LOC110503924 (LOC107554284)


Basic Information

Item Value
gene id LOC110503924
gene name LOC107554284
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 18432024 ~ 18434798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582576.2
AGAAGAGGTGGCAGCGCAGCCAATCGCAGTGTAAGTGGCGTAGGGCAGCGTGTTAGGGCGGGGGAGGTATTTTGCAGGGCAGTTTCCCACATTTGCTTTGCGTAAAGCTTATAAAATAATTTGTCGCAGCACGATCTAGCAAGTAAACAAAGCTTTATATCCATCAAGGTGAGTTACCTGATCGCGAAGTGGAAAGTAGCTTAATCTCCTACACAAGGCATCATGACTGACAGGAAGGCAGTAATCAAGAATGCTGACATGTCAGAGGACATGCAGCAGGATGCAGTGGACTGTGCTACCCAGGCCATGGAGAAGTACAATATAGAGAAAGACATTGCGGCCTACATAAAGAAGGAATTTGACAAGAAGTATAACCCAACATGGCATTGCATTGTTGGGAGGAACTTCGGCAGCTACGTCACTCATGAGACAAAGCATTTCATCTACTTCTATTTGGGGCAGGTGGCCATCCTCCTCTTCAAGTCTGGCTGAGTTCTGTGAGGCCTGGAGTGCCTCTCCTCCCAACCTGGACTGTAATGCACTGGTGGCTGATGTCACAACTTCCCACACACTTCAAATATTAAAATGAAAACATACCATGATGATACACAACTGGCTGTGCGCAACTGCATGGACTGAGATGTACCATATTTAATGTGTATATGTTACAGTACAAATACTACTTTCACTAGTTGCCATAAAATGCAACTGGAAGAGATTTTTGTTAATGctgttctacattttgttataCTTAAGTTGTAAATGCTTTAACAGTGGCCTTTGATTGTATAATAAAGGAAAGCTAGAGAATGTAGTCGTGCATCTGCTTTACCCCAGAGAGCTGTTTTGTTTTGTGACTCCTGTGCTACTGTTTGAATGTGCTGAGTTGCTCCAGACCTTGAACTACTACAGCAGTTTGATGCCTGTATATTGCCAAAGGTACAAGTGAGACTAGCACAATCTATTTGGACACATCTTCCCAGATTTGCAATTGCTGTTATCGATCCCATTTCCCAGTCATATCTCATTGGTGTAATGTCTCATCTGGCATAGTGAGGGTGTTGGCAATGTCCTATTGCTAGTTGAGTTCCTATGTTAACATGCAGATGTTTTTAGAATGGTGGCTTGGTGGTTCCATTTGCAGAGGGACACCATCCATACTTGAACCTATTCTGTCTGTGCAACAAAGGACTCAATGTTGGCATTCAGGTCCTTTTGTAGACTT
>XM_036961188.1
AGCTGGTAGAAAATGCTCGCAACACAAGAAGAGGTGGCAGCGCAGCCAATCGCAGTGTAAGTGGCGTAGGGCAGCGTGTTAGGGCGGGGGAGGTATTTTGCAGGGCAGTTTCCCACATTTGCTTTGCGTAAAGCTTATAAAATAATTTGTCGCAGCACGATCTAGCAAGTAAACAAAGCTTTATATCCATCAAGGCATCATGACTGACAGGAAGGCAGTAATCAAGAATGCTGACATGTCAGAGGACATGCAGCAGGATGCAGTGGACTGTGCTACCCAGGCCATGGAGAAGTACAATATAGAGAAAGACATTGCGGCCTACATAAAGAAGGAATTTGACAAGAAGTATAACCCAACATGGCATTGCATTGTTGGGAGGAACTTCGGCAGCTACGTCACTCATGAGACAAAGCATTTCATCTACTTCTATTTGGGGCAGGTGGCCATCCTCCTCTTCAAGTCTGGCTGAGTTCTGTGAGGCCTGGAGTGCCTCTCCTCCCAACCTGGACTGTAATGCACTGGTGGCTGATGTCACAACTTCCCACACACTTCAAATATTAAAATGAAAACATACCATGATGATACACAACTGGCTGTGCGCAACTGCATGGACTGAGATGTACCATATTTAATGTGTATATGTTACAGTACAAATACTACTTTCACTAGTTGCCATAAAATGCAACTGGAAGAGATTTTTGTTAATGctgttctacattttgttataCTTAAGTTGTAAATGCTTTAACAGTGGCCTTTGATTGTATAATAAAGGAAAGCTAGAGAATGTAGTCGTGCATCTGCTTTACCCCAGAGAGCTGTTTTGTTTTGTGACTCCTGTGCTACTGTTTGAATGTGCTGAGTTGCTCCAGACCTTGAACTACTACAGCAGTTTGATGCCTGTATATTGCCAAAGGTACAAGTGAGACTAGCACAATCTATTTGGACACATCTTCCCAGATTTGCAATTGCTGTTATCGATCCCATTTCCCAGTCATATCTCATTGGTGTAATGTCTCATCTGGCATAGTGAGGGTGTTGGCAATGTCCTATTGCTAGTTGAGTTCCTATGTTAACATGCAGATGTTTTTAGAATGGTGGCTTGGTGGTTCCATTTGCAGAGGGACACCATCCATACTTGAACCTATTCTGTCTGTGCAACAAAGGACTCAATGTTGGCATTCAGGTCCTTTTGTAGACTT
>TU2183897
TAGAAAATGCTCGCAACACAAGAAGAGGTGGCAGCGCAGCCAATCGCAGTGTAAGTGGCGTAGGGCAGCGTGTTAGGGCGGGGGAGGTATTTTGCAGGGCAGTTTCCCACATTTGCTTTGCGTAAAGCTTATAAAATAATTTGTCGCAGCACGATCTAGCAAGTAAACAAAGCTTTATATCCATCAAGGTGAGTTACCTGATCGCGAAGTGGAAAGTAGCTTAATCTCCTACACAAGGCATCATGACTGACAGGAAGGCAGTAATCAAGAATGCTGACATGTCAGAGGACATGCAGCAGGATGCAGTGGACTGTGCTACCCAGGCCATGGAGAAGTACAATATAGAGAAAGACATTGCGGCCTACATAAAGAAGGAATTTGACAAGAAGTATAACCCAACATGGCATTGCATTGTTGGGAGGAACTTCGGCAGCTACGTCACTCATGAGACAAAGCATTTCATCTACTTCTATTTGGGGCAGGTGGCCATCCTCCTCTTCAAGTCTGGCTGAGTTCTGTGAGGCCTGGAGTGCCTCTCCTCCCAACCTGGACTGTAATGCACTGGTGGCTGATGTCACAACTTCCCACACACTTCAAATATTAAAATGAAAACATACCATGATGATACACAACTGGCTGTGCGCAACTGCATGGACTGAGATGTACCATATTTAATGTGTATATGTTACAGTACAAATACTACTTTCACTAGTTGCCATAAAATGCAACTGGAAGAGATTTTTGTTAATGctgttctacattttgttataCTTAAGTTGTAAATGCTTTAACAGTGGCCTTTGATTGTATAATAAAGGAAAGCTAGAGAATGTAGTCGTGCATCTGCTTTACCCCAGAGAGCTGTTTTGTTTTGTGACTCCTGTGCTACTGTTTGAATGTGCTGAGTTGCTCCAGACCTTGAACTACTACAGCAGTTTGATGCCTGTATATTGCCAAAGGTACAAGTGAGACTAGCACAATCTATTTGGACACATCTTCCCAGATTTGCAATTGCTGTTATCGATCCCATTTCCCAGTCATATCTCATTGGTGTAATGTCTCATCTGGCATAGTGAGGGTGTTGGCAATGTCCTATTGCTAGTTGAGTTCCTATGTTAACATGCAGATGTTTTTAGAATGGTGGCTTGGTGGTTCCATTTGCAGAGGGACACCATCCATACTTGAACCTATTCTGTCTGTGCAACAAAGGACTCAATGTTGGCATTCAGGTCCTTTTGTAGACTTGCATATCTTAGTGACTTAACTGTCTGCTTTGTTGGTAGTTTCAAGTCTGTCTATGGTTTGATGCACATTTATATATGCTTTGCACAGGCATACCTCTTCTCTCTGCATGGGAGTACAACTGCACTTCACTGAAGGAATAATTGGgtttttggcaatgaggcccttttaTCTACATCCTCAGCCGACTGTGTGGAATCATTTGTTGAACAAGTACGAAGGAAGTTGGAGATCGTTTGGCAAGCAAACGCTAATTAGTGTTGGTGCAATCAATGGAAGTTGCTAGTAAATACCATACACTTCCAAACATTGCTTTAACGCATCTAAATTACATCTAGGAGTTCTGACTCTAGGGAATTAAACGAAGGGCCTCtgacaaaatcccaaagtatccctgtAAAGGTGCCCAGTAGAGTTTAACTTTAATTTAGTCAATAAAATGTTTAA
>TU2183901
TAGAAAATGCTCGCAACACAAGAAGAGGTGGCAGCGCAGCCAATCGCAGTGTAAGTGGCGTAGGGCAGCGTGTTAGGGCGGGGGAGGTATTTTGCAGGGCAGTTTCCCACATTTGCTTTGCGTAAAGCTTATAAAATAATTTGTCGCAGCACGATCTAGCAAGTAAACAAAGCTTTATATCCATCAAGGCATCATGACTGACAGGAAGGCAGTAATCAAGAATGCTGACATGTCAGAGGACATGCAGCAGGATGCAGTGGACTGTGCTACCCAGGCCATGGAGAAGTACAATATAGAGAAAGACATTGCGGCCTACATAAAGAAGGAATTTGACAAGAAGTATAACCCAACATGGCATTGCATTGTTGGGAGGAACTTCGGCAGCTACGTCACTCATGAGACAAAGCATTTCATCTACTTCTATTTGGGGCAGGTGGCCATCCTCCTCTTCAAGTCTGGCTGAGTTCTGTGAGGCCTGGAGTGCCTCTCCTCCCAACCTGGACTGTAATGCACTGGTGGCTGATGTCACAACTTCCCACACACTTCAAATATTAAAATGAAAACATACCATGATGATACACAACTGGCTGTGCGCAACTGCATGGACTGAGATGTACCATATTTAATGTGTATATGTTACAGTACAAATACTACTTTCACTAGTTGCCATAAAATGCAACTGGAAGAGATTTTTGTTAATGctgttctacattttgttataCTTAAGTTGTAAATGCTTTAACAGTGGCCTTTGATTGTATAATAAAGGAAAGCTAGAGAATGTAGTCGTGCATCTGCTTTACCCCAGAGAGCTGTTTTGTTTTGTGACTCCTGTGCTACTGTTTGAATGTGCTGAGTTGCTCCAGACCTTGAACTACTACAGCAGTTTGATGCCTGTATATTGCCAAAGGTACAAGTGAGACTAGCACAATCTATTTGGACACATCTTCCCAGATTTGCAATTGCTGTTATCGATCCCATTTCCCAGTCATATCTCATTGGTGTAATGTCTCATCTGGCATAGTGAGGGTGTTGGCAATGTCCTATTGCTAGTTGAGTTCCTATGTTAACATGCAGATGTTTTTAGAATGGTGGCTTGGTGGTTCCATTTGCAGAGGGACACCATCCATACTTGAACCTATTCTGTCTGTGCAACAAAGGACTCAATGTTGGCATTCAGGTCCTTTTGTAGACTTGCATATCTTAGTGACTTAACTGTCTGCTTTGTTGGTAGTTTCAAGTCTGTCTATGGTTTGATGCACATTTATATATGCTTTGCACAGGCATACCTCTTCTCTCTGCATGGGAGTACAACTGCACTTCACTGAAGGAATAATTGGgtttttggcaatgaggcccttttaTCTACATCCTCAGCCGACTGTGTGGAATCATTTGTTGAACAAGTACGAAGGAAGTTGGAGATCGTTTGGCAAGCAAACGCTAATTAGTGTTGGTGCAATCAATGGAAGTTGCTAGTAAATACCATACACTTCCAAACATTGCTTTAACGCATCTAAATTACATCTAGGAGTTCTGACTCTAGGGAATTAAACGAAGGGCCTCtgacaaaatcccaaagtatccctgtAAAGGTGCCCAGTAGAGTTTAACTTTAATTTAGTCAATAAAATGTTTAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0005875 microtubule associated complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043186 P granule cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582576.2 False 1225 mRNA 0.43 3 18432468 18434772
XM_036961188.1 False 1202 mRNA 0.43 3 18432468 18434798
TU2183897 False 1689 TUCP 0.42 3 18432024 18434792
TU2183901 True 1640 TUCP 0.42 3 18432024 18434792

Neighbor

gene id symbol gene type direction distance location
LOC110503921 LOC106612790 coding downstream 49278 18363095 ~ 18383190 (-)
LOC110503920 LOC106612791 coding downstream 76989 18311939 ~ 18355479 (-)
LOC110503909 LOC106612796 coding downstream 351043 18075216 ~ 18081425 (-)
LOC110503908 LOC106612797 coding downstream 362908 18061997 ~ 18069560 (-)
LOC110503907 LOC106612799 coding downstream 389767 18037588 ~ 18042701 (-)
LOC110503923 LOC106612789 coding upstream 2740 18437538 ~ 18447553 (-)
LOC110503925 LOC106612788 coding upstream 15876 18450674 ~ 18455598 (-)
LOC110503926 LOC106612787 coding upstream 19193 18453991 ~ 18465242 (-)
LOC110503927 kiaa0100 coding upstream 30601 18465399 ~ 18494798 (-)
LOC110503930 LOC106612786 coding upstream 60470 18495268 ~ 18501115 (-)
G1909483 NA non-coding downstream 21439 18326648 ~ 18411029 (-)
G1909484 NA non-coding downstream 121982 18309787 ~ 18310486 (-)
G1909496 NA non-coding downstream 143924 18286714 ~ 18288544 (-)
G1909495 NA non-coding downstream 146293 18283361 ~ 18286175 (-)
G1909470 NA non-coding downstream 164820 18267313 ~ 18267648 (-)
G1909572 NA non-coding upstream 21738 18456536 ~ 18457218 (-)
LOC110503933 txndc17 non-coding upstream 127144 18561930 ~ 18566131 (-)
G1909868 NA non-coding upstream 239281 18674079 ~ 18674678 (-)
G1909869 NA non-coding upstream 240879 18675677 ~ 18677393 (-)
G1909902 NA non-coding upstream 305267 18740065 ~ 18740282 (-)
LOC118944080 LOC106612823 other downstream 1154058 17277554 ~ 17278524 (-)
G1907951 NA other downstream 2271242 16158846 ~ 16161226 (-)
G1907922 NA other downstream 2299906 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 2388163 16036987 ~ 16044740 (-)
G1906218 NA other downstream 2919375 15512359 ~ 15513093 (-)
LOC110503944 LOC106612932 other upstream 533264 18968062 ~ 19185772 (-)
G1910398 NA other upstream 725651 19160449 ~ 19162158 (-)
G1910539 NA other upstream 898043 19332841 ~ 19333225 (-)
G1910651 NA other upstream 1055919 19490717 ~ 19491608 (-)
G1910996 NA other upstream 1256268 19691066 ~ 19691513 (-)

Expression


Co-expression Network