LOC110503864 (vps53)


Basic Information

Item Value
gene id LOC110503864
gene name vps53
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 16559760 ~ 16591432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961143.1
gatagagacagTGAAACACGTTCTATTTCAGTGTCAGAAATATGGGATGGAAAGAGAGCGATTGTTATTAGATTTGAGGTGTAATGGGGTTGAAGAGCCAAGATTAAGTGCACTTTTGGGGAAATCTTCAGTCGATGTAGCATTTAATTATGTATTTAGTTTCCTTAGGAAGACGATACTATTGGGTAGGATGTAGACCTTCCCTGGCTCTGGTCCACGCTCCAATCCAGTTAGTGACGGTAATACACCTTAATGTTGGTTGCCAAACGCCACTTaaaatccacagaagaagaagaagaacaaggtGAAGGAAGTGACCTGCCTCGGCTTTCTGCGGTAGTTTGCTAGCTGTGCATGATGATGGAGGAGGAAGAATTGGAATTTTCGGAGGatttggaggctattttgaatCTTACTCCAGAGGTGCAGTTGGCCATCGAGCAGGTTTTCCCCAGTCAAGACCCATTGGACAGAGCAGATTTTAATGCTGTGGAATACATCAATACATTGTTTCCCACTGAGCAGTCACTGGCAAATATAGATGATGTGGTCAACAAGATCCGTCTGAAGATTCGgcgtCTGGATGACAACATCAGGATGGTGGTGAGAGGTCAGACCAATGTGGGCCAGGATGGCAGACAGgcacTGGCAGAGGCCCAGGTAGCCATCGGCCAGCTCTTTGGCAAAATCAAAGACATTAAGGACAAGGCTGAGAAATCCGAGCAAATGgTCAAAGAGATAACGCGGGACATCAAACAGCTGGACCATGCTAAGCGTCACCTGaccacctccatcaccaccctCAACCACCTGCACATGCTGGCCGGGGGCGTTGACTCTCTAGAGGCCATGACGAGGAGGAGGCAGTATGGCGAGGTGGCTAACCTGCTACAGGGGGTGGTCAACGTGCTGGAACACTTCCACAAATACATGGGCATCCCTCAGATCAGACAGCTCTCAGAGAGGGTGAAAGCAGCCCAAAGTGAGCTGGGGACTCAGATCATGGCAGACTTCGAAGAGGCCTTCCCCGCTCAGGGGTCAAAGAGAGCAGGGGGACCCAGTAACGTTCTGAGGGATGCCTGTCTGGTGGCCAACGTCTTGGACCCTCGCATCAAACAGGAGATCATCAAGAAGTTCATCAGACAGCACCTCTCTGAGTACATGGTGCTCTTCCAGGAGAACCAGGACGTAGCTTGGCTGGATAAGATCGACCGGCGCTACGCCTGGATTAAGCGTCAGCTGGTGGACTATGAGGAGAAGTACGGACGCATGTTTCCTGAAGAGTGGTGTATGACCGAACGCATCGCTGTAGAGTTCTGCCACATCACcagGACAGAGCTGGCCAAAGTAATGCGGACGAGGGCCAAAGAGATTGAGGTCAAGCTGCTTCTGTTTGCCATTCAGAGGACCACCAACTTCGAGGGGCTGCTCGCCAAGCGCTTCTCTGGGTGCACCCTCACCGACGTGCCCgggGTGAAAAAGCCTGAGCCACCACTGGAGTCCACCAACCCTTTCCTGGAGGACGAGGTTGGAGATGATGGTTCAGAGATAGAGGAGGATCTGGATAGGCCCAAGAAGCACAAGGCTCCTGACAACCCCTTCCATGGCATTATTTCCAAGTGCTTTGAGCCTCACCTCTATGTCTACATCGAGTCTCAGGACaaGAACCTGGGGGAGATGATTGACCGTTTTGTGTCAGACTTCCGGGCGCAGGGCCCCCCCAAGGCGGGCACAGAGGACGGGGGAGCAGTGCTGCCCAGCTGTGCTGACCTGTTTGTCTACTATAAGAAGTGCATGGTGCAGTGCTCCCAGCTCAGCACAGGGGAACCTATGATCGCCCTCACCACCATCTTCCAGAAGTACCTCAGAGAGTATGCCTGGAAGATACTGTCTGGAAACCTGCCCAAgacTAGCAGTAATAGTGGAGGACTGACCATCAAGAGTCTACTGCAGGAGAAGGAGGGTTCGGAGGCTGCTAAGTTCAATGTAGAGGAGCTGTGTCTCATCTGTAGCATCCTCAGTACTGCAGAGTACTGTCTAGCCACCACACAGCAgTTGGAGGAGAAGCTGAAGGAGAAGGTGGATAAGACTCTAGTGGAGAGAATCAACCTGACTGGAGAGATGGACACCTTCAGCAATGTGATTTCCAACAGTATCCAGTTGCTTGTTCAGGACCTGGACGCTGCCTGTGATCCTGCTCTCACTGCCATGAGCAAGATGCCATGGCAGAGTGTAGAGCATGTAGGTGACCAAAGTCCCTACGTGACGTCAGTCATCATGCACATCAAACAGAACGTCCCCATCATCAGAGGGAACCTGGCCTCCACACGAAAATACTTCACCCAGTTCTGCATCAAGTTCACCAACTCTTTTATTCCTAAATTCATCAACCACTTGTTCAGGTGTAAGCCTATCAGCATGGTGGGGGCTGAACAGCTCCTCCTGGACACCCACTCCCTGAAGACAGTGTTGTTGGATCTGCCCTCTATAGGGTCTCAGGTGGTCCGCAAGGCCCCAGCCAGCTACACCAAGATAGTCGTGAAGGGGATGACCCGCGCTGAGATGATCCTCAAGGTGGTCATGGCCCCCCATGAACCCTCCGTGGTGTTTGTGGATAACTACATCAAGCTCCTCGCTGATGGAAACCCAGAGACCTTCCAGAAAACTCTGGATATGAAGgggttgaAGCGCAGTGAGCAGAGCAGCATGTTGGAACTCTTCAGACAGAGGTTACCCACTCCACCCTCAGGGGCCGATGgaggcccctctctctccttcagcacCCCCACCCCCGAGCAGGAGAACTCGCGCATACGCAAACTGGAGAAGCTCATCAAAAAGAGACTATGAGCGTGCACACACTCATCACCATACCACACACAAATGATTCCAGTAATTCATCTCAAATACTTTTTCTTGCTCTGTTCAAGCATAATGGAGAATTGCAGGCAGAGTAAAGACATGATTGTCTCATTTTTGTTAGGAGCATTAATGACCCTAATGATTTCAAAGTCAACTGTCGAATTATGAAGAAATTTCCTCAGCTGCAGAGCTGTTGGCACGTATTACTCATTTACTTGTGTATTTCTTTTCTGCTTCTCTTTTTATGACACTAAATACCCGAGCTTTGTAAATGTTAAATGTAGACTATATCATACATATGCTATGCATTTTAACAAAATGTGTTTGCACTTAAAGACTGAGCTACTAACTAAAAACGGCTTTAAGAGCAATTTGCTGCCGCTTTGGCACCTATCCTCCCAGTCCCAGACTGAGAACAAGGAACTTCAGTGCGTTTGAAGCTAACGTTATGATATTCTCCAGTCCTGTGCCTTTGTGTGTTTCTCTTGGTTCCCTGTTCAAGGGGAGGATGCAGTTAGTTAGGAGTTTGTATGTTTCCAGTGTCCCTTCACAACAAGAACACCCTCCAGGTGGATGGACCGCATCCCACCATGCATTGATGTCTCCAGGTTCAGTGGTTAAGCCCCCAGGTCCAGGACAGAGGAAATCCCAAGATCCTCTATCTCCTCAATTAGACACGAGACAGTTTCTGTGCTTTTTGAAAATCCCCCATGAAATGAGAACCAGTCAAAGCCTTTTAACTCTGGCCCTTCGCCAGGAATTGTGTATGCGTTTGAGACATTAAGCATGTTCATTTATTTAAGCTCTATTTCCCCATGTAATTCCTTGCTGAGCGTTTTATAAATGTCAATCTGaagtgtatttatgtgtgtgtgtgtgtgtgtgtctgaatcgATTTGATTACAGTGAGGGAGAGTTGCAGTACTTTATAACAGAGGAACTCATGTTCTCTGTTGTACAAGGATGCATTGTACAACATATTGATTTCTGTTTAAGATTTattgtcttttttttattttctgttaTTCCGGGCCTCTGTTTGACATTGACAGGCCTAGATTACCTGTCAATAATAATTCAAACTTACTGACACTCCCATTATGCTTGTTTGCACTGGGTTCGGAACGCAATCATGGTTACATTAAGACACTGTGTAAGATTGAAATACCGCAAGTTTTCCCAGAAAACATCCCTTTACATCctcatgctagctagcagtagCCACTGCGCCCAGTTTGGAATGAcagtgtcagccaatcagctcctTTATTGTTCAACCATGGTGCTTCACGGTGTGTGTAACCATGATTGTGATCCGACCCCAGTACAGCTCAAGCGTAAC

Function

symbol description
vps53 Predicted to be involved in retrograde transport, endosome to Golgi. Predicted to be located in Golgi apparatus and endosome membrane. Predicted to be part of GARP complex. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 2E. Orthologous to human VPS53 (VPS53 subunit of GARP complex).

NR:

description
vacuolar protein sorting-associated protein 53 homolog

GO: NA

KEGG:

id description
K20299 VPS53; vacuolar protein sorting-associated protein 53

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961143.1 True 4204 mRNA 0.48 22 16559760 16591432

Neighbor

gene id symbol gene type direction distance location
LOC110503865 rflnb coding downstream 1078 16555762 ~ 16558682 (-)
abhd15a LOC106612842 coding downstream 44454 16506012 ~ 16515306 (-)
aipl1 LOC106612843 coding downstream 137479 16413685 ~ 16422281 (-)
LOC110503859 LOC106612846 coding downstream 152386 16393276 ~ 16407374 (-)
LOC110503854 LOC106612853 coding downstream 325131 16227571 ~ 16234629 (-)
LOC110503875 LOC106612835 coding upstream 242086 16833518 ~ 16913657 (-)
LOC110503880 LOC106612833 coding upstream 329675 16921107 ~ 16993293 (-)
LOC110503876 LOC106612831 coding upstream 402075 16993507 ~ 17087259 (-)
LOC110503884 psph coding upstream 619534 17210966 ~ 17217503 (-)
LOC110503885 chchd2 coding upstream 648790 17240222 ~ 17244470 (-)
G1908029 NA non-coding downstream 82800 16461420 ~ 16476960 (-)
G1908067 NA non-coding downstream 231621 16327709 ~ 16328139 (-)
G1908004 LOC106612850 non-coding downstream 295007 16262574 ~ 16264753 (-)
G1907962 NA non-coding downstream 374272 16185035 ~ 16185488 (-)
G1907914 NA non-coding downstream 428513 16130812 ~ 16131247 (-)
G1908202 LOC106612839 non-coding upstream 26540 16617972 ~ 16622138 (-)
G1908230 LOC106612838 non-coding upstream 44205 16635637 ~ 16641190 (-)
G1908235 NA non-coding upstream 55903 16647335 ~ 16647565 (-)
G1908269 NA non-coding upstream 123734 16715166 ~ 16721539 (-)
G1908285 NA non-coding upstream 127924 16719356 ~ 16776811 (-)
G1907951 NA other downstream 398534 16158846 ~ 16161226 (-)
G1907922 NA other downstream 427198 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 515455 16036987 ~ 16044740 (-)
G1906218 NA other downstream 1046667 15512359 ~ 15513093 (-)
G1906198 NA other downstream 1059000 15500204 ~ 15500760 (-)
LOC118944080 LOC106612823 other upstream 686375 17277554 ~ 17278524 (-)
LOC110503924 LOC107554284 other upstream 1840592 18432024 ~ 18434798 (-)
LOC110503944 LOC106612932 other upstream 2376630 18968062 ~ 19185772 (-)
G1910398 NA other upstream 2569017 19160449 ~ 19162158 (-)
G1910539 NA other upstream 2741409 19332841 ~ 19333225 (-)

Expression


Co-expression Network