itgae.2 (itgae)


Basic Information

Item Value
gene id itgae.2
gene name itgae
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 17658458 ~ 17671274 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582517.2
CATCACCTCATAGCATTGAGCACACCAGAATAACTTTTTTCATGTGCAGTGTACGGAAGAGCATTTATCAGAAGTtataaaaaaaacttttgatAGGTTATAAGCAAGTTACGATCAGACTGATTTGGTTTAAGCAGTTTATTTTTCTCAGACCTAACATGTTCCACTAGAAACATGATTCGAGGACACATTTTGCTAACTGTGATATGCACAGTAGCAGGcttcaacattttcacaaaaccAGTAAAGCATTTTCCGAACGATGATAAACTATTTGGGCAAACTACTGTTCAGTCTAAAGCTGGGGTATTGGTTACATCACCAAATTCTAGACCCCAGAAAGTATTCAGCTGTGGTCTGGAAAAATGCACAGAACTCAATATCTCAGACAATGCAGGTAAAGGACTCCGACCCATCGTGGCATTGACCAACAGTTTGACTGGGGAGAAGGAGCGGCACATGGTCTGCCAACAGGTCAGGAAGAAGAAGAACACGAATGAGGATCTTAATGCAAACTGTACACTCCTGTCTGGCCTTCTGAAGCATAAGTTGTATTATCCTGCCACGCTAGTTGTAGATCAACTGGAAAGAAACATCTccatcaataacaacaacaacaacaacaacaacaacaacaacaacaacaacaacagtgatgaGCATGATGAGAAGGATGATCCTGGGACTGAGATTGCATTTGTACTTGATGGATCTGGTAGCATTGAAAGCGAAGACTTTAAAAGGGCAAAAGATTTCATCACAACTGTGATGAAAAATGTTTGGGAGAAGTGTTTCAATTGCGAATTTGCTGTTGTTCAGTATGGATCAAAAATCAGAACTGAACTGTCATTGAATGAGAAAGACGGGCCAAAAGCTATTGAAACGGTCAAAAACATTGAACAGATCGAAAACGCCACAATAACTGCTTCAGCTATTATCTATACAATTGAACATGTTTTTGTTCCTGAGAATGGGTCCAAAGAGGACTCCAAGAAAATCATGATAGTGGTGTCAGATGGAGCAATATCCTTTTGGGATAAGAAACATTTGGAAAAAGCAAAGAAATTGCTTGAAACAAAAAATATCACCAGATTTGCTATTGGGGTTGGTAATCAAACCAAAATAGACGAGTTGAAGATTATTAGCAACAGTGAGAGTAACCTGTTCTTGGTTGGTGACTATAAAGCCTTGGAGGGCATCCTCTCCAAGCTAAAGACCAGTATCATCAAAGGAATCGAAGGAATCAAGCAGGGGGATGGCTTTCAATTTCAACTTGCCGAGGCTGGATTCAGTAATCACATTGCACTAGATggGTCCTTACTGTTCGGCGCAGTGGGGGCCAATGACTGGAGTGGAGGAGTGATCTTAAAACACCCCAAGGAGAATAAGGTCACCTTCTTAAATGGGTCATCCTCAGAGCCAAGGTTCTCCTACTTAGgTTACAGTGTTGTGTCTGCCATGGGCCCCTCAGGGACTCTGTACATCTCAGGGGCCCCTCGTCACAGCCTGACTGGTGGGGTCTTTGTCTTTATTGCAACTTCACACAAACTGCAGGAAATACTACTGGGTGACCAGGTGGGCTCTTACTTTGGCTCTGTGTTATGTGCCCTGGACTTTAACGGGGACACTAAGACAGACTACCTGCTGGTAGGAGCACCGTACTtccaccagagaggagaggagggcagagtgATCATCTTCAAGCTAAACCAGGCCCAGGGTAAGTTTGATAAGGAGCCCTGGGAGTGGCATGGGCTGGACAGCTACATATATGCCAGATTCGGTTCAGCCATCTCTTCTGTTGGAGACCTGGACGGAAACGGATACAATGACGTGGCAGTTGGAGCTCCTCTGGAGGAAGATGAGACATGTGGCTGTTCTGGAAGCATCTATATCTATAACGGAGTCCAAGAAGGACTTCAGAGGGACCACTCTCAGAGAATTAAAGCTGCAGAGTTTGAGATGAAACTCCGCCACTTTGGCCAGTCTGTGAGTGCATTCTCTGACAAAAAAAGTGCCGATGGGAGGAGACAGCTTTACATCAGTGTCGGGAGCCAAGGCACTGTCACTGTCCTGAAAACAATCCCTGTCATCGTCTTTAAACCCAAGCTGACCATGAAGCCTAACACCATCCCCACATCCGCGCAGACAAACTCAAAAACCAAGATGGAGCAGGTCACCCTGGCCATCTGCTTCCAAGCACAAAGGGGAAATATTGgccCTGGTGAAGAACTTCCCATATCTTACAACATAGATCTGGATGCAGGTCAAAACAAAAAGCGCCTGTCTTTTGAGGACAAAGCAAATGGGGAAGGCATCTTCACTATACTTTCTGATACAAACTGCCTTAACCCCATCAAACTGTTTTTTACGGGTTGCTATGACTGCTTCTCACCGATAGAGATCAAGCTAAACTTCAAGTTGAATACCACTGAACCACCTCTCCGCATTCTGGATTTCTGTACTCCCACAGAGTTCACAGAAAAGATTCAATTTGAGAAGGAGTGTGAGGTGAAAGACAAATGCAGGGGAAACATATCCTTATCTGATTCAAGGCTGAGCAAGGATATGGTCATAATAGGAATGACTCAGAACTTGATGATTGACTTCAATCTGACCAACTTTGGGGATAGTGCCTACATGACAACACTTGTCCTGGCATATCCCAACATGCTCCTTTTTAACAAGTTCACAATGAAAATGGAAGGGTCTGTTTGTGAGAACCAAGTTAATGAGAATATTTCTTATTTGAAGTGTCATCTCTTACATCCAGTCTTCAAGAAAAATACCCAGGTACATTTCTCCATCTCCTGGCAGCTTGTGAACAAGAAATCAGAGATGCGAGAGGCTGAGATCACAGCAAACCTCACATGTGAGAATGGTGGCACCCAGGTTTTGTATTTTAAGACGTACCACTTTGGAATAAAGAACGCTTTAAAGGTCCAACTGACTGGGGAGGCCACACCGAACATTGTAAAACTCACGGACCAAGCCATTGAGAATAAAGACCTGACATTTAAGTTTCAGCTTCACGGTGAGAACAAACACAATGCAACTATACGCGTTAACATTACAATAACAGCACAGGCACGTCACACCAAAATTACAATCAAGAGTATTACACCTAagGAGAGATGTGGAAATCCAGAAGTAAATGCCTTCGGGGAGTATCTCATTCAGTGTTCAGTGACAGATGTACAGGAAATCACGGTTGAGGCTGAGGCTTCAATCAGAGAGTTTTCGGGTACATCTGAGAAAATTACAGCTAAAGCCACTCTGGGATTTGATGAAGACCGATTCGAAGCACTGGAATTGAGATCGATGGAATCAGTGGAGGTGATGATTATCAAACTGGCAGTGGAGAAATCATTGCCCGTCATCATCGGAGGCTCCATTGGAGGCTTTCTATTTCTAGCGATAATCATTGTCATACTCGTTAAGTGTGGCTTTTTCAAACGACGCCATCAAAAGGATATAGCAATGGATGCTGAGTGATGCTTTGTCACTGGTAAGATTAGTGCTGAATGCTAAATTAGCCTTTTGAAAGCTGGAGCCTTGTGTAACTTGGGGGATTTTACCATAAAACAATATCCATGCTGGATCTGCATGGTGTTCCACTGAACTTTAGCCTTAGCAGCCAAAATGCCCATAAGAAATTTGCATTGTTGAGTGATTTAATGAGAACTTTGAAATATGATAAAGCCATGTGATCCAAGAGACGCTTTGTTTTGAGTATTTTGTaaaatattgtttttgtatttttttgagtATTGTACATTCATACATATTCAGATAATTGACTTAGCCTACTGTGATGActgttttaaaatattttatattgtaCGGTTTTATACAAAATATTACTCAATTAGAATATAGCACACTTTTTAAAAATTGACTCATGTTTGTATTATGAGAACTTTGAAATATGACAGAGCCACATGATTGATGAGCCACTTTGTTTTGAATTAGTTAAGTATTTTGTTACATATTGCATATTTCTACATATGGAGATAAGTGACTTACACTGTGATGTCTGTGTTTTTAAAGTATTCTATACGGTAAGGTTTACTATAAAATATGACTCATATTTCTTGTGTACATTTATTATTTACCTTGGTGTAAATTGCCTCAACGTTTTAGTTTTAAAATGTTTGCTCTAAAGAACTAAATACAAAGATTAAATGAAAAATATTATCTTGAAAGCAAAACATGATTTTTCTGTTCTAAATCTCAACATGCTTtgtaaaaaggttaaataaagtctCAGCTGCTGTtaaa

Function

symbol description
itgae Predicted to enable metal ion binding activity. Predicted to be involved in cell adhesion and integrin-mediated signaling pathway. Predicted to be located in plasma membrane. Predicted to be part of integrin complex.

NR:

description
integrin alpha-E-like

GO: NA

KEGG:

id description
K06524 ITGAE, CD103; integrin alpha E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582517.2 True 4281 mRNA 0.41 31 17658458 17671274

Neighbor

gene id symbol gene type direction distance location
LOC110503896 LOC106612812 coding downstream 187 17640378 ~ 17658271 (-)
LOC110503892 LOC106612816 coding downstream 108965 17533121 ~ 17549493 (-)
LOC110503890 LOC106581067 coding downstream 329035 17325594 ~ 17329423 (-)
LOC110503457 LOC106612822 coding downstream 376933 17279898 ~ 17281525 (-)
LOC118944080 LOC106612823 coding downstream 379934 17277554 ~ 17278524 (-)
LOC110503899 LOC106612809 coding upstream 29031 17700305 ~ 17716362 (-)
LOC110503901 LOC106612808 coding upstream 67914 17739188 ~ 17814508 (-)
LOC110503902 LOC106612804 coding upstream 154918 17826192 ~ 17831204 (-)
LOC110503459 LOC106612753 coding upstream 164665 17835939 ~ 17837025 (-)
LOC118943999 LOC106612753 coding upstream 171434 17842708 ~ 17843664 (-)
G1908812 NA non-coding downstream 30329 17627929 ~ 17628129 (-)
G1908811 NA non-coding downstream 32254 17625936 ~ 17626204 (-)
G1908804 NA non-coding downstream 42318 17615927 ~ 17616140 (-)
G1908803 NA non-coding downstream 42963 17615257 ~ 17615495 (-)
G1908792 NA non-coding downstream 73669 17584524 ~ 17584789 (-)
G1908831 rrp8 non-coding upstream 19807 17691081 ~ 17691428 (-)
G1908832 NA non-coding upstream 20287 17691561 ~ 17692283 (-)
G1908786 NA non-coding upstream 56007 17727281 ~ 17727534 (-)
G1908849 NA non-coding upstream 60858 17732132 ~ 17732349 (-)
G1908874 NA non-coding upstream 99920 17771194 ~ 17776860 (-)
G1907951 NA other downstream 1497232 16158846 ~ 16161226 (-)
G1907922 NA other downstream 1525896 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 1614153 16036987 ~ 16044740 (-)
G1906218 NA other downstream 2145365 15512359 ~ 15513093 (-)
LOC110503924 LOC107554284 other upstream 760750 18432024 ~ 18434798 (-)
LOC110503944 LOC106612932 other upstream 1296788 18968062 ~ 19185772 (-)
G1910398 NA other upstream 1489175 19160449 ~ 19162158 (-)
G1910539 NA other upstream 1661567 19332841 ~ 19333225 (-)
G1910651 NA other upstream 1819443 19490717 ~ 19491608 (-)

Expression


Co-expression Network