LOC110503884 (psph)


Basic Information

Item Value
gene id LOC110503884
gene name psph
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 17210966 ~ 17217503 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582499.2
TTCGCGCAGCTTTCTCTTCCTCACCAGTGAACCTATTGAATGCATCTGGGAAGTCGGACAATGCTGAAACCGGGGACAGTGCTATATCAACCAAGAACATTTCACACAAAATTGTTTTCTTATTGAATAAATTAGACTTAGCTTGCAGGTCCAGCACATGCCAAAAAATACATGAAGAGTACCATTTAACACCATCAAGGACACTTTGTACAGCATAATGACAACTTTATCACAGACAAAGGAAATCTTCCGGAGAGCAGACGCTGTGTGCTTTGATGTTGACAGCACTATTATCAGAGAAGAAGGCATTGATGAGCTAGCCAAATTCTGCGGGGTTGGAGATGCTGTCACAGAAATGACTCGCAAGGCCATGGGGGGGTCAGTGACTTTTAAAACCGCTCTGACAGAGCGCCTGTCAATCATCCGATGCTCGAGGGAACAAGTGAACAAACTGATAACTGACCACCCTCCCCAGTTGACGACAGGTATTAAGGAGCTTGTTGATACTCTGCACCAGCGCAACGTGAAGGTGTTCCTGGTCACTGGCGGTTTCCGCTGTATCGTGGAGCATGTTGCCACTCAACTCAGCATTCCCCTCCATCACGTGTATGCCAACCGCCTCAAGTTCTACTTCAATGGTGAGTATGCTGGCTTTGACGAGACCCAGCCCACATCTGAGAGTAATGGGAAGGGGAAGGTGATCAGCATGCTCAAGGAGAAGCACGGCTTCAAGAACGTGGTGATGATTGGCGATGGAGCCACAGACCTGGAGGCCTGTCCCCCTGCAAATGCATTCATTGGATTTGGTGGAAATGTGGTCAGGCAGCAAGTAAAGGAGAAAAGTTTGTGGTACGTCACAAGTTTTGGAGAGCTGCTAAAAGAACTGGAGAAGATTTAACAAAGAAATACCCTACAAACCTGAAACCTCTTACAACTAGTGTTACTAATGCTAACATCAGTGTTTTATTTTCACCTAATGGTGTGCCTTTTATGGTTTTATCCAATGCACACTTTTTTTCTTCCAgtcaataataaaaaataaaaaaatgttttaattaaaatgtttctacaacaatagtgtcttcttgggtttgacccTTACATTTTCTACTAGAGAATATAATTCAGGTTAACCAAATGTTATTCTTTTTGGAGGGATtggagtcaattccatttcaattcagcaTTTGTTTAATTCCGGAATAATTGAATTGACCCCAATCCTGGATGTTTTAAACTGCACTTTTGTGGTTTTGTCCTCATTTCAATGCTTTAGTGGTCAGGAAAATATAACTACTGCATTGTACAATATGTGCCATCAAATGTGCATTTATAGATGTTTTAATTTTGCTATTGACACTAATAATAGTAAAAGTGTAAAATGCA

Function

symbol description
psph Predicted to enable magnesium ion binding activity and phosphoserine phosphatase activity. Predicted to be involved in L-serine biosynthetic process and dephosphorylation. Predicted to act upstream of or within cellular amino acid biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in PSPH deficiency. Orthologous to human PSPH (phosphoserine phosphatase).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0006564 L-serine biosynthetic process biological_process
GO:0004647 phosphoserine phosphatase activity molecular_function

KEGG:

id description
K01079 serB, PSPH; phosphoserine phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582499.2 True 1386 mRNA 0.42 6 17210966 17217503

Neighbor

gene id symbol gene type direction distance location
LOC110503876 LOC106612831 coding downstream 123707 16993507 ~ 17087259 (-)
LOC110503880 LOC106612833 coding downstream 217673 16921107 ~ 16993293 (-)
LOC110503875 LOC106612835 coding downstream 297309 16833518 ~ 16913657 (-)
LOC110503864 vps53 coding downstream 619534 16559760 ~ 16591432 (-)
LOC110503865 rflnb coding downstream 652284 16555762 ~ 16558682 (-)
LOC110503885 chchd2 coding upstream 22719 17240222 ~ 17244470 (-)
LOC110503887 LOC106612825 coding upstream 56919 17274422 ~ 17276481 (-)
LOC118944080 LOC106612823 coding upstream 60051 17277554 ~ 17278524 (-)
LOC110503457 LOC106612822 coding upstream 62395 17279898 ~ 17281525 (-)
LOC110503890 LOC106581067 coding upstream 108091 17325594 ~ 17329423 (-)
G1908373 NA non-coding downstream 373855 16836742 ~ 16837111 (-)
G1908301 NA non-coding downstream 414326 16751127 ~ 16796640 (-)
G1908285 NA non-coding downstream 434155 16719356 ~ 16776811 (-)
G1908272 NA non-coding downstream 448925 16758103 ~ 16762041 (-)
G1908551 LOC106612827 non-coding upstream 13389 17230892 ~ 17233704 (-)
G1908604 LOC106612819 non-coding upstream 89078 17306581 ~ 17309103 (-)
G1908606 NA non-coding upstream 92829 17310332 ~ 17314262 (-)
G1908714 NA non-coding upstream 306953 17524456 ~ 17531758 (-)
G1908777 NA non-coding upstream 355343 17572846 ~ 17573066 (-)
G1907951 NA other downstream 1049740 16158846 ~ 16161226 (-)
G1907922 NA other downstream 1078404 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 1166661 16036987 ~ 16044740 (-)
G1906218 NA other downstream 1697873 15512359 ~ 15513093 (-)
G1906198 NA other downstream 1710206 15500204 ~ 15500760 (-)
LOC110503924 LOC107554284 other upstream 1214521 18432024 ~ 18434798 (-)
LOC110503944 LOC106612932 other upstream 1750559 18968062 ~ 19185772 (-)
G1910398 NA other upstream 1942946 19160449 ~ 19162158 (-)
G1910539 NA other upstream 2115338 19332841 ~ 19333225 (-)

Expression


Co-expression Network