LOC110503890 (LOC106581067)


Basic Information

Item Value
gene id LOC110503890
gene name LOC106581067
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 17325594 ~ 17329423 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582507.2
gagtagggtgctGTATTTTTTGTGAGGGTAaagttagatggtagggtatttgtttatttatttttcaagtgAAGTATAAGGCAGTTGTACTCCAGTGTAGTAGGTGACGGCAATGCAACATAttaaacctcatcgaagaagATCAACAAAAAGTCGGAACCTTTGTACCTAGTATGCGTTTCAGTCCGGCAGAATTGATGTGAAACTCATAGCACACCAACGCCGCAATAAATTTATCGTTTTACTGACAGATTACTCTGTTTTGTAAAGCAGAAATATGTCTATATTTACACCAACAAACCAGATCCGACTCACAAATGTGGCGGTGGTGAGGATGAAAAAGGGAGGAAAACGATTTGAAATCGCCTGCTACAAAAATAAAGTGATGAGCTGGAGATCTGGAGCAGAGAAGGACCTGGATGAAGTGTTGCAGACCAGTTCTGTTTTCAATAATGTTTCCAAGGGTCAGGTTGCCAAGAAAGATGATCTGTCAAAAGCCTTTGGAACAGATGACCTGACAGAGATATGCAAAGAAATTTTAGCTAAAGGAGAACTCCAGGTTTCAGATAAGGAGAGGCAGAGCCAGTTAGAGACGAGTTTCAGAGACATTGCAACCATCGTGGCGGAGAAGTGTGTGAACTTAGAGACCAAGCGACCATACACTGTCAACCTCATAGAGCGGGCCATGAAGGATATCCACTACTCTGTCAAGGCCAACAAGAGCACCAAGCAGCAGGCTCTGGAGGTGATCAGGCAGCTGAAGGATTCCATAGAGATCCAGAGGGCCCACATGAGGCTGAGGCTGGTGCTGCCGGCCAAGGAGGGCAAGAGGCTGAAGGAGAAACTCAAACCCCTCCTCAAGGTGGTGGAAAGTGAAGACTTTGACGACCAGCTagagatggtATGTCTGGTGGACCCAGGCTGCTTCAGGGAGATAGATGAGTTGATCCGCTGTGAGACGAAAGGTAAAGGTTCCCTGGAGGTGCTCAGTCTGAAGGATGTGGAAGAGGGAGACGAGAGGCTGGAATAACCTTCACACAGAGCACTATAGGACTACATACATACACTATCTTACCACCACCGTTGCCACACAAACTGCAAACCCTTCATTAAAGAGACCGCTATTTCTAATACCAATGGATCCCTTTCCAGCCTCTGTTTATTTGAAGATAATTATTTAactgaacagaatacattttTTCCTGCTCTACGTACAACTACTGGATGTATAGTCTCTCGTGACTGCTGATTTGCTTCTTGGTCTCGATTGCTGGATGTATGACCTCTTGTAAGTTGCATGATGCTTTAGCTGGAGGTTGATGGAAACCTGAACTCAAACATTGAGATGCTCTGTATTTCTTTAGTTTACAAAACAAGTTTGAGGCTTGTCAGGTATTGACCAGTTTTTCACTACATATTATGAGTTTTGGCAAACACTGACGAGTCATTTTCAATCATTATATTGACCCATGCAACATCAAACGCAGCTTGTGCAAGTTAATAAACACGTAATCAGATGGTTAACGTCTACAACATCAGAGGATTGATTACCTAGCAAGCCATCAAGGCAAGGTAAAATATCACAAATGGAGCTAGATTAAGCCAGAAGAATAATATACTTGTTGAACATAGCTATAGCCATCAGTCTTGTGTTTTTTCATGGTCATCACTCACTGCTAAGTTTGTCAAGGCCCTGACATCAGTGTATAGCTAGCTATCTTGCCAGGGCTTTTTGCTGCGATCAGGTGCGTGCACCACTTGAATGTGACCTTTGCTTATGAACAAAAAATGGCTCTATATAATTGAATTAAGTTATTTTTGTGAGTCAACTTCTACTCAAGTAATTAATATGGTTTTGACCCTGCCTTTCATTTTACCCAGTGTGGCATTTCACCATACTTATGAAGTCATATTTTACTATTACTAGTTAAAAATAATAACCCCTTAATTTATATATTCTTTCACAAGTCTTTCCTTATAAACAAttgcaaataaaaatgtaataatttCA
>XM_021582508.2
CAAGGGGGAGAAATCCTGAGAGGAGTGTTGTGAGTAGTAGACATGTACCAGTAGAGAGGGATAGGTCAACAAGTGATATGTTTCAGTAAAATTAGATGtttagcatttatagcaatgttaatcaactgtactgcagggagaGAACGTAAGTCTCAGAAAATTGAAgctgtggtggcagctgcagagaagtatttgattgtgcgagacttgacatcagaagagttacaggatgTGTTAAGTGGTGATGTCCTATCCTTTCCGGTTGTTGGCATGAGAGAGAAGGACCTGGATGAAGTGTTGCAGACCAGTTCTGTTTTCAATAATGTTTCCAAGGGTCAGGTTGCCAAGAAAGATGATCTGTCAAAAGCCTTTGGAACAGATGACCTGACAGAGATATGCAAAGAAATTTTAGCTAAAGGAGAACTCCAGGTTTCAGATAAGGAGAGGCAGAGCCAGTTAGAGACGAGTTTCAGAGACATTGCAACCATCGTGGCGGAGAAGTGTGTGAACTTAGAGACCAAGCGACCATACACTGTCAACCTCATAGAGCGGGCCATGAAGGATATCCACTACTCTGTCAAGGCCAACAAGAGCACCAAGCAGCAGGCTCTGGAGGTGATCAGGCAGCTGAAGGATTCCATAGAGATCCAGAGGGCCCACATGAGGCTGAGGCTGGTGCTGCCGGCCAAGGAGGGCAAGAGGCTGAAGGAGAAACTCAAACCCCTCCTCAAGGTGGTGGAAAGTGAAGACTTTGACGACCAGCTagagatggtATGTCTGGTGGACCCAGGCTGCTTCAGGGAGATAGATGAGTTGATCCGCTGTGAGACGAAAGGTAAAGGTTCCCTGGAGGTGCTCAGTCTGAAGGATGTGGAAGAGGGAGACGAGAGGCTGGAATAACCTTCACACAGAGCACTATAGGACTACATACATACACTATCTTACCACCACCGTTGCCACACAAACTGCAAACCCTTCATTAAAGAGACCGCTATTTCTAATACCAATGGATCCCTTTCCAGCCTCTGTTTATTTGAAGATAATTATTTAactgaacagaatacattttTTCCTGCTCTACGTACAACTACTGGATGTATAGTCTCTCGTGACTGCTGATTTGCTTCTTGGTCTCGATTGCTGGATGTATGACCTCTTGTAAGTTGCATGATGCTTTAGCTGGAGGTTGATGGAAACCTGAACTCAAACATTGAGATGCTCTGTATTTCTTTAGTTTACAAAACAAGTTTGAGGCTTGTCAGGTATTGACCAGTTTTTCACTACATATTATGAGTTTTGGCAAACACTGACGAGTCATTTTCAATCATTATATTGACCCATGCAACATCAAACGCAGCTTGTGCAAGTTAATAAACACGTAATCAGATGGTTAACGTCTACAACATCAGAGGATTGATTACCTAGCAAGCCATCAAGGCAAGGTAAAATATCACAAATGGAGCTAGATTAAGCCAGAAGAATAATATACTTGTTGAACATAGCTATAGCCATCAGTCTTGTGTTTTTTCATGGTCATCACTCACTGCTAAGTTTGTCAAGGCCCTGACATCAGTGTATAGCTAGCTATCTTGCCAGGGCTTTTTGCTGCGATCAGGTGCGTGCACCACTTGAATGTGACCTTTGCTTATGAACAAAAAATGGCTCTATATAATTGAATTAAGTTATTTTTGTGAGTCAACTTCTACTCAAGTAATTAATATGGTTTTGACCCTGCCTTTCATTTTACCCAGTGTGGCATTTCACCATACTTATGAAGTCATATTTTACTATTACTAGTTAAAAATAATAACCCCTTAATTTATATATTCTTTCACAAGTCTTTCCTTATAAACAAttgcaaataaaaatgtaataatttCA

Function

NR:

description
ribosome maturation protein SBDS-like isoform X2

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process

KEGG:

id description
K14574 SDO1, SBDS; ribosome maturation protein SDO1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582507.2 False 2011 mRNA 0.41 5 17325594 17329122
XM_021582508.2 True 1881 mRNA 0.42 5 17325594 17329423
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Neighbor

gene id symbol gene type direction distance location
LOC110503457 LOC106612822 coding downstream 44069 17279898 ~ 17281525 (-)
LOC118944080 LOC106612823 coding downstream 47070 17277554 ~ 17278524 (-)
LOC110503887 LOC106612825 coding downstream 49113 17274422 ~ 17276481 (-)
LOC110503885 chchd2 coding downstream 81124 17240222 ~ 17244470 (-)
LOC110503884 psph coding downstream 108091 17210966 ~ 17217503 (-)
LOC110503892 LOC106612816 coding upstream 203698 17533121 ~ 17549493 (-)
LOC110503896 LOC106612812 coding upstream 310955 17640378 ~ 17658271 (-)
itgae.2 itgae coding upstream 329035 17658458 ~ 17671274 (-)
LOC110503899 LOC106612809 coding upstream 370882 17700305 ~ 17716362 (-)
LOC110503901 LOC106612808 coding upstream 409765 17739188 ~ 17814508 (-)
G1908606 NA non-coding downstream 11332 17310332 ~ 17314262 (-)
G1908604 LOC106612819 non-coding downstream 16491 17306581 ~ 17309103 (-)
G1908551 LOC106612827 non-coding downstream 91890 17230892 ~ 17233704 (-)
LOC110503876 LOC106612831 non-coding downstream 328109 16993507 ~ 17087259 (-)
G1908373 NA non-coding downstream 488483 16836742 ~ 16837111 (-)
G1908714 NA non-coding upstream 195033 17524456 ~ 17531758 (-)
G1908777 NA non-coding upstream 243423 17572846 ~ 17573066 (-)
G1908789 NA non-coding upstream 252382 17581805 ~ 17582118 (-)
G1908791 NA non-coding upstream 254331 17583754 ~ 17584118 (-)
G1908792 NA non-coding upstream 255101 17584524 ~ 17584789 (-)
G1907951 NA other downstream 1164368 16158846 ~ 16161226 (-)
G1907922 NA other downstream 1193032 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 1281289 16036987 ~ 16044740 (-)
G1906218 NA other downstream 1812501 15512359 ~ 15513093 (-)
LOC110503924 LOC107554284 other upstream 1102601 18432024 ~ 18434798 (-)
LOC110503944 LOC106612932 other upstream 1638639 18968062 ~ 19185772 (-)
G1910398 NA other upstream 1831026 19160449 ~ 19162158 (-)
G1910539 NA other upstream 2003418 19332841 ~ 19333225 (-)
G1910651 NA other upstream 2161294 19490717 ~ 19491608 (-)

Expression

LOC110503890(LOC106581067) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 25.
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LOC110503890(LOC106581067) Expression in each Bioproject

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LOC110503890(LOC106581067) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network