LOC110503923 (LOC106612789)


Basic Information

Item Value
gene id LOC110503923
gene name LOC106612789
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 18437538 ~ 18447553 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582575.2
GGCGGACGTAGCCATTTCTAGTTCTCTACTGGGCACATTTCTGGTGTTCATGAATGCCCTCGCGGAGAAGCGTAGCTATCTAGTACACAACTTTAAGCGCGAGTGATACCTTATTTCGTGTTTTCAGCAGTGTTTGTGTACTATACTCAAATTAATTTCTAATCGGCGGTGATATACTTGAATACCGTCTTGCGCGAAATCGCTTTTTATTTCAACCTACCGCTAAAagaaactagctaacgttagcttgctagctaacatgtCGGGAGGCGTCGTGCGAGGCCCCGCAGGAAATAACGATTGTCGAATTTATGTCGGAAATCTACCTCCTGATATTCGCACTAAAGATGTCGAGGACGTGTTCTACAAATACGGAGCTATTCGAGACATCGATTTGAAAAATCGGAGAGGGGGACCTCCCTTTGCCTTCATCGAATTTGAAGATCCCAGGGACGCAGACGATGCAGTGTACGGACGAGACGGCTATGACTACGACGGTTATCGGCTGCGAGTTGAATTCCCTCGGAGCGGAAGGGGTGGGGGGCGAGGCGGttttggtggaggtggtggtggtggtgggggcgtTGGTGGCGCTCCTAGAGGCAGATACGGGCCGCCATCCAGACGCTCCGAGTATAGGGTCATTGTCTCAGGGCTTCCCCAGAGTGGCAGCTGGCAGGACCTCAAGGATCACATGCGTGAGGCTGGGGATGTATGTTATGCTGACGTTTTCAGAGATGGAACTGGGGTTGTGGAGTTTGTGCGCAAAGAAGACATGACCTACGCTGTTCGAAAGCTGGACAACACCAAGTTCCGATCACACGAGGTTTTGATTGGAGGAGTGGCTCAGTGGATCCCAATCCTTGGAGCCGGATCAGAGGAGCATTTAGGGAAGGGATAGGCAAGGATGGATGCTTGGAGCCGGATCAGAGGAGCGTTTAGGGAAGGGATAGGCAAGAATGGATGCTTGGAGCGGGATCCATTTTCCAGGAATCAAATCAATTGAACTAATTAAGGAATCCTAGATGCAACTTTTTGAATGGCCCAGTTTATTTCAATTTTTGAGCGGTAAATATGCGCAGAGTCAAAGGATATGGATAAGGATTATTTACGTTTTTGGCGTAAGAAAAGGAAACTGAGGACCAGGAAGTTGGATCAAAGAATGGAAGGAGACGTAAAAGTCTGGTAAATAAGGGATTAAAATTTGTGATGGTTGGGgtttatatttagtatagttagTCTGTCTTTCTTCAATTTAATTTACTCTTAGTTTAGCATTTTCAATAAAATCCTGAAAAGACGTA
>XM_021582573.2
GGCGGACGTAGCCATTTCTAGTTCTCTACTGGGCACATTTCTGGTGTTCATGAATGCCCTCGCGGAGAAGCGTAGCTATCTAGTACACAACTTTAAGCGCGAGTGATACCTTATTTCGTGTTTTCAGCAGTGTTTGTGTACTATACTCAAATTAATTTCTAATCGGCGGTGATATACTTGAATACCGTCTTGCGCGAAATCGCTTTTTATTTCAACCTACCGCTAAAagaaactagctaacgttagcttgctagctaacatgtCGGGAGGCGTCGTGCGAGGCCCCGCAGGAAATAACGATTGTCGAATTTATGTCGGAAATCTACCTCCTGATATTCGCACTAAAGATGTCGAGGACGTGTTCTACAAATACGGAGCTATTCGAGACATCGATTTGAAAAATCGGAGAGGGGGACCTCCCTTTGCCTTCATCGAATTTGAAGATCCCAGGGACGCAGACGATGCAGTGTACGGACGAGACGGCTATGACTACGACGGTTATCGGCTGCGAGTTGAATTCCCTCGGAGCGGAAGGGGTGGGGGGCGAGGCGGttttggtggaggtggtggtggtggtgggggcgtTGGTGGCGCTCCTAGAGGCAGATACGGGCCGCCATCCAGACGCTCCGAGTATAGGGTCATTGTCTCAGGGCTTCCCCAGAGTGGCAGCTGGCAGGACCTCAAGGATCACATGCGTGAGGCTGGGGATGTATGTTATGCTGACGTTTTCAGAGATGGAACTGGGGTTGTGGAGTTTGTGCGCAAAGAAGACATGACCTACGCTGTTCGAAAGCTGGACAACACCAAGTTCCGATCACACGAGGGAGAGACCGCATACGTTCGCGTGAAAGTAGATGGTCCCCGCAGCCCGAGCTATGGAAGATCCCGTTCCAGGAGCCGCAGTCGAAGCAGGAGCCGCAGCGCAGCCAGTCGCAGCCGCAGCAACTCTCGCGGTGGTGGTACCCGTGGTGGCAGAGGATCTCCTCGCTACTCTCCACGCCATAGCCGCTCTCGCTCCCGTTCCTAAACTCTGTTGCCATTTTGGTAGATACCGTGTTAGCAGTTCCTCTTTCCACTTGTTTTTACCTCCTTTTGAGTTTTTCAGAAGTCAACTATAGATTAAAATTTTTGCATTCCATCTCCTGATGTCCTAGTGGAAGGTCTTGGTATGTAGGTGTATCCCCTCCTGTCACCTTTCCTCCCTAACCCTCCCTACTTTAGTCTTTTTGATCTCCTTTCTCAATTCATTTTAATTGACCTGTTGTCTTTCCTCCAAAAATGTTGCAACATTTGAAACCCTATTGCTCTGAACTTCAAAAATGTTGATCTTATTAACAAGTTCAATATTTTTGTAAGTGTTGGAAAATGTATGTACTTTTTCATGAGATGGCGGGAGTCTCATTGCTAAACTGTATTTTACCCTTGTGTCTTCCTTTAGACATCTGAAGATAAGGATTAAAGAGTGATTTGGAATAAAAGTTGTGGAGCACATTTCATTTGTTTGATCAGGATAGGACATCTTAGGAGGAGTCAGGTCGAGGCAATGGTTTTGATTGGAGGAGTGGCTCAGTGGATCCCAATCCTTGGAGCCGGATCAGAGGAGCATTTAGGGAAGGGATAGGCAAGGATGGATGCTTGGAGCCGGATCAGAGGAGCGTTTAGGGAAGGGATAGGCAAGAATGGATGCTTGGAGCGGGATCCATTTTCCAGGAATCAAATCAATTGAACTAATTAAGGAATCCTAGATGCAACTTTTTGAATGGCCCAGTTTATTTCAATTTTTGAGCGGTAAATATGCGCAGAGTCAAAGGATATGGATAAGGATTATTTACGTTTTTGGCGTAAGAAAAGGAAACTGAGGACCAGGAAGTTGGATCAAAGAATGGAAGGAGACGTAAAAGTCTGGTAAATAAGGGATTAAAATTTGTGATGGTTGGGgtttatatttagtatagttagTCTGTCTTTCTTCAATTTAATTTACTCTTAGTTTAGCATTTTCAATAAAATCCTGAAAAGACG

Function

NR:

description
PREDICTED: serine/arginine-rich splicing factor 1B-like

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12890 SRSF1, SFRS1, ASF, SF2; serine/arginine-rich splicing factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582575.2 False 1304 mRNA 0.47 4 18437538 18447553
XM_021582573.2 True 2025 mRNA 0.46 5 18437540 18447553

Neighbor

gene id symbol gene type direction distance location
LOC110503924 LOC107554284 coding downstream 2740 18432024 ~ 18434798 (-)
LOC110503921 LOC106612790 coding downstream 54348 18363095 ~ 18383190 (-)
LOC110503920 LOC106612791 coding downstream 82059 18311939 ~ 18355479 (-)
LOC110503909 LOC106612796 coding downstream 356113 18075216 ~ 18081425 (-)
LOC110503908 LOC106612797 coding downstream 367978 18061997 ~ 18069560 (-)
LOC110503925 LOC106612788 coding upstream 3121 18450674 ~ 18455598 (-)
LOC110503926 LOC106612787 coding upstream 6438 18453991 ~ 18465242 (-)
LOC110503927 kiaa0100 coding upstream 17846 18465399 ~ 18494798 (-)
LOC110503930 LOC106612786 coding upstream 47715 18495268 ~ 18501115 (-)
LOC110503929 LOC106612785 coding upstream 56523 18504076 ~ 18561364 (-)
G1909483 NA non-coding downstream 26509 18326648 ~ 18411029 (-)
G1909484 NA non-coding downstream 127052 18309787 ~ 18310486 (-)
G1909496 NA non-coding downstream 148994 18286714 ~ 18288544 (-)
G1909495 NA non-coding downstream 151363 18283361 ~ 18286175 (-)
G1909470 NA non-coding downstream 169890 18267313 ~ 18267648 (-)
G1909572 NA non-coding upstream 8983 18456536 ~ 18457218 (-)
LOC110503933 txndc17 non-coding upstream 114389 18561930 ~ 18566131 (-)
G1909868 NA non-coding upstream 226526 18674079 ~ 18674678 (-)
G1909869 NA non-coding upstream 228124 18675677 ~ 18677393 (-)
G1909902 NA non-coding upstream 292512 18740065 ~ 18740282 (-)
LOC118944080 LOC106612823 other downstream 1159128 17277554 ~ 17278524 (-)
G1907951 NA other downstream 2276312 16158846 ~ 16161226 (-)
G1907922 NA other downstream 2304976 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 2393233 16036987 ~ 16044740 (-)
LOC110503944 LOC106612932 other upstream 520509 18968062 ~ 19185772 (-)
G1910398 NA other upstream 712896 19160449 ~ 19162158 (-)
G1910539 NA other upstream 885288 19332841 ~ 19333225 (-)
G1910651 NA other upstream 1043164 19490717 ~ 19491608 (-)
G1910996 NA other upstream 1243513 19691066 ~ 19691513 (-)

Expression


Co-expression Network