Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110503885 |
| gene name | chchd2 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048588.1 |
| NCBI id | CM023242.2 |
| chromosome length | 45930806 |
| location | 17240222 ~ 17244470 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| chchd2 | Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in mitochondrion organization and positive regulation of transcription by RNA polymerase II. Predicted to be active in mitochondrion and nucleus. Human ortholog(s) of this gene implicated in Parkinson's disease 22. Orthologous to human CHCHD2 (coiled-coil-helix-coiled-coil-helix domain containing 2). |
| description |
|---|
| coiled-coil-helix-coiled-coil-helix domain-containing protein 2-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021582501.2 | True | 1429 | mRNA | 0.48 | 4 | 17240222 | 17244470 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110503884 | psph | coding | downstream | 22719 | 17210966 ~ 17217503 (-) |
| LOC110503876 | LOC106612831 | coding | downstream | 152963 | 16993507 ~ 17087259 (-) |
| LOC110503880 | LOC106612833 | coding | downstream | 246929 | 16921107 ~ 16993293 (-) |
| LOC110503875 | LOC106612835 | coding | downstream | 326565 | 16833518 ~ 16913657 (-) |
| LOC110503864 | vps53 | coding | downstream | 648790 | 16559760 ~ 16591432 (-) |
| LOC110503887 | LOC106612825 | coding | upstream | 29952 | 17274422 ~ 17276481 (-) |
| LOC118944080 | LOC106612823 | coding | upstream | 33084 | 17277554 ~ 17278524 (-) |
| LOC110503457 | LOC106612822 | coding | upstream | 35428 | 17279898 ~ 17281525 (-) |
| LOC110503890 | LOC106581067 | coding | upstream | 81124 | 17325594 ~ 17329423 (-) |
| LOC110503892 | LOC106612816 | coding | upstream | 288651 | 17533121 ~ 17549493 (-) |
| G1908551 | LOC106612827 | non-coding | downstream | 6518 | 17230892 ~ 17233704 (-) |
| G1908373 | NA | non-coding | downstream | 403111 | 16836742 ~ 16837111 (-) |
| G1908301 | NA | non-coding | downstream | 443582 | 16751127 ~ 16796640 (-) |
| G1908285 | NA | non-coding | downstream | 463411 | 16719356 ~ 16776811 (-) |
| G1908604 | LOC106612819 | non-coding | upstream | 62111 | 17306581 ~ 17309103 (-) |
| G1908606 | NA | non-coding | upstream | 65862 | 17310332 ~ 17314262 (-) |
| G1908714 | NA | non-coding | upstream | 279986 | 17524456 ~ 17531758 (-) |
| G1908777 | NA | non-coding | upstream | 328376 | 17572846 ~ 17573066 (-) |
| G1908789 | NA | non-coding | upstream | 337335 | 17581805 ~ 17582118 (-) |
| G1907951 | NA | other | downstream | 1078996 | 16158846 ~ 16161226 (-) |
| G1907922 | NA | other | downstream | 1107660 | 16131990 ~ 16132562 (-) |
| LOC110503846 | NA | other | downstream | 1195917 | 16036987 ~ 16044740 (-) |
| G1906218 | NA | other | downstream | 1727129 | 15512359 ~ 15513093 (-) |
| G1906198 | NA | other | downstream | 1739462 | 15500204 ~ 15500760 (-) |
| LOC110503924 | LOC107554284 | other | upstream | 1187554 | 18432024 ~ 18434798 (-) |
| LOC110503944 | LOC106612932 | other | upstream | 1723592 | 18968062 ~ 19185772 (-) |
| G1910398 | NA | other | upstream | 1915979 | 19160449 ~ 19162158 (-) |
| G1910539 | NA | other | upstream | 2088371 | 19332841 ~ 19333225 (-) |
