LOC110503909 (LOC106612796)


Basic Information

Item Value
gene id LOC110503909
gene name LOC106612796
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 18075216 ~ 18081425 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582545.2
CCACTCCCCCTTCCCTCTAGTCACAGTCAGACACGAACAGACTGGTTGAGTGGCAACACACTACGAGAGGGGGAACAAATCTGTGGAATTGGAATGAGCTGTTTAAGGGAGCCCTAGCTTGCCTCCCTCTGAGCCTAGGAAGTGTGAAACGTGAGACAAGCTGCACCTATTCTCTGTGAGTAGTTCTGAAAGCACAAGGGGGAAATACCATATCTAGAACATTGACTCCCTTCAAACACCTGGAGCTGTGACTGTCCTGAGGAGAAATCTCCCCTCACACGTACTCGCCAACGGACGACCGTGGAGGTGTTAGAAGAGCCGTGGCGATAAGCAGCTGACGTGAAACAAACGAAGAACAAGGAAGAAGagagtaaaaagagagagagggataggagaagAAAATGGAGGCCTTGCTTCCTGTGTTGCAGCGGCACCCTGgactgtctgtgttggtgtgcGCTCTGATGTTCCGGGTGGCCCACCGACTACTACAGAACCTGCCTGTTCCCAAAGTGGTGGCAGTGGATGACTTCCGCTCCTGGAAGTGGAGGAACCTCTCGGTCTCTATGGTTCACTCTCTCCTGACAGGGACTTGGGCTGTGACCTGTGTATTTATCTGGCCTGAGATGGCAACCAACATTCACTCCTTCTACACGGCCCCAGCCTACATACTCATCTGCATCTCATCAGGATACTTTGTTCAGGATGCAGGTGACATCATCCTAACTGGACACGCAAGAGGATCCTGGGAGTTCTTAATTCATCATGTCCTGGTGCTCTGGTGCTTCCTGTATTCTCTGTACTCGCACCTCTACGTGGCCGGTGCTGTGGTGGCTCTCTTTGTGGAGGTTAACAGTGTCACCTTGCATTTGAGGCTAATGCTGAAGCTAGCATCGCAGCAGTCGTCCCCTCTGTACCAAATCAACAAGTTCCTCAACGTCTTCACATATGTCGTCTTCCGCCTCAGCGCACAGTTCTACCTCACGTATTACATCGTCCAGAACTACTCCTGGATGGACAAAGGAGGCTACTTCCTCATTACCATGACCCTCATGAACACCATGATCCTGATCTACTTTTATCGTCTTCTCCGTGCCGACTTCTTCCCCCGGAGCAGGCCTAGCATGGCGCTAAATGGCACCCATTACAACAACGTCAAAAAGTTCCTCACTGACTGACACCGAGAGCGAGATGGCTGTAAACTGACGGTTGTGTTTGCCTTTTGTTTTGTTCGCTTACTGATATCATTCCTCATCAAGACGTCTCATCTGGTTGCATTGTCAAGCTGTGTCTTCACAACAACAACCATAACAGAGCTCTGTCTCTCAACAGCTCGTGTTGTAGTGAGAGGCAGCCAGGAAAGGATGGGGACAGTGGTACATTCACTATAGTGATGCTTCTCTACTGATGATTATGCCCACTGTGGCTGAAGATCTCTCACAGACACCCAAACAGGGCAGCATAGAGTTAGAGACTGGTCCATTCACACTGGCTGGGAGAATCCTACTAACTTACCTCCAGGATACTGTGCCACTTTTGCTTCTGATCATGGCTAATACATTCTTATATTTTAAATAACTGTATGTGATTCATGTGGAATGCTCTTTAACAGAAAAAATACTTATACATTTTAAACATAATTTTgtgaatatatacagtagagaaacAAACTGCCAAAGATATATCAGGCATCACCTTGGTGTTGTACATCCCACCCCACAAACTCTGTCAGCTGTAGCTTAGCAACATAGTTTTATTGAAATTTCCACTAATAGGATTTAGTTATATATACTATTCATAACTATAGTACAGTCAATATTCTTGACATTGTAACAAACTTTCATTCTTCCCTGCTTGGTCTCAACAGGTCAACACCAATACGTGGGTGACCAGCATTCTTACAACAGCGACCATTCATTCCATAAATCCAACATAGTGAAATGCATGTATCCCATTGAAAGTAGCTGAATGTACGACCAGGTCTACATTTTCTTGAGGTTACAAGAATCACTTATATTTATCTTTGAATTATTTATCAAAGTGAACCAAACCAAAACAGACAGGTCCAGAGGATGGGTTAGCAATGGGTTTTGGTAAGTTATAGTAGTGCCTATACCACAGTTCCTTCTCAACAACCTTCCCTAGATAGCCCTTACAGTATGTTTATAGATGCAGTGTTGGAGAAGACACCAATTACTTCACATTAGAAGAAGTTAAGGTAgactaaagctacccttaagtACATTTTTCATGAAGTAGTTTAGATGAAGTTATGTAAATTTGAAATGCCATAGACtctacaaattgcaagaacagattATCACTTTGGGGTCATATGGTAACAAAGAGTAATTTAACATTAAACGCAACCATGTTTCAAGTGTGAATGAGGCAGGTCTGATTCTGAAAAAGAAAGTAAATGATTGGTGAAGTAGGCAATCTTATATTTTTGCAAATAAAAGTAGTATATAGTTCCagtagaagtcggaagtttacaccttagccaaatacatttaaactcggtttttcaccatttctgacatttaatcgtagtaaaacttccctgtcttaggtcagttagattcaccactttattttaagaatg

Function

NR:

description
calfacilitin-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582545.2 True 2605 mRNA 0.44 4 18075216 18081425

Neighbor

gene id symbol gene type direction distance location
LOC110503908 LOC106612797 coding downstream 5656 18061997 ~ 18069560 (-)
LOC110503907 LOC106612799 coding downstream 32515 18037588 ~ 18042701 (-)
ca4 ca4 coding downstream 75587 17989229 ~ 17999629 (-)
LOC110503905 LOC106612802 coding downstream 102026 17963258 ~ 18015869 (-)
LOC110503460 NA coding downstream 148282 17923724 ~ 17926934 (-)
LOC110503920 LOC106612791 coding upstream 230514 18311939 ~ 18355479 (-)
LOC110503921 LOC106612790 coding upstream 281670 18363095 ~ 18383190 (-)
LOC110503924 LOC107554284 coding upstream 351043 18432024 ~ 18434798 (-)
LOC110503923 LOC106612789 coding upstream 356113 18437538 ~ 18447553 (-)
LOC110503925 LOC106612788 coding upstream 369249 18450674 ~ 18455598 (-)
G1909345 NA non-coding downstream 23022 18051854 ~ 18052194 (-)
G1909024 NA non-coding downstream 67866 18001233 ~ 18007350 (-)
G1908999 NA non-coding downstream 127166 17937713 ~ 17948050 (-)
G1908996 NA non-coding downstream 140635 17933975 ~ 17934581 (-)
G1909357 NA non-coding upstream 4622 18086047 ~ 18086265 (-)
G1909407 NA non-coding upstream 84446 18165871 ~ 18166177 (-)
G1909408 NA non-coding upstream 88744 18170169 ~ 18170403 (-)
G1909461 NA non-coding upstream 171962 18253387 ~ 18253697 (-)
G1909465 NA non-coding upstream 175464 18256889 ~ 18258930 (-)
LOC118944080 LOC106612823 other downstream 796806 17277554 ~ 17278524 (-)
G1907951 NA other downstream 1913990 16158846 ~ 16161226 (-)
G1907922 NA other downstream 1942654 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 2030911 16036987 ~ 16044740 (-)
G1906218 NA other downstream 2562123 15512359 ~ 15513093 (-)
LOC110503944 LOC106612932 other upstream 886637 18968062 ~ 19185772 (-)
G1910398 NA other upstream 1079024 19160449 ~ 19162158 (-)
G1910539 NA other upstream 1251416 19332841 ~ 19333225 (-)
G1910651 NA other upstream 1409292 19490717 ~ 19491608 (-)

Expression


Co-expression Network