LOC118944080 (LOC106612823)


Basic Information

Item Value
gene id LOC118944080
gene name LOC106612823
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 17277554 ~ 17278524 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118944080
aagaaagaaaagaaaaaacatttgaaaacCTCCTTGGCCAATGCCCATGAGACTCTACCTTCTGTTGGTGGAGTGCTATAAAGATAGCTCTGAGTATACAGACGGTGAGAATTCCAAAGCAGAACCCAGACAGTGAAACCCTTTTGTGTGTGAAGTTGAGACAGTTAAGAGAGTGAAGACACATGTAGACTTACTTACAAAGGAAGGTAAAACAACAAATGGCTGTGTTGGGACTAGAGATCTTGGGAGTGATCCTGGCTGTCCTGGGTTGGATATTAAGCATCGTGTCCTGCGCCATGCCCATGTGGAGTGTGTCCGCTTTCATCGGGGTCAACATCATCACAGCTCAGACCATGTGGGAGGGCATCTGGATGACCTGTATGGTGCAGAACACGGGCCAAATGCAGTGTAAGGTCTACGACTCCATGCTAGCCCTCAGCTCTGACCTGCAGGCAGCCCGAGCCCTCACAATCATCTCTATAGTTGTGGGCATCATGGGGGTGCTGGTGGCCGTGGTGGGGGCTAAGTGTACCAACTGTGTTGAGGACGAGACGGCCAAGGCCCAGGTGATGATCGCAGCCGGGGTGGCCTTCATCGTAGCATCCCTGACTCAGCTGATCCCTGTGTCCTGGTCAGCCAACAGAATCATCATGGATTTCTATAGTCCCATCACTCCTGAGGCTCAGAAACGGAGATTGGAGGGGCTCTCTACCTGGGCTGGGCAGCAGCCGCATTACTCctcatcgggggggggggggggggggggggggggtcctgtgcTGTAGTTGCCCCCCACAGCCTGAGAAGAGGTATGCAGGGCCACCCTCACGGATGGTGTACTCCCCAATCAGGTCTGTGGCCCCCAGCGGCTATGACAAAAGAGACTATGTTTGAACTGACCTGCGTAGCTGGTAGTAAAGTGTGTCAATTTCACAATAAAAACTGTTTCATAATACCTGCATTTTTTCTTA
>TU2182802
CAAAGCAGAACCCAGACAGTGAAACCCTTTTGTGTGTGAAGTTGAGACAGTTAAGAGAGTGAAGACACATGTAGACTTACTTACAAAGGAAGGTAAAACAACAAATGGCTGTGTTGGGACTAGAGATCTTGGGAGTGATCCTGGCTGTCCTGGGTTGGATATTAAGCATCGTGTCCTGCGCCATGCCCATGTGGAGTGTGTCCGCTTTCATCGGGGTCAACATCATCACAGCTCAGACCATGTGGGAGGGCATCTGGATGACCTGTATGGTGCAGAACACGGGCCAAATGCAGTGTAAGGTCTACGACTCCATGCTAGCCCTCAGCTCTGACCTGCAGGCAGCCCGAGCCCTCACAATCATCTCTATAGTTGTGGGCATCATGGGGGTGCTGGTGGCCGTGGTGGGGGCTAAGTGTACCAACTGTGTTGAGGACGAGACGGCCAAGGCCCAGGTGATGATCGCAGCCGGGGTGGCCTTCAACAGAATCATCATGGATTTCTATAGTCCCATCACTCCTGAGGCTCAGAAACGGAGATTGGAGGGGCTCTCTACCTGGGC

Function

NR:

description
PREDICTED: claudin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118944080 False 971 mRNA 0.53 1 17277554 17278524
TU2182802 True 559 TUCP 0.53 2 17277807 17278410

Neighbor

gene id symbol gene type direction distance location
LOC110503887 LOC106612825 coding downstream 1073 17274422 ~ 17276481 (-)
LOC110503885 chchd2 coding downstream 33084 17240222 ~ 17244470 (-)
LOC110503884 psph coding downstream 60051 17210966 ~ 17217503 (-)
LOC110503876 LOC106612831 coding downstream 190295 16993507 ~ 17087259 (-)
LOC110503880 LOC106612833 coding downstream 284261 16921107 ~ 16993293 (-)
LOC110503457 LOC106612822 coding upstream 1374 17279898 ~ 17281525 (-)
LOC110503890 LOC106581067 coding upstream 47070 17325594 ~ 17329423 (-)
LOC110503892 LOC106612816 coding upstream 254597 17533121 ~ 17549493 (-)
LOC110503896 LOC106612812 coding upstream 361854 17640378 ~ 17658271 (-)
itgae.2 itgae coding upstream 379934 17658458 ~ 17671274 (-)
G1908551 LOC106612827 non-coding downstream 43850 17230892 ~ 17233704 (-)
G1908373 NA non-coding downstream 440443 16836742 ~ 16837111 (-)
G1908301 NA non-coding downstream 480914 16751127 ~ 16796640 (-)
G1908604 LOC106612819 non-coding upstream 28057 17306581 ~ 17309103 (-)
G1908606 NA non-coding upstream 31808 17310332 ~ 17314262 (-)
G1908714 NA non-coding upstream 245932 17524456 ~ 17531758 (-)
G1908777 NA non-coding upstream 294322 17572846 ~ 17573066 (-)
G1908789 NA non-coding upstream 303281 17581805 ~ 17582118 (-)
G1907951 NA other downstream 1116328 16158846 ~ 16161226 (-)
G1907922 NA other downstream 1144992 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 1233249 16036987 ~ 16044740 (-)
G1906218 NA other downstream 1764461 15512359 ~ 15513093 (-)
G1906198 NA other downstream 1776794 15500204 ~ 15500760 (-)
LOC110503924 LOC107554284 other upstream 1153500 18432024 ~ 18434798 (-)
LOC110503944 LOC106612932 other upstream 1689538 18968062 ~ 19185772 (-)
G1910398 NA other upstream 1881925 19160449 ~ 19162158 (-)
G1910539 NA other upstream 2054317 19332841 ~ 19333225 (-)
G1910651 NA other upstream 2212193 19490717 ~ 19491608 (-)
G1908285 NA non-coding downstream 500996 16719356 ~ 16776811 (-)

Expression


Co-expression Network