-)
LOC110503880 LOC106612833 coding upstream 362425 16921107 ~ 16993293 (-)
LOC110503876 LOC106612831 coding upstream 434825 16993507 ~ 17087259 (-)
LOC110503884 psph coding upstream 652284 17210966 ~ 17217503 (-)
G1908029 NA non-coding downstream 78802 16461420 ~ 16476960 (-)
G1908067 NA non-coding downstream 227623 16327709 ~ 16328139 (-)
G1908004 LOC106612850 non-coding downstream 291009 16262574 ~ 16264753 (-)
G1907962 NA non-coding downstream 370274 16185035 ~ 16185488 (-)
G1907914 NA non-coding downstream 424515 16130812 ~ 16131247 (-)
G1908202 LOC106612839 non-coding upstream 59290 16617972 ~ 16622138 (-)
G1908230 LOC106612838 non-coding upstream 76955 16635637 ~ 16641190 (-)
G1908235 NA non-coding upstream 88653 16647335 ~ 16647565 (-)
G1908269 NA non-coding upstream 156484 16715166 ~ 16721539 (-)
G1908285 NA non-coding upstream 160674 16719356 ~ 16776811 (-)
G1907951 NA other downstream 394536 16158846 ~ 16161226 (-)
G1907922 NA other downstream 423200 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 511457 16036987 ~ 16044740 (-)
G1906218 NA other downstream 1042669 15512359 ~ 15513093 (-)
G1906198 NA other downstream 1055002 15500204 ~ 15500760 (-)
LOC118944080 LOC106612823 other upstream 719125 17277554 ~ 17278524 (-)
LOC110503924 LOC107554284 other upstream 1873342 18432024 ~ 18434798 (-)
LOC110503944 LOC106612932 other upstream 2409380 18968062 ~ 19185772 (-)
G1910398 NA other upstream 2601767 19160449 ~ 19162158 (-)
G1910539 NA other upstream 2774159 19332841 ~ 19333225 (-)

Expression


Co-expression Network