LOC110503899 (LOC106612809)


Basic Information

Item Value
gene id LOC110503899
gene name LOC106612809
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 17700305 ~ 17716362 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582525.2
catatttgaaTACCCTCATAGGAAGACTTGCTGTAGTCAAATTGAATCATCACTCTCAGTGATACCACCATGGGATGCTCAGGGCTGTTGATTTTGGGCTTTGTCCTAAATGTGTCTCACTGCTTGGACATGCTGGATATGGAGGAGGACATGGAGATTGATCGTAACGTCACTGGGATCCTTGGAGAGGACATCTTCCTCCGCTGTCAGTACCTGGgacagaatgacatcacagacgCCTCATGGAAACGCCCAGACTCTAGAATTAAGCGATCGATGAAGAAATTAACAGGCTACAAGAACAACAAGGCTTTCAGCAAAGACCCAGACTTCTCCACCCCAGCCTCTCTCACCAATCTGACTGTGAAGATGAGGGTGTCTACTCTGGAGGCTCAGGGGGAGTACACATGCGTGTTTGCCACTGATGAAGAGGAGATCACTAACAGCATGTTTCTCACTGTCCTGGCTCGACCTGATATCCACACAGAGGTGACAGAGGACACAGACAACGCTACCCACTACCAGTCAGTCACATGCTCAGCTACCAATGGTAAACCTGTGGCTCTGATTCGCTGGGAGATCAACGGCAGTCCTCCTACTGACaactcctctgtggagatgagcaACACCAGTTATACCAATGGCACTGCCACTGTGACCAGCATTCTCCGCTTCCCCACCCACCTACAGGACCAGGACAGGGTGACCTGTGTGGTCCAGCACCCAACCCTGCCTGACCCCACCACACATGTCACAGTGGGGGTGGAGACCTTCATGGCTCCCAATGTGACCATTGAGACATACCTGGTTCTAGAGGACGGGGAGGAGTTCTGGGTGGTCACCTGTGGTGCAGCTGGAGGGCGACCCCGAGCTGACATCACCCTGGTCCTGCTCAATCGGGAGGCCAGTTCCATGCTACAGAAGGAGGTTGTCATGGATGCAGCAGACACATTGGTCAGGTCATACCGCTTCCCAGCTGAGCTTCATGAAGGGGAAAACATCACCTGTCTGTTTGACCACCCCAAGTTCCCACACAGAGAGCTACGGACCACCACTTTGCCGGCATTCTATCTGTCTGCTGTTCGGCTGCTGAACCCAGGGTTGACAGACCGCAGCAACAAGAGCCAGGCTGTAGAGTCAGTGGTTCTGGAGGAAGGACAGAGCAAAACCACCATCGGGCTAAAGGTCGTTGGGGATGTACCACGTTACAGTATCGTATGCACCAAAGAAGAGCAGTCTCTccctgaaggtgtggaggtgATTGGCAGTGTTCTAACCCTGCAGGGTCCTGTGGAGCTCTACCATGCAGGGCTGTATGAGTGTGAGGCCTCCTACTACAGCCACAGGGCATCTGTACTGCTGGACATTACCGTTAACCCACAAGTAAAGCAGTCTGTGACTGTTCCTCCCAGCATAAGGATTGATGTCCAGGACAGACTGGGTAACAGGTTCATTGAGTGCCTGGCTGCAGACTCTGTCCCCATTGCCAATGTGTCCTGGGTTCTACCTGAGGGTGTGTCTGGGCCCTCCTGGTCCAGTCTCACATCCCATAATGGAACCCACTCTGTCAGCAGTGTGTTAGTCCTGCCTGCCTGCTCAGCCCAGGAGCTCAATATGGAGTGTGTGATAGATCATTCTGTGTTTGTGTtgccagagagaagacagataaCACTCCCCGTGTGTGCTCCTCCTAACATCACCATCCAGTCCAGCTCTGAGTGGGAGGAAGATGTAGCATACACACTGGTGCAGTGCACTGTGGACAGTGTTGGACCTGCTGCCACTATCTCCTGGAGTCTTGGAGACAGGGACAGTGACAATAGTACCAGTCAGCTTAAAGAGGGGCAGGAGCAGGATCAGGGGCAGCCTGAGCACCATGCCAATGGCTCTGTGACGGTCTGTAGTGTGTTGAGGCTCCCCACTTCCATGTTCTCTGGTCAGAATGTCACCTGTGTGGTGGATCAGCTGGGTCTTGAAAGGCCAGAGAGAAGAGGGATACTGCTGCGTGGATTGGaGTCCCCTGTGATGCGTGTTTTTGTTGCGAGGCAGAGCAGATCTCTGTGGTTGGCTGTGTGTGAGTACAGAGGGGACGGGATCAGAGCACACCTCTCCTGGGTTCTACCTGACAACACCACAGGCCACATCTCCTTCCGCTCTGGGTATGAAGGTGTGAGAGTGCTAACCAACCTCACCTATGAGTTCCCACTGGCCCTCCATGAGGGACAAGACCTGACTTGCCTCTTTCAAAATCACCATGGACTTAAGGAGAGGAGGACAGTCCATGTCCCCAGATACTACATATCATCTGTCAGACTACTGAACCAAACCACTCCCCTGTACAAACCTTATGGAGACGAGTCCGTTATACATCGAATGTCTCTAAAGGAGAATTTCCAAAACCAGAGGATCCTGCTCAAAGTCTATGGCAGTGTACCAACTTACAACCTCACCTGTCACAGAAATGATGGCTCATTGGTCCAGATGGATGGCGGAGCTCTGTTGTTCCAGTCAAAGGTCACGGAGCAGGATGCGGGCCTCTACACCTGCCACGCCTCTTTCTACCACCATAAGGCCTCAGTCCTCATTCAAGTGGAGGTCACCAGTGAAGATAAACAGCTCAtGATGGTCTTCATCGTCTGCTTCTCCTCGGCTGCGGCCATCTCGATCCTCCTCATTGTCACTTTGTGTGTTTTCTGCAAAATAAATGGAGGAGACCGCCCAGGATCTAAGAAGCGCGAGTCGCTGGCGCCCCTGACCTCTCTGACCCAGGACCTGTGCTCTCCAGAGTTGAGGAAGGGGAAGGCAGCAGTGACAGTACCAGGAGGAGGAGGCCAGGAGTACAACCAGCTGCTCAGCTACTCTATTGTCATTGATGCCAGATCCACTGTGTAAATAACAGGGTGCACCCCCTACTGCCACCATATAGAGCACTACTTGTGCActgtataggaaatagggtgtcatttgagtcTGGTTGATTTAGTTTGgtaggtttaaaaaaaacatactcAGTAAATGCATTTTAAAAAACTTGACAAGGATATCGGAAAAGTCagagacttatttccattgtggtccctaaATGCAAAAACATTACAacatcacatacagttgaagtcggacgtgtacatacaccttatccaaatacatttaaactcagtttttcacaattcctgacatttaatcctagtacaaatgccctgtcttaggtcagttatgatc
>XM_021582526.2
catatttgaaTACCCTCATAGGAAGACTTGCTGTAGTCAAATTGAATCATCACTCTCAGTGATACCACCATGGGATGCTCAGGGCTGTTGATTTTGGGCTTTGTCCTAAATGTGTCTCACTGCTTGGACATGCTGGATATGGAGGAGGACATGGAGATTGATCGTAACGTCACTGGGATCCTTGGAGAGGACATCTTCCTCCGCTGTCAGTACCTGGgacagaatgacatcacagacgCCTCATGGAAACGCCCAGACTCTAGAATTAAGCGATCGATGAAGAAATTAACAGGCTACAAGAACAACAAGGCTTTCAGCAAAGACCCAGACTTCTCCACCCCAGCCTCTCTCACCAATCTGACTGTGAAGATGAGGGTGTCTACTCTGGAGGCTCAGGGGGAGTACACATGCGTGTTTGCCACTGATGAAGAGGAGATCACTAACAGCATGTTTCTCACTGTCCTGGCTCGACCTGATATCCACACAGAGGTGACAGAGGACACAGACAACGCTACCCACTACCAGTCAGTCACATGCTCAGCTACCAATGGTAAACCTGTGGCTCTGATTCGCTGGGAGATCAACGGCAGTCCTCCTACTGACaactcctctgtggagatgagcaACACCAGTTATACCAATGGCACTGCCACTGTGACCAGCATTCTCCGCTTCCCCACCCACCTACAGGACCAGGACAGGGTGACCTGTGTGGTCCAGCACCCAACCCTGCCTGACCCCACCACACATGTCACAGTGGGGGTGGAGACCTTCATGGCTCCCAATGTGACCATTGAGACATACCTGGTTCTAGAGGACGGGGAGGAGTTCTGGGTGGTCACCTGTGGTGCAGCTGGAGGGCGACCCCGAGCTGACATCACCCTGGTCCTGCTCAATCGGGAGGCCAGTTCCATGCTACAGAAGGAGGTTGTCATGGATGCAGCAGACACATTGGTCAGGTCATACCGCTTCCCAGCTGAGCTTCATGAAGGGGAAAACATCACCTGTCTGTTTGACCACCCCAAGTTCCCACACAGAGAGCTACGGACCACCACTTTGCCGGCATTCTATCTGTCTGCTGTTCGGCTGCTGAACCCAGGGTTGACAGACCGCAGCAACAAGAGCCAGGCTGTAGAGTCAGTGGTTCTGGAGGAAGGACAGAGCAAAACCACCATCGGGCTAAAGGTCGTTGGGGATGTACCACGTTACAGTATCGTATGCACCAAAGAAGAGCAGTCTCTccctgaaggtgtggaggtgATTGGCAGTGTTCTAACCCTGCAGGGTCCTGTGGAGCTCTACCATGCAGGGCTGTATGAGTGTGAGGCCTCCTACTACAGCCACAGGGCATCTGTACTGCTGGACATTACCGTTAACCCACAAGTAAAGCAGTCTGTGACTGTTCCTCCCAGCATAAGGATTGATGTCCAGGACAGACTGGGTAACAGGTTCATTGAGTGCCTGGCTGCAGACTCTGTCCCCATTGCCAATGTGTCCTGGGTTCTACCTGAGGGTGTGTCTGGGCCCTCCTGGTCCAGTCTCACATCCCATAATGGAACCCACTCTGTCAGCAGTGTGTTAGTCCTGCCTGCCTGCTCAGCCCAGGAGCTCAATATGGAGTGTGTGATAGATCATTCTGTGTTTGTGTtgccagagagaagacagataaCACTCCCCGTGTGTGCTCCTCCTAACATCACCATCCAGTCCAGCTCTGAGTGGGAGGAAGATGTAGCATACACACTGGTGCAGTGCACTGTGGACAGTGTTGGACCTGCTGCCACTATCTCCTGGAGTCTTGGAGACAGGGACAGTGACAATAGTACCAGTCAGCTTAAAGAGGGGCAGGAGCAGGATCAGGGGCAGCCTGAGCACCATGCCAATGGCTCTGTGACGGTCTGTAGTGTGTTGAGGCTCCCCACTTCCATGTTCTCTGGTCAGAATGTCACCTGTGTGGTGGATCAGCTGGGTCTTGAAAGGCCAGAGAGAAGAGGGATACTGCTGCGTGGATTGGaGTCCCCTGTGATGCGTGTTTTTGTTGCGAGGCAGAGCAGATCTCTGTGGTTGGCTGTGTGTGAGTACAGAGGGGACGGGATCAGAGCACACCTCTCCTGGGTTCTACCTGACAACACCACAGGCCACATCTCCTTCCGCTCTGGGTATGAAGGTGTGAGAGTGCTAACCAACCTCACCTATGAGTTCCCACTGGCCCTCCATGAGGGACAAGACCTGACTTGCCTCTTTCAAAATCACCATGGACTTAAGGAGAGGAGGACAGTCCATGTCCCCAGATACTACATATCATCTGTCAGACTACTGAACCAAACCACTCCCCTGTACAAACCTTATGGAGACGAGTCCGTTATACATCGAATGTCTCTAAAGGAGAATTTCCAAAACCAGAGGATCCTGCTCAAAGTCTATGGCAGTGTACCAACTTACAACCTCACCTGTCACAGAAATGATGGCTCATTGGTCCAGATGGATGGCGGAGCTCTGTTGTTCCAGTCAAAGGTCACGGAGCAGGATGCGGGCCTCTACACCTGCCACGCCTCTTTCTACCACCATAAGGCCTCAGTCCTCATTCAAGTGGAGGTCACCAGTGAAGATAAACAGCTCAtGATGGTCTTCATCGTCTGCTTCTCCTCGGCTGCGGCCATCTCGATCCTCCTCATTGTCACTTTGTGTGTTTTCTGCAAAATAAATGGAGGAGACCGCCCAGGATCTAAGCGCGAGTCGCTGGCGCCCCTGACCTCTCTGACCCAGGACCTGTGCTCTCCAGAGTTGAGGAAGGGGAAGGCAGCAGTGACAGTACCAGGAGGAGGAGGCCAGGAGTACAACCAGCTGCTCAGCTACTCTATTGTCATTGATGCCAGATCCACTGTGTAAATAACAGGGTGCACCCCCTACTGCCACCATATAGAGCACTACTTGTGCActgtataggaaatagggtgtcatttgagtcTGGTTGATTTAGTTTGgtaggtttaaaaaaaacatactcAGTAAATGCATTTTAAAAAACTTGACAAGGATATCGGAAAAGTCagagacttatttccattgtggtccctaaATGCAAAAACATTACAacatcacatacagttgaagtcggacgtgtacatacaccttatccaaatacatttaaactcagtttttcacaattcctgacatttaatcctagtacaaatgccctgtcttaggtcagttatgatc

Function

NR:

description
uncharacterized protein LOC110503899 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582525.2 False 3222 mRNA 0.51 15 17700305 17716362
XM_021582526.2 True 3219 mRNA 0.51 15 17700305 17716362
Loading

Neighbor

gene id symbol gene type direction distance location
itgae.2 itgae coding downstream 29031 17658458 ~ 17671274 (-)
LOC110503896 LOC106612812 coding downstream 42034 17640378 ~ 17658271 (-)
LOC110503892 LOC106612816 coding downstream 150812 17533121 ~ 17549493 (-)
LOC110503890 LOC106581067 coding downstream 370882 17325594 ~ 17329423 (-)
LOC110503457 LOC106612822 coding downstream 418780 17279898 ~ 17281525 (-)
LOC110503901 LOC106612808 coding upstream 22826 17739188 ~ 17814508 (-)
LOC110503902 LOC106612804 coding upstream 109830 17826192 ~ 17831204 (-)
LOC110503459 LOC106612753 coding upstream 119577 17835939 ~ 17837025 (-)
LOC118943999 LOC106612753 coding upstream 126346 17842708 ~ 17843664 (-)
LOC118944000 LOC106612753 coding upstream 133111 17849473 ~ 17850429 (-)
G1908832 NA non-coding downstream 8022 17691561 ~ 17692283 (-)
G1908831 rrp8 non-coding downstream 8877 17691081 ~ 17691428 (-)
G1908812 NA non-coding downstream 72176 17627929 ~ 17628129 (-)
G1908811 NA non-coding downstream 74101 17625936 ~ 17626204 (-)
G1908804 NA non-coding downstream 84165 17615927 ~ 17616140 (-)
G1908786 NA non-coding upstream 10919 17727281 ~ 17727534 (-)
G1908849 NA non-coding upstream 15770 17732132 ~ 17732349 (-)
G1908874 NA non-coding upstream 54832 17771194 ~ 17776860 (-)
G1908929 NA non-coding upstream 120777 17837139 ~ 17844116 (-)
G1908932 NA non-coding upstream 131569 17847931 ~ 17854106 (-)
LOC118944080 LOC106612823 other downstream 421895 17277554 ~ 17278524 (-)
G1907951 NA other downstream 1539079 16158846 ~ 16161226 (-)
G1907922 NA other downstream 1567743 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 1656000 16036987 ~ 16044740 (-)
G1906218 NA other downstream 2187212 15512359 ~ 15513093 (-)
LOC110503924 LOC107554284 other upstream 715662 18432024 ~ 18434798 (-)
LOC110503944 LOC106612932 other upstream 1251700 18968062 ~ 19185772 (-)
G1910398 NA other upstream 1444087 19160449 ~ 19162158 (-)
G1910539 NA other upstream 1616479 19332841 ~ 19333225 (-)
G1910651 NA other upstream 1774355 19490717 ~ 19491608 (-)

Expression

LOC110503899(LOC106612809) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110503899(LOC106612809) Expression in each Bioproject

Bar chart with 20 bars.
LOC110503899(LOC106612809) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network