LOC110503907 (LOC106612799)


Basic Information

Item Value
gene id LOC110503907
gene name LOC106612799
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 18037588 ~ 18042701 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582539.2
AGCCGGTTTTGGCGAGAGCACGGGAACAGTAGTGGTGCTCTCTCAGTGCGCGTGGTGCTGAAAGTGCCATCTGAAGTAATGTGGTCggtattttttttctttctgtcttATCTGGACAGAAACTTTGTCAAAGGAGAATTCCCCAATTATTCCCTAGATGCAGAGAAACAGAGTAAAGAtgtgtttttcatgctcaacagcaCATTCTGTGCCAAAATGTCAGGCATGGGGGGAAATTGCTTTTACCAAGTGTCAGACGGAATTGAGGAGGTGCGCTCCGTGCATGACCCGGCAGGTAAACTGGTGGATTGCTCAGTAACCATCAACCAGATGCAGGTGAAGTCGTTCATGCATGTGTGCAGATTAGGACTGAAGCACCAGAGAAATAACCCAGGAGATATGGAGTTTAGTTTTACAGACATGGCAGAAGCCAAATACAACTGTCAAGCGTTCCAAAGGAGATCAAAGCGCACGACGGTCACCACGGAGAGGAAAGCCGCGCCAACAGCACATACACCGAAGGAGACGAGAGAGAATTCTGTCCAGGAGGATGGCAAGCAGGTGATACGGAGATCCAAGCGAGGATTCACTTATCCTGGAACCCTGTGGTGTGGAGCTGGCAACATGGCTGATAATTACGACCATTTGGGAGAGTTCACAGCGACTGACAGTTGTTGCCGCGTTCATGACTACTGCCCCTACGTCATCCATGCGTTTTCCTCAAAGTATGGCTATACCAATTTCAAGTGGCATCCCCTTAGTCACTGTGACTGCGATAATGCGTTGAAGGAGTGTCTGAGGAAAGTCAATGACACCTCCTCCAGGGTGGTTGGTCAGGCTTTCTTCAATGTCATTGAGGTGCCCTGTTTCCAGTTCATATATGAAGAGCAATGTGTGGAGCGCCACTGGTATGGCGTGTGTAAAAAGTATGACAAGCTCCTGGTTGCAGTGCCCAGAGAGTCCATCCTGTATGATTTCGGCGGCATTGACGTTATTGATGTGCTGACTGTGGCTCCTCTGGTacagaaagagacaaagaaaACAGGCATAGAGCAGGACAATCCTGAAAGCACAACACAGTCCACTGTGTCCGGCTCCCAGACCACTGGCCCCGAGGAGCCCTCTCTCAGCAACATGGTCACCGCAGCTGAAGACTTCATCAAATTTCTGGCCACCGTCTCCACCTCTCAGGGCTCGGCTACAGACACCACCAAAGGAGAGACACAGAcctcagagaagaagaagaggaagaacacTGCAgggaaaaataagaaaaataacaagaagaggaaagggaaaggaaaagggagaaagaggaagcAGAAAATCAACTCAGTCTCAAAAGGAGCAGAGGAAGGGACAATGGTTAGTCCTACCAAAGCAGCGGAAGCTGTCGACAAGAGTAACTTTGTGAATGGGCCTGAGGATGTTGACCAGTTGAACAGAAATGTCAACCGTTTCAGTGATGGTGAAGTAGATCGTGGAGGGAAAGAGGAGCTTTCTAATGATGTCATGAGAGATGAACCACATGTAGATGGAAAAAGTGCTGCAGATGCCTCTGTCACCTCAGTCACTGCTGTCAAGAAGGAGCAGACAATGCTGGAAATCCCGGCTCTGATGGATCCCACAGAAGCAGCGTCTCTCTCTGCAACCACTGGCACACCCATTGTGACCACACAGAAAACCAAAAGGAAGAGGTCAAGAAAGGGGGAAGGGAGGAAAAAACAGAGCAACGTAACGCCAACTGTCACCCCTACAGGAGTTGCACACCATACCGCCATTAAACAGGTCCTCCCAACTTCCACAACAGAGAGCTCTGGCACCCAGACCGTCCCTACCAGCACTGCCATAATCTCTGCAGATCAGTCTGTGCAACAAAGGTTAGAGAACCACAGTGAAAAGGGCCCTGTTACGACTACTGCCGGCACCCCCATTGTGACTTTTATCAAAAGCAAAAGGCACAGGTcaaaggagagaaaggaaagaaatAAAAGGAGGAAAATCACTTCCACTCTTCCCATGGTGGCTGTTACTTTCAGAAACCTCACTGAAGAGGATTTTGCAGTGATCACTACTGAGAGCACAAGTGCTCCAGCcttcaccaccatcactactgttAGCACTGCAGGGCAGCCAGTGTCACACAGACCAGAAAGTCACAATGAGAAGAGGTCCAATACCACTACGACTGTAAGCTCGACTTTGAGTGAGACCAAAAGGCACAggccgaaagagagagagggaagaaagttGAGGAGGAAAATCATACCACCTTTTTTGGCTGCGGGAACATCTCTGCAGAATCCCACTGAAGATGCCCTTCGTACAGTCACTACTGACAGCACTGGTGTACTGAACATCCCCACAACCACCACTGTAGTCGCTGCAGAGCAGGCAGAGACACTAGCGCCGCAGAGCATAGGGAGTCACAGTGAAAAGGGACTTCTCACCACAACAGCCAGCGTCCCCGTTGTGACTGGGAGAAGACAACGCTcaaaagagagggagggtagaaataaaagtaaaaaagaGGCCATAACCACTGTTGTCAAGGATGAGGTTCCTATCCATAATGAGAATGAAACTAAACTTGAAGAAATAATGACAAGTATAAGTCTGACACCCTCAGCGTCAGCAATTTCATCCAAAGTTGACGAAGTACGAGAGTTCAATCTACAGGAATCTGAGAACTACAGAGAACAGGCCCCCTTCCCTGTGCAGACCAGCACACCCACTGTAAGTCCAATAAATTCCACTGTCCAGAAAATAGGAGAGAGACTAGGTAGAAAGAAAAGGAGAAAACCACCACAAGGAGACTCATACTAACAATATTTCTAGTatagataaaaaaaaatgcaatgaTGTCCTAGATGACTAGCCAGCTCTTGACTATCAGAAAAACCTGCTATGCAGACTCAGACGTAGGTGTATTATGTGTTATTCGTCATCTTGTGTGTTTTGTCAAATCAACATTTGTGCCACTATTCAACAGGAATTGTAACAAGTGCATGAAAGATCAGGATAATGTTTTGTAATAATGtatatgcatttaaacacaaatTATTAATAAAATATTGGAAAGAAGCATATATTGAGTGCAATGAATTCTAAAAGTGATGATTTCATTAATAACACATTCCCTTTTgtacatgtatactgtatactgcatatactgtactgtactcccaAGACAGCAGGGAATATTTAATAAGGAAGAAATGAAAGAATTCCAAGTTCAGGGAGTTTGCCATTTCATCTGCTTACCCGTAAACTGCTTACTTGTACTTTTCTGCAAACAATGCTTGccatactgtatacacagacAGGCTCCAAGCCAAGAAAGCTGAGCCTTCTTCCAGGTTTAAATACTATTTCCTTTGTTCTGTGTGGGACTTTGGACCTCTAGTCTCTTCCAATGCGATATAAGGCATTTTGATGAAAGGGGTCACATTCTTCAAAAAGGATTACGTGCTCACTGTGAACTCTATTCTCCCCACCTAAATTAGGGTTGTAAAGAGCCTGTAACACTGAGGCTCAAATCCCTCAGCTGATTCTCACATGCTACTCTGAGGAGTGTTACAGAATGAGATTGACATATTATACTGTAGCTTACTTTAGAAAGTACAGACACATATGTTTAGAATAACTTCTGTAATTATGTCCAGCAGTTTATGGAAGGGGCACATCCTTTTTTTGGTATTTCCCACTTAAAGAAAATGAACATAAACAGCGTTAGGCTTTCAAACATGCCATTTCTGTTTCTGTTGTTTGTTTCTTGTCTGTTGTTTCTTGATTTAATTGAGCTAATTTACAATAAATTGCCAGGATATGTTACAGACTGAAAACACCAGCTAGGGTAATAGTAAAACTGTTGGAGACTTCAGGAAGCAGTGACTGGTTTTCAAAGTTTAATAACAAAGGGGACTTTGATGCTACTGATGGTGTTCCAGACTGGGACTAGA

Function

NR:

description
mucin-5AC-like

GO: NA

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582539.2 True 3962 mRNA 0.45 4 18037588 18042701

Neighbor

gene id symbol gene type direction distance location
ca4 ca4 coding downstream 37959 17989229 ~ 17999629 (-)
LOC110503905 LOC106612802 coding downstream 64398 17963258 ~ 18015869 (-)
LOC110503460 NA coding downstream 110654 17923724 ~ 17926934 (-)
wu:fc27b11 NA coding downstream 178192 17855290 ~ 17859396 (-)
LOC118944000 LOC106612753 coding downstream 187159 17849473 ~ 17850429 (-)
LOC110503908 LOC106612797 coding upstream 19296 18061997 ~ 18069560 (-)
LOC110503909 LOC106612796 coding upstream 32515 18075216 ~ 18081425 (-)
LOC110503920 LOC106612791 coding upstream 269238 18311939 ~ 18355479 (-)
LOC110503921 LOC106612790 coding upstream 320394 18363095 ~ 18383190 (-)
LOC110503924 LOC107554284 coding upstream 389767 18432024 ~ 18434798 (-)
G1909024 NA non-coding downstream 30238 18001233 ~ 18007350 (-)
G1908999 NA non-coding downstream 89538 17937713 ~ 17948050 (-)
G1908996 NA non-coding downstream 103007 17933975 ~ 17934581 (-)
G1908932 NA non-coding downstream 183482 17847931 ~ 17854106 (-)
G1909345 NA non-coding upstream 9153 18051854 ~ 18052194 (-)
G1909357 NA non-coding upstream 43346 18086047 ~ 18086265 (-)
G1909407 NA non-coding upstream 123170 18165871 ~ 18166177 (-)
G1909408 NA non-coding upstream 127468 18170169 ~ 18170403 (-)
G1909461 NA non-coding upstream 210686 18253387 ~ 18253697 (-)
LOC118944080 LOC106612823 other downstream 759178 17277554 ~ 17278524 (-)
G1907951 NA other downstream 1876362 16158846 ~ 16161226 (-)
G1907922 NA other downstream 1905026 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 1993283 16036987 ~ 16044740 (-)
G1906218 NA other downstream 2524495 15512359 ~ 15513093 (-)
LOC110503944 LOC106612932 other upstream 925361 18968062 ~ 19185772 (-)
G1910398 NA other upstream 1117748 19160449 ~ 19162158 (-)
G1910539 NA other upstream 1290140 19332841 ~ 19333225 (-)
G1910651 NA other upstream 1448016 19490717 ~ 19491608 (-)

Expression


Co-expression Network