LOC110503892 (LOC106612816)


Basic Information

Item Value
gene id LOC110503892
gene name LOC106612816
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 17533121 ~ 17549493 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582513.2
AGGAGCTCCATTCCCTGTTTTCCTGCGTGCCATTATTAAGCGCTATCTAGCTAGCACATTGGAATAATTCGGAAAAATTAGATAACACGACAAAATAAGAAAACGGCGAGAATACGGGtataggttaaaaaaaaaaaatttaaaaaacgttTTGCATTACTTTGAATAGTCCGAATGTGAGACGACACCTCGCTTGGAATGATTTCATCCGCATTTATGTTCTGCATTTGAGATTTCTTTCATCCGCGCAGCTGCATTATGCGGACGGTTATATTTtaggctggctggctgtgtagCAGTCTATTCGTGCAATGCACCGCTCAAAACGTCTCACAATTATTTTTCCTACACGTGGAGGATCAGAGCCGCACAGAGAATGCTTAAACATGGGATAGGCGTTTTATGTGGTCAGTATTTATCTGCTATGATTTTGAAGATCCGaggtcagagacagacagcggCTGTCCTCAAACGCGTCATAGCCCACTTCTGCTGGAtgcaaagaaagaaagacagacttGAGATAGCCTTCTGACTCTTTAAATATTTAAGAAAACGGACTCTTCAAAACTGAAGATATGCTAGTCTCTGTCTAACATCGTCTACGCTTGATCTTCTAACAATACATTTTAAACAGAGAAGTCACGTATGAGAGAGCCCATGACCAGGCTCCAAAATTACCCCGAACTAGGACGCAGCCTAAAAATTGATCCAATGCGAAATGCACCAGCTTCTCCAGTTGGAATGTCGCCTACGGTATATACATACAAAAAAATACCTTCATCAACACACATTTACATTGAACCTTATTGCACATCGCAACAAGGAGGACTCCTGAATTTGTCCTGAATCGTTCCAAAAATACTGCAATTTAGATCCCGGACATCAACAACTTTAATGGCTTTTGTGTTAAGAAGATGGAGAGTGTTATTGGTGCTGAACGTGGTTGCGGTTGCGGGGTTCATGACACTTTGGACCAAGTGCACCCACACCCGAGTAGCAAAAACCATCGGTCAGGAAGATGTGAAAAGACAATCACGATCTAACGGCACTGCTCAAGGTTTGAGCATCAGTCATGAAGTATTGCTAAAGAGGCTCGGGTCGTTGGAGGACGTGGTTTACAGACAGCTTAATGGTCTGTCCAAGTCCCTGGGGCTGATCGAGGGTTTTGGGGGGCGAGGTAAAGGGGGGTTCCCCGCCACCCTAGCCTCAAAAGAAGAGGCTGATGCCAAAGTACTGAGGGAGAAATATGGATACAATGCTTACCTCAGCCAAAAGATATCACTGGACCGGTCCATACCAGACTTCCGGCCTAGCAAGTGTAAAAAGGCCAGCTTCCCCAGGGATCTTCCAAACATCTCCCTTATCTTCATCTTTGTCAATGAGGCGTTGTCAGTAATCCTCCGCTCCGTCCACTCAGCTGTCAATCACACACCGGCTCACCTCCTCAAAGAGATCATCTTGGTGGACGACTACAGCGATGACGAACAACTGAAAGGGCCGTTGGAGGATTATGTAAACAAGCGTTACCCAGGTATGGTGAAAATCGTGAGGAACCAGAAGCGAGAGGGACTGATCCGTGCCCGCATCGAGGGCTGGAAGGCAGCCAGTAGCGAGGTGACGGGTTTCTTCGATGCCCACGTTGAGTTCACACCCTCCTGGGCTGAGCCGGTTCTGATCAGAATCAAAGAGGACCACAAGAGGATCATCCTGCCCTCCATCGATAACATCAAGCACGAGACTTTTGAGCTGGAGCGCTACGAGAACTCTGGCCATGGCTACAATTGGGAGCTGTGGTGCATGTACATCAACCCCCCCAAACAGTGGTGGGATGACGGGGACACCTCCGCACCCATTAGAACTCCTGCAATGATTGGTTGCTCCTTTGTGGTCAACCGCGAGTACTTTGGGCACCTGGGGCTGCTGGACTCTGGCATGGACGTCTACGGAGGAGAGAACATTGAACTGGGGATCAAGGTGTGGCTGTGTGGGGGCAGTATGGAGGTGCTGCCCTGCTCCAGAGTGGCTCACATCGCCAGGATGAAGAAGCCCTACCACAGCAACATAGCTTCCAGCACGCGGCGTAATGCCCTGCGTGTGGCCGAGGTCTGGATGGACCAGTATAAGTCCCAAGTCTACCTGGCCTGGAACATTCCAATGGAGAACCATGGGATAGACTATGGGGACATTTCTCAGAGGGTAGCCTTGAGGAAGTCTCTGCATTGTAAGAACTTTGAGTGGTACCTGGACAACGTCTATCCAGAGATGAGGAGGTACAACAACACTCTCTTTTATGGGGAGatTCGTAGTAGCAAAGCGACCCATCTGTGTATGGACCAGGGAGAGAAGGTAAACCACACGGCCACCCTGCACCCCTGTCACGGAATGGGACCTCAGTTGGGTCGGTACACCAAGGAGGGCCATTTTTTCCTCGGCGCTCTGGGCAGTACAGGGGACGAAACACGCTGTCTGATGGACGACCAGGTCTCCAATTTCCCTCAGCTCCTCAACTGTGACAAAGTCTCCAACACCAGGCTGACCACATGGCACTTCTCTCAGAACGAGTCGATCATCAACAGAGCCACGGGTCGCTGTCTGGAGGTGATACAGGCTAACGTTTACTTCGGACACTCGCTGGTGCTTCAGACCTGCTCCGGACAGAGGTGGAACATCAAAAACACAATGAAGCAGTAGCCACAGCATGATGCAGAATTCTTCTTTGGCCAAGATAGTGTTATTGTACTGAATTGTATCAGATGTCATACTGTATTATTACAATTATTCACTTGGTGTTAACAGTTGGACTTTTCCAAGATTGTCTTCCAATAAACTGCTGGTCTGatggta
>XM_021582511.2
TAGGAGCTCCATTCCCTGTTTTCCTGCGTGCCATTATTAAGCGCTATCTAGCTAGCACATTGGAATAATTCGGAAAAATTAGATAACACGACAAAATAAGAAAACGGCGAGAATACGGGtataggttaaaaaaaaaaaatttaaaaaacgttTTGCATTACTTTGAATAGTCCGAATGTGAGACGACACCTCGCTTGGAATGATTTCATCCGCATTTATGTTCTGCATTTGAGATTTCTTTCATCCGCGCAGCTGCATTATGCGGACGGTTATATTTtaggctggctggctgtgtagCAGTCTATTCGTGCAATGCACCGCTCAAAACGTCTCACAATTATTTTTCCTACACGTGGAGGATCAGAGCCGCACAGAGAATGCTTAAACATGGGATAGGCGTTTTATGTGGTCAGTATTTATCTGCTATGATTTTGAAGATCCGaggtcagagacagacagcggCTGTCCTCAAACGCGTCATAGCCCACTTCTGCTGGAtgcaaagaaagaaagacagacttGAGATAGCCTTCTGACTCTTTAAATATTTAAGAAAACGGACTCTTCAAAACTGAAGATATGCTAGTCTCTGTCTAACATCGTCTACGCTTGATCTTCTAACAATACATTTTAAACAGAGAAGTCACGTATGAGAGAGCCCATGACCAGGCTCCAAAATTACCCCGAACTAGGACGCAGCCTAAAAATTGATCCAATGCGAAATGCACCAGCTTCTCCAGTTGGAATGTCGCCTACGGTATATACATACAAAAAAATACCTTCATCAACACACATTTACATTGAACCTTATTGCACATCGCAACAAGGAGGACTCCTGAATTTGTCCTGAATCGTTCCAAAAATACTGCAATTTAGATCCCGGACATCAACAACTTTAATGGCTTTTGTGTTAAGAAGATGGAGAGTGTTATTGGTGCTGAACGTGGTTGCGGTTGCGGGGTTCATGACACTTTGGACCAAGTGCACCCACACCCGAGTAGCAAAAACCATCGGTCAGGAAGATGTGAAAAGACAATCACGATCTAACGGCACTGCTCAAGGTTTGAGCATCAGTCATGAAGTATTGCTAAAGAGGCTCGGGTCGTTGGAGGACGTGGTTTACAGACAGCTTAATGGTCTGTCCAAGTCCCTGGGGCTGATCGAGGGTTTTGGGGGGCGAGGTAAAGGGGGGTTCCCCGCCACCCTAGCCTCAAAAGAAGAGGCTGATGCCAAAGTACTGAGGGAGAAATATGGATACAATGCTTACCTCAGCCAAAAGATATCACTGGACCGGTCCATACCAGACTTCCGGCCTAGCAAGTGTAAAAAGGCCAGCTTCCCCAGGGATCTTCCAAACATCTCCCTTATCTTCATCTTTGTCAATGAGGCGTTGTCAGTAATCCTCCGCTCCGTCCACTCAGCTGTCAATCACACACCGGCTCACCTCCTCAAAGAGATCATCTTGGTGGACGACTACAGCGATGACGTTATATTTGGTTGTGTCCCAGAACAACTGAAAGGGCCGTTGGAGGATTATGTAAACAAGCGTTACCCAGGTATGGTGAAAATCGTGAGGAACCAGAAGCGAGAGGGACTGATCCGTGCCCGCATCGAGGGCTGGAAGGCAGCCAGTAGCGAGGTGACGGGTTTCTTCGATGCCCACGTTGAGTTCACACCCTCCTGGGCTGAGCCGGTTCTGATCAGAATCAAAGAGGACCACAAGAGGATCATCCTGCCCTCCATCGATAACATCAAGCACGAGACTTTTGAGCTGGAGCGCTACGAGAACTCTGGCCATGGCTACAATTGGGAGCTGTGGTGCATGTACATCAACCCCCCCAAACAGTGGTGGGATGACGGGGACACCTCCGCACCCATTAGAACTCCTGCAATGATTGGTTGCTCCTTTGTGGTCAACCGCGAGTACTTTGGGCACCTGGGGCTGCTGGACTCTGGCATGGACGTCTACGGAGGAGAGAACATTGAACTGGGGATCAAGGTGTGGCTGTGTGGGGGCAGTATGGAGGTGCTGCCCTGCTCCAGAGTGGCTCACATCGCCAGGATGAAGAAGCCCTACCACAGCAACATAGCTTCCAGCACGCGGCGTAATGCCCTGCGTGTGGCCGAGGTCTGGATGGACCAGTATAAGTCCCAAGTCTACCTGGCCTGGAACATTCCAATGGAGAACCATGGGATAGACTATGGGGACATTTCTCAGAGGGTAGCCTTGAGGAAGTCTCTGCATTGTAAGAACTTTGAGTGGTACCTGGACAACGTCTATCCAGAGATGAGGAGGTACAACAACACTCTCTTTTATGGGGAGatTCGTAGTAGCAAAGCGACCCATCTGTGTATGGACCAGGGAGAGAAGGTAAACCACACGGCCACCCTGCACCCCTGTCACGGAATGGGACCTCAGTTGGGTCGGTACACCAAGGAGGGCCATTTTTTCCTCGGCGCTCTGGGCAGTACAGGGGACGAAACACGCTGTCTGATGGACGACCAGGTCTCCAATTTCCCTCAGCTCCTCAACTGTGACAAAGTCTCCAACACCAGGCTGACCACATGGCACTTCTCTCAGAACGAGTCGATCATCAACAGAGCCACGGGTCGCTGTCTGGAGGTGATACAGGCTAACGTTTACTTCGGACACTCGCTGGTGCTTCAGACCTGCTCCGGACAGAGGTGGAACATCAAAAACACAATGAAGCAGTAGCCACAGCATGATGCAGAATTCTTCTTTGGCCAAGATAGTGTTATTGTACTGAATTGTATCAGATGTCATACTGTATTATTACAATTATTCACTTGGTGTTAACAGTTGGACTTTTCCAAGATTGTCTTCCAATAAACTGCTGGTCTGatggta

Function

NR:

description
putative polypeptide N-acetylgalactosaminyltransferase-like protein 3 isoform X1

GO: NA

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582513.2 False 2847 mRNA 0.48 12 17533121 17549492
XM_021582511.2 True 2869 mRNA 0.48 12 17533121 17549493

Neighbor

gene id symbol gene type direction distance location
LOC110503890 LOC106581067 coding downstream 203698 17325594 ~ 17329423 (-)
LOC110503457 LOC106612822 coding downstream 251596 17279898 ~ 17281525 (-)
LOC118944080 LOC106612823 coding downstream 254597 17277554 ~ 17278524 (-)
LOC110503887 LOC106612825 coding downstream 256640 17274422 ~ 17276481 (-)
LOC110503885 chchd2 coding downstream 288651 17240222 ~ 17244470 (-)
LOC110503896 LOC106612812 coding upstream 90885 17640378 ~ 17658271 (-)
itgae.2 itgae coding upstream 108965 17658458 ~ 17671274 (-)
LOC110503899 LOC106612809 coding upstream 150812 17700305 ~ 17716362 (-)
LOC110503901 LOC106612808 coding upstream 189695 17739188 ~ 17814508 (-)
LOC110503902 LOC106612804 coding upstream 276699 17826192 ~ 17831204 (-)
G1908714 NA non-coding downstream 1363 17524456 ~ 17531758 (-)
G1908606 NA non-coding downstream 218859 17310332 ~ 17314262 (-)
G1908604 LOC106612819 non-coding downstream 224018 17306581 ~ 17309103 (-)
G1908551 LOC106612827 non-coding downstream 299417 17230892 ~ 17233704 (-)
LOC110503876 LOC106612831 non-coding downstream 535636 16993507 ~ 17087259 (-)
G1908777 NA non-coding upstream 23353 17572846 ~ 17573066 (-)
G1908789 NA non-coding upstream 32312 17581805 ~ 17582118 (-)
G1908791 NA non-coding upstream 34261 17583754 ~ 17584118 (-)
G1908792 NA non-coding upstream 35031 17584524 ~ 17584789 (-)
G1908803 NA non-coding upstream 65764 17615257 ~ 17615495 (-)
G1907951 NA other downstream 1371895 16158846 ~ 16161226 (-)
G1907922 NA other downstream 1400559 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 1488816 16036987 ~ 16044740 (-)
G1906218 NA other downstream 2020028 15512359 ~ 15513093 (-)
LOC110503924 LOC107554284 other upstream 882531 18432024 ~ 18434798 (-)
LOC110503944 LOC106612932 other upstream 1418569 18968062 ~ 19185772 (-)
G1910398 NA other upstream 1610956 19160449 ~ 19162158 (-)
G1910539 NA other upstream 1783348 19332841 ~ 19333225 (-)
G1910651 NA other upstream 1941224 19490717 ~ 19491608 (-)

Expression


Co-expression Network