LOC110503905 (LOC106612802)


Basic Information

Item Value
gene id LOC110503905
gene name LOC106612802
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 17963258 ~ 18015869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582536.2
CCTTTCTGAGTGATGACGCAGTCAGGGGAAAGTGTGAGGAACGAGAAAGGGTGTCCCGTCCGCACTAGCACAGACTGCACCGAACAGCTGCAGCCTAGGTTCACATAGAGTTTCACAGCATTGCGAGTAGTACACATATAATTTCATCCCAAAACCTATAGAATAACGTTCACACTAACTAAATATTAAAATGGTTGATCGCGAGCAGCTGGTGCAGAAAGCCAGGCTGGCTGAACAGGCTGAAAGGTATGATGATATGGCAGCTGCCATGAAATCGGTAACAGAGCTGAATGAGGCGCTATCTAATGAGGAGAGGAACCTCCTGTCTGTGGCCTATAAGAATGTGGTCGGGGCCCGTCGTTCCTCTTGGAGGGTGATCTCTAGCATCGAGCAGAAGACCTCTTCAGATGGAAATGAGAAAAAGATTGAGATGGTTCGGGCCTACAGAGAGAAGATTGAGAAGGAGCTAGAGACTGTGTGTCAGGACGTGCTCAACCTGCTGGATAACTACCTGATCAAGAACTGCAACGAGACGCAGCACGAGAGCAAGGTGTTTTACCTGAAGATGAAAGGCGACTACTACCGCTACCTGGCTGAGGTGGCCACGGGCGAGAAGAGGGCCACCGTCATTGAGTCATCAGAGAAGGCTTACAACGAGGCCCATGAGATCAGCAAAGAGCACATGCAGCCCACCCACCCCATCCGCCTCGGCTTGGCTCTCAACTACTCTGTGTTTTACTACGAGATCCAGAATGCCCCTGAGCAGGCCTGTCATCTGGCCAAGACCGCCTTCGATGACGCTATTGCTGAGCTGGACACCCTGAACGAGGACTCCTACAAAGACTCCACTCTCATCATGCAGCTGCTCCGAGACAACTTAACACTGTGGACAAGTGACCAGCAGGATGATGAGGGAGGGGAGGGCAACAAAGATTAATAAACCACACTTAGAAAAGATATATAATGAAGGGCCGGTGGGCTTTGGCAGGCGCTTTTGCTGATGATCTTACCGCAGCAGTTCTTTATTTTTCCATGTGTTAAAATAAAAGAATCAAAAGAAAGGTGAGGGGAGGTTACATCTTAGGCTAATATATATATCGATATATATGGTTGAAAGGGCCTCCGTCTTCTTGATTTTATCTTTGACATTTGCCAAAACCACTGAAATGTCAGTCAATCCTGAAGTGGTTGTTGTTGGATTGGTTTGGCAGTCTCACACTGGCATAGGGACTGGTGTCGTACCAAGGGAAGCTGCTTAGTTAGGTTTATGCATGATAGAGATGCAGACACTTGAGGAAGGGGGGAAGTTTGCAAATAGTTTGCAATGGTTCCAGTACTAGCAACTcagccacttttcaacctcatattcattatctcagcaccaaaccagtgtctacTTATGTGAAAACATTgcgtttctatgatctgtggttaaaaagataaGAAGAAAGGTCCTAAAAAAATGATTCTGTGACGTCACAGAATTTCTAGCCAGAGATGGGTTCTTGCTCCCCACGTCACCGCAAATCTCatagtgtttgaaaatcactttttttgttgtgaatttgaacatgaattATGCCTCTATTTTTTTTGTACCTAATGATCAATGAAAACTTGCTCGGTAGGTctgtcctcattgtggttttacaggcGTGTTTAATACGTCTTAATAACACACTTCATTTGAATATTTATGACATGCGTATCtggtagcacttatttgtttttccttcGCCTCCAACCCCTTTCGATGTgggtggggctaggtctacataaagGTGCTAGTTTTAAAAAACCTCAcaaaagctctgatgaaggccgtgaggccgatacataagcttattaaagatcagtgatactatcaagagcagtgtttCGTTTTTCATTCAAAATCACAGTTTTTAAAATGTTGACACTTTTGATGTCATCAGGTAGAACATTTTAAtgctatttttttatatatttttttaagtcaacaaaacatacattttcacatatgtagacatTGGTTtagtgctggagatgatgaatatgaggtTTGAAAAGTTGCGGAGTTGCCCTTTAAGTTATATCACTCACTCTTGAAGGGAGTGCAGGACAGCCAAGAAAATGCTAATAGTATTAATCTGACCAAATCAACTAGAAAAAGTCAAATGCAGATGTTTGGTTAAAATGTTTGATGTTTATTGTAAAGGATAAAATACTGTTATCAATTTACTCTTTCACATGACTTCTAGTTTTAGGTATATTTGGCATTAAATCTAATGTGACTGTCCTCTGACAGCTCTAAATATGATACTGGAACCATGGCTTAACCTCCAATAGAGTCTATCTAAAGGCAGAGACAGTTTAAAACTGAGTCATTATGTTAAAGCAGCTGCGGAGTTTGTGGTTTACTTCTGTGTTTGTTTTATTAAATGCACTTGCCTACTACACTGTTTCTTCAGTGTAAGATGATTACTACAATAATATCGATTATTCAGTATTGTGCATGCTGGTGAAGTATTTAAACATACAGTAGCTTGACTTTATTAACTTATACTGTGGGTGTTAAGTATTCATATGATTGAGAAAACATAGGCTTTGTCTGATTATTTCTTATTTATAActtattcatatttttattttttttgctataTCAAAATGTTGATCGTAAAAATGGACATGTTATGAGCATTGCTATAGTGACATGCAATATGTATTTAATTTGTTAATGGAAGGGGAAAAACACACCGGTGATTGCTTAATCTTACCAACTGGTGTTTGTCATGTTAAATTATAATAATTGCTTTGTCACATTAAATTATAATAATGGCTTTGTCATGTTAAATTATAATAATGGCTTTGTCACATTAAATTATAATAATGGCTTTGTCACATTAAATTATAATAATGGCTTTGTAAAACAAATACTTTGTTCTTTGAACTATTTGATGACTTATTTTGTCATGTTATTAACCAGTTTGAACAATGGTGAAGTTTTCAGAATCTGTTTCTGTTATGAATTCACCACATGGACCACAATATATTTCTGACagtatacatttttttggtttgtttttatACCTTTTAGCTGTTTGAGTGACGAATATCTTGAATGTGAGTCATTATGTAGCAGTTGCACAAGAAACGAGAACTATGATTCTAATTTAAAAAAACTATATGACAATTTATAAATGCACCATTTCCATGGCAGTCTGGTGTATTGTTGTAATGTCACTAAGTCAACGTTTGTGTTTTGTTGTAACCTCGTGTGTGCTGCTAGTATGCTATTCTTGAAATAGTTGATTCAGCATACTCCATAGGCATCCTCCATAACCATATATGGAAAAAGAGAATTATAACAACACAATAAAAACCCACTTATGCTTTTAGATCCACACAAACTTGCATGACTCCAGTGCAGTGAATGCACATTTATGCTCATGCAATATAATGCAAAAGCTAGTCAAATAATAGCTGGCtattaggacttcaggttgaagCAGACAGGGAGAGTCATTTGTCATACACTGTTAACATGATTTACCACCGAGGGTTGAATGTCCCAACTGAATGATTCCCACGAGGACAAAAGAACAGATCTAAATGATCTAGGACTTTAAcagtgtcccaaatgccaccctcttccctatatagtgcactacttttgaccagagccctatggggtcttggtcaaaagtagtgcactatagggtgcCTATAGGTgcctatagggtgccatttgggacgccatTTATTCTTTAACTCATTGTACATCGCACATCCTCTGAGCTAACCATGTATCCGAATAGATATTGCTGAGGATCTTGTTTTCCATTTTGCTGCTATGTTCTAGATTTTATTAGATTTATAATCTTGATCATAATTGGCCAAAACTCAGCAATTTATTATCTGGCCATTATCTGCCCTGGCAAACCCAAACACCTTGAGGTGTGTCCGATTTAGATATTTATATTCATAAACCTAGGGTGTTACTTTATGCCATTCATCTAGTGCCAtcaacagagagacagtgttatacCTTCCATTTTTGCCATGCTAATCTAAGAACGGTTAACACATGTCATTTAGTAAGTACAGTTAACACATGTAATTAAACCTGGTACTTCATTAATTTACATAGTCCCTTCTGGTATACAAGGCCACTTTGGAACCCTGTATGTTACTTTTCTCTCTGTATGTCAACGTAGATGGTGAGAGTTAACAATTCAGATTGCTTTTCCTCTGAAATAAACTTTAATTTGCTTGGTGTAGATTTTTGGACACATCAGAAGGGATGGTTCATTCATTAAGTacatgttttgtttgtgtttttattttattttcaatttgTTCATTCAGATCCTTGTGTCTGTAAGTTCAGGCAGAACACCACTGTAACATGTATGCTCTCTTTTCTCTGAAATTAAATTAAACTTCCATTGAATCAA
>TU2183239
AGACAATTTACTGAAGTTAAAATCTTTATTCCCTATAAGGTGAACTATTTTTGCCAAGAGCCCAAAGagtctagtcaaaagtagtgcaCTATAGGTgcctatagggtgccatttgggacgccatTTATTCTTTAACTCATTGTACATCGCACATCCTCTGAGCTAACCATGTATCCGAATAGATATTGCTGAGGATCTTGTTTTCCATTTTGCTGCTATGTTCTAGATTTTATTAGATTTATAATCTTGATCATAATTGGCCAAAACTCAGCAATTTATTATCTGGCCATTATCTGCCCTGGCAAACCCAAACACCTTGAGGTGTGTCCGATTTAGATATTTATATTCATAAACCTAGGGTGTTACTTTATGCCATTCATCTAGTGCCAtcaacagagagacagtgttatacCTTCCATTTTTGCCATGCTAATCTAAGAACGGTTAACACATGTCATTTAGTAAGTACAGTTAACACATGTAATTAAACCTGGTACTTCATTAATTTACATAGTCCCTTCTGGTATACAAGGCCACTTTGGAACCCTGTATGTTACTTTTCTCTCTGTATGTCAACGTAGATGGTGAGAGTTAACAATTCAGATTGCTTTTCCTCTGAAATAAACTTTAATTTGCTTGGTGTAGATTTTTGGACACATCAGAAGGGATGGTTCATTCATTAAGTacatgttttgtttgtgtttttattttattttcaatttgTTCATTCAGATCCTTGTGTCTGTAAGTTCAGGCAGAACACCACTGTAACATGTATGCTCTCTTTTCTCTGAAATTAAATTAAACTTCCATTGAATC

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0007420 brain development biological_process
GO:0005737 cytoplasm cellular_component
GO:0019904 protein domain specific binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582536.2 False 4436 mRNA 0.39 2 17963258 17973190
TU2183239 True 819 lncRNA 0.35 2 17963260 18015869

Neighbor

gene id symbol gene type direction distance location
LOC110503460 NA coding downstream 36324 17923724 ~ 17926934 (-)
wu:fc27b11 NA coding downstream 103862 17855290 ~ 17859396 (-)
LOC118944000 LOC106612753 coding downstream 112829 17849473 ~ 17850429 (-)
LOC118943999 LOC106612753 coding downstream 119594 17842708 ~ 17843664 (-)
LOC110503459 LOC106612753 coding downstream 126233 17835939 ~ 17837025 (-)
ca4 ca4 coding upstream 16039 17989229 ~ 17999629 (-)
LOC110503907 LOC106612799 coding upstream 64398 18037588 ~ 18042701 (-)
LOC110503908 LOC106612797 coding upstream 88807 18061997 ~ 18069560 (-)
LOC110503909 LOC106612796 coding upstream 102026 18075216 ~ 18081425 (-)
LOC110503920 LOC106612791 coding upstream 338749 18311939 ~ 18355479 (-)
G1908999 NA non-coding downstream 15208 17937713 ~ 17948050 (-)
G1908996 NA non-coding downstream 28677 17933975 ~ 17934581 (-)
G1908932 NA non-coding downstream 109152 17847931 ~ 17854106 (-)
G1908929 NA non-coding downstream 119142 17837139 ~ 17844116 (-)
G1908874 NA non-coding downstream 186398 17771194 ~ 17776860 (-)
G1909024 NA non-coding upstream 28043 18001233 ~ 18007350 (-)
G1909345 NA non-coding upstream 78664 18051854 ~ 18052194 (-)
G1909357 NA non-coding upstream 112857 18086047 ~ 18086265 (-)
G1909407 NA non-coding upstream 192681 18165871 ~ 18166177 (-)
G1909408 NA non-coding upstream 196979 18170169 ~ 18170403 (-)
LOC118944080 LOC106612823 other downstream 684848 17277554 ~ 17278524 (-)
G1907951 NA other downstream 1802032 16158846 ~ 16161226 (-)
G1907922 NA other downstream 1830696 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 1918953 16036987 ~ 16044740 (-)
G1906218 NA other downstream 2450165 15512359 ~ 15513093 (-)
LOC110503924 LOC107554284 other upstream 458834 18432024 ~ 18434798 (-)
LOC110503944 LOC106612932 other upstream 994872 18968062 ~ 19185772 (-)
G1910398 NA other upstream 1187259 19160449 ~ 19162158 (-)
G1910539 NA other upstream 1359651 19332841 ~ 19333225 (-)
G1910651 NA other upstream 1517527 19490717 ~ 19491608 (-)
LOC110503921 LOC106612790 coding upstream 347226 18363095 ~ 18383190 (-)
G1909461 NA non-coding upstream 237518 18253387 ~ 18253697 (-)

Expression


Co-expression Network