LOC110503929 (LOC106612785)


Basic Information

Item Value
gene id LOC110503929
gene name LOC106612785
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 18504076 ~ 18561364 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582588.2
TTTGTCTCTGACTAGAGCTCTGGGGAATTTACTTTTATCTGGAACAACATTACTCAGGGCCATTCAGTGGTGGTTTATATTGACGTTTGCTGAAACGAGAGGCAATTCGGCAAAGGACATTTTTACACATTGGGGGACTAATTGTCTTTCTCGTAAGATGAAGCTGTGGAACAAGTACAAGGTGACCAGTATTCCCTCGCTGGTGTTTGTGGACGCAGCCACAGGGAAGGTGGTGTGTCGGAATGGACTGCTGGTGGTGAGAGATGACCCCAAAGgCTTGGAGTTCCCCTGGGGGCCCAAGCCCTTTGCGGAGGTGGTGGCCGGCCCTCTGCTCAGGAACAACAGGCAGACGACAGACATCAGCTCCCTGGAGGGCCACTATGTGGGAGTGTACTTCTCAGCACACTGGTGCCCTCCATGCCGCAGTCTGACCCGTGTGCTCTTGGAATCATATCGCACTGTGAAGGAATCGGGTCAACATTTTGAGATGGTGTTTGTCAGCGCTGACCGGTCGGAGGAGTCCTTTCAGCAGTACTTCAGTGAGATGCCTTGGTTGGCAGTCCCATACTCAGACGAGGCCCGACGATCACGACTCAACAGACTCTTTGGAATACAAGgTATTCCCACCCTTATTCTGCTGGACGCGGAGGGTCACATGATCACGCGACAGGGCCGTGTGGAGGTGCTGAATGACCCAGAGTGTCGGCTCTTCCCCTGGCACCCCCGGCCTGTACTGGAGCTCAGCGAGTCTAACGCTGTGCAGCTCCACGAGGGGCCCTGCCTCGTGCTCTTTGTGGatacgGAGGAGGAGGGTGAGCTGGAGCCGGCGAAGGAGCTGATCCAGCCAATCGCAGAGAAGATCATGGCTAAGTACAAAGCCAAGGAGGAGGAGACACCACTGCTCTTCTTCGTGGCTGGAGAGGATGACATGAGTGACTCCCTGCGTGACTACACCAACCTCCCAGAGGCAGCACCCCTGCTCACCATCCTGGACATGTCTGCCCGGGCCAAGTACGTTAAGGACGTGGAGGAGATCACACCGGCCGTGGTGGAGACCTTTGTCCAAGACTTTCTGGCTGAAAAGCTCAAACCAGAGCCCATCTAGAGAGCACGGCTAGActgtcccaaatgacactatTACCtgcatagtgcactgcttttgaccaaggtttagtcctggtctaaagtagtgcactatatagggaatagggtgccatttggggaacACACCTAAACTTATGGGACTGAACCCACACCTCCATCAAACCCTGAACTCCCGGCTACCACCAGCCAGCCTCCTCTCCAGTCTCCCCCTTTTAGTCAAAGGTCTCACTTTTGACTGACATCAACTTTTTTCAGACAGGTCTTTCTCTCATGGAGTCTTCTCCTGTGGTGCCTTGCATTGACTAAAGCCCCTACAGTAATATATGAACATTCTGTTGCTTTTTGGCTCCAATAGCTTATTTGATCAGTTTCATTATTGGCATTTCTTGATACTAGAAGAAACCACACAATGTCGACCCAATGGACTTGAATTTTCACAATGTCTCTTTCTTTTGCCGAACCCTCATTGCTGGGAAAGAATAAAATGATTGCAACAAACGTTCTATAGTTGTAATTTACAAGTATGCAGTGCAGAAAATGTTCTGATCTTCCGTCTGGTGTTATTGTTCTTCTGTTTAAAAGGTGCTGCAGAGTAGTATGGCCGCTGTGCATACAGTAGACTTAACAATGTCTGATTTCCCTGTTTTAAAAGGTCATTTTGTCTGTATTTGCTTGTTTTGTATTGTGAATGGTATTTCAAATACCATGTCATGTTCTCCATGATACGAGAGAGTAGTCTTATCATAATTATGTTTCCATTTCAACCACCATGACATAAGATGATTTTCTGTGAAGATCCTCTCTATTGAAAAGGCCAGATATTTTTGAAGGCACAAAAATGGCATTTTAAAATCCATCTTAGCAACTAAGTGTATTAATTCACATTTGTCACTCCCTGGTTGTCTCTAGTCATGACTTCACAGCCATTAAAATTCACTGTTAAGCA
>XM_021582589.2
ATACCTTCTGATCACATTTCTCCAGAGGAGGCATAGGAAACCATGGTGATCAGTGAATACATGGTGTAGTGGTCAGAGAAGTGGACTGATGTACGGAGGAATGTTTATCTGGAAGGAAGATGAAGCTGTGGAACAAGTACAAGGTGACCAGTATTCCCTCGCTGGTGTTTGTGGACGCAGCCACAGGGAAGGTGGTGTGTCGGAATGGACTGCTGGTGGTGAGAGATGACCCCAAAGgCTTGGAGTTCCCCTGGGGGCCCAAGCCCTTTGCGGAGGTGGTGGCCGGCCCTCTGCTCAGGAACAACAGGCAGACGACAGACATCAGCTCCCTGGAGGGCCACTATGTGGGAGTGTACTTCTCAGCACACTGGTGCCCTCCATGCCGCAGTCTGACCCGTGTGCTCTTGGAATCATATCGCACTGTGAAGGAATCGGGTCAACATTTTGAGATGGTGTTTGTCAGCGCTGACCGGTCGGAGGAGTCCTTTCAGCAGTACTTCAGTGAGATGCCTTGGTTGGCAGTCCCATACTCAGACGAGGCCCGACGATCACGACTCAACAGACTCTTTGGAATACAAGgTATTCCCACCCTTATTCTGCTGGACGCGGAGGGTCACATGATCACGCGACAGGGCCGTGTGGAGGTGCTGAATGACCCAGAGTGTCGGCTCTTCCCCTGGCACCCCCGGCCTGTACTGGAGCTCAGCGAGTCTAACGCTGTGCAGCTCCACGAGGGGCCCTGCCTCGTGCTCTTTGTGGatacgGAGGAGGAGGGTGAGCTGGAGCCGGCGAAGGAGCTGATCCAGCCAATCGCAGAGAAGATCATGGCTAAGTACAAAGCCAAGGAGGAGGAGACACCACTGCTCTTCTTCGTGGCTGGAGAGGATGACATGAGTGACTCCCTGCGTGACTACACCAACCTCCCAGAGGCAGCACCCCTGCTCACCATCCTGGACATGTCTGCCCGGGCCAAGTACGTTAAGGACGTGGAGGAGATCACACCGGCCGTGGTGGAGACCTTTGTCCAAGACTTTCTGGCTGAAAAGCTCAAACCAGAGCCCATCTAGAGAGCACGGCTAGActgtcccaaatgacactatTACCtgcatagtgcactgcttttgaccaaggtttagtcctggtctaaagtagtgcactatatagggaatagggtgccatttggggaacACACCTAAACTTATGGGACTGAACCCACACCTCCATCAAACCCTGAACTCCCGGCTACCACCAGCCAGCCTCCTCTCCAGTCTCCCCCTTTTAGTCAAAGGTCTCACTTTTGACTGACATCAACTTTTTTCAGACAGGTCTTTCTCTCATGGAGTCTTCTCCTGTGGTGCCTTGCATTGACTAAAGCCCCTACAGTAATATATGAACATTCTGTTGCTTTTTGGCTCCAATAGCTTATTTGATCAGTTTCATTATTGGCATTTCTTGATACTAGAAGAAACCACACAATGTCGACCCAATGGACTTGAATTTTCACAATGTCTCTTTCTTTTGCCGAACCCTCATTGCTGGGAAAGAATAAAATGATTGCAACAAACGTTCTATAGTTGTAATTTACAAGTATGCAGTGCAGAAAATGTTCTGATCTTCCGTCTGGTGTTATTGTTCTTCTGTTTAAAAGGTGCTGCAGAGTAGTATGGCCGCTGTGCATACAGTAGACTTAACAATGTCTGATTTCCCTGTTTTAAAAGGTCATTTTGTCTGTATTTGCTTGTTTTGTATTGTGAATGGTATTTCAAATACCATGTCATGTTCTCCATGATACGAGAGAGTAGTCTTATCATAATTATGTTTCCATTTCAACCACCATGACATAAGATGATTTTCTGTGAAGATCCTCTCTATTGAAAAGGCCAGATATTTTTGAAGGCACAAAAATGGCATTTTAAAATCCATCTTAGCAACTAAGTGTATTAATTCACATTTGTCACTCCCTGGTTGTCTCTAGTCATGACTTCACAGCCATTAAAATTCACTGTTAAGCA
>XM_021582587.2
GCACACCACACATTGGAGCCGCTGAGCTGAGAAGCGGAAAAGGGTATCTGTCGTCGTGCACACATTTGAGCATAGGCTATACCACGAATTGGGGCTCTCCAAGGAAGCTAAATTGGAGGACGAGGGCGTGTTTGTTTTTACTGAGCCTTTCGGTTTTCATTTTCTGCAGTCTTGGTAAGAGAACGGAATATATTAGGGTCTGTTTCAAGGACTAGAGCAGAGATGTCAGAGTTTCTGGTGAATCTACTCGGGGAGCGGCTCGTCAACAGCGAGACAGCCGAGGTGGATGTACAGGCGCTGGGCAGCAAGCTGTCCCTGGTCGGGCTCTACTTCGGCTGCAGTTTAAACGGCCCCTGTAAGCAGTTCAACGCCAGTCTGTGTGAGTTTTATAGCAAGTTCAAAAAATCATCTGAACATAAAGACACATTGGAAATCGTCTTCGTCTCATCTGATCAGGACCAGAAACATTGGCAAGACTTTTTACAGGAGATGCAATGGCCGGCATTGCCTTTCAAAGATAGACACAAAAAGATGAAGCTGTGGAACAAGTACAAGGTGACCAGTATTCCCTCGCTGGTGTTTGTGGACGCAGCCACAGGGAAGGTGGTGTGTCGGAATGGACTGCTGGTGGTGAGAGATGACCCCAAAGgCTTGGAGTTCCCCTGGGGGCCCAAGCCCTTTGCGGAGGTGGTGGCCGGCCCTCTGCTCAGGAACAACAGGCAGACGACAGACATCAGCTCCCTGGAGGGCCACTATGTGGGAGTGTACTTCTCAGCACACTGGTGCCCTCCATGCCGCAGTCTGACCCGTGTGCTCTTGGAATCATATCGCACTGTGAAGGAATCGGGTCAACATTTTGAGATGGTGTTTGTCAGCGCTGACCGGTCGGAGGAGTCCTTTCAGCAGTACTTCAGTGAGATGCCTTGGTTGGCAGTCCCATACTCAGACGAGGCCCGACGATCACGACTCAACAGACTCTTTGGAATACAAGgTATTCCCACCCTTATTCTGCTGGACGCGGAGGGTCACATGATCACGCGACAGGGCCGTGTGGAGGTGCTGAATGACCCAGAGTGTCGGCTCTTCCCCTGGCACCCCCGGCCTGTACTGGAGCTCAGCGAGTCTAACGCTGTGCAGCTCCACGAGGGGCCCTGCCTCGTGCTCTTTGTGGatacgGAGGAGGAGGGTGAGCTGGAGCCGGCGAAGGAGCTGATCCAGCCAATCGCAGAGAAGATCATGGCTAAGTACAAAGCCAAGGAGGAGGAGACACCACTGCTCTTCTTCGTGGCTGGAGAGGATGACATGAGTGACTCCCTGCGTGACTACACCAACCTCCCAGAGGCAGCACCCCTGCTCACCATCCTGGACATGTCTGCCCGGGCCAAGTACGTTAAGGACGTGGAGGAGATCACACCGGCCGTGGTGGAGACCTTTGTCCAAGACTTTCTGGCTGAAAAGCTCAAACCAGAGCCCATCTAGAGAGCACGGCTAGActgtcccaaatgacactatTACCtgcatagtgcactgcttttgaccaaggtttagtcctggtctaaagtagtgcactatatagggaatagggtgccatttggggaacACACCTAAACTTATGGGACTGAACCCACACCTCCATCAAACCCTGAACTCCCGGCTACCACCAGCCAGCCTCCTCTCCAGTCTCCCCCTTTTAGTCAAAGGTCTCACTTTTGACTGACATCAACTTTTTTCAGACAGGTCTTTCTCTCATGGAGTCTTCTCCTGTGGTGCCTTGCATTGACTAAAGCCCCTACAGTAATATATGAACATTCTGTTGCTTTTTGGCTCCAATAGCTTATTTGATCAGTTTCATTATTGGCATTTCTTGATACTAGAAGAAACCACACAATGTCGACCCAATGGACTTGAATTTTCACAATGTCTCTTTCTTTTGCCGAACCCTCATTGCTGGGAAAGAATAAAATGATTGCAACAAACGTTCTATAGTTGTAATTTACAAGTATGCAGTGCAGAAAATGTTCTGATCTTCCGTCTGGTGTTATTGTTCTTCTGTTTAAAAGGTGCTGCAGAGTAGTATGGCCGCTGTGCATACAGTAGACTTAACAATGTCTGATTTCCCTGTTTTAAAAGGTCATTTTGTCTGTATTTGCTTGTTTTGTATTGTGAATGGTATTTCAAATACCATGTCATGTTCTCCATGATACGAGAGAGTAGTCTTATCATAATTATGTTTCCATTTCAACCACCATGACATAAGATGATTTTCTGTGAAGATCCTCTCTATTGAAAAGGCCAGATATTTTTGAAGGCACAAAAATGGCATTTTAAAATCCATCTTAGCAACTAAGTGTATTAATTCACATTTGTCACTCCCTGGTTGTCTCTAGTCATGACTTCACAGCCATTAAAATTCACTGTTAAGCA
>XM_036961391.1
GCACACCACACATTGGAGCCGCTGAGCTGAGAAGCGGAAAAGGGTATCTGTCGTCGTGCACACATTTGAGCATAGGCTATACCACGAATTGGGGCTCTCCAAGGAAGCTAAATTGGAGGACGAGGGCGTGTTTGTTTTTACTGAGCCTTTCGGTTTTCATTTTCTGCAGTCTTGGTAAGAGAACGGAATATATTAGGGTCTGTTTCAAGGACTAGAGCAGAGATGTCAGAGTTTCTGGTGAATCTACTCGGGGAGCGGCTCGTCAACAGCGAGACAGCCGAGGTGGATGTACAGGCGCTGGGCAGCAAGCTGTCCCTGGTCGGGCTCTACTTCGGCTGCAGTTTAAACGGCCCCTGTAAGCAGTTCAACGCCAGTCTGTGTGAGTTTTATAGCAAGTTCAAAAAATCATCTGAACATAAAGACACATTGGAAATCGTCTTCGTCTCATCTGATCAGGACCAGAAACATTGGCAAGACTTTTTACAGGAGATGCAATGGCCGGCATTGCCTTTCAAAGATAGACACAAAAAGATGAAGCTGTGGAACAAGTACAAGGTGACCAGTATTCCCTCGCTGGTGTTTGTGGACGCAGCCACAGGGAAGGTGGTGTGTCGGAATGGACTGCTGGTGGTGAGAGATGACCCCAAAGgCTTGGAGTTCCCCTGGGGGCCCAAGCCCTTTGCGGAGGTGGTGGCCGGCCCTCTGCTCAGGAACAACAGGCAGACGACAGACATCAGCTCCCTGGAGGGCCACTATGTGGGAGTGTACTTCTCAGCACACTGGTGCCCTCCATGCCGCAGTCTGACCCGTGTGCTCTTGGAATCATATCGCACTGTGAAGGAATCGGGTCAACATTTTGAGATGGTGTTTGTCAGCGCTGACCGGTCGGAGGAGTCCTTTCAGCAGTACTTCAGTGAGATGCCTTGGTTGGCAGTCCCATACTCAGACGAGGCCCGACGATCACGACTCAACAGACTCTTTGGAATACAAGgTATTCCCACCCTTATTCTGCTGGACGCGGAGGGTCACATGATCACGCGACAGGGCCGTGTGGAGGTGCTGAATGACCCAGAGTGTCGGCTCTTCCCCTGGCACCCCCGGCCTGTACTGGAGCTCAGCGAGTCTAACGCTGTGCAGCTCCACGAGGGGCCCTGCCTCGTGCTCTTTGTGGatacgGAGGAGGAGGGTGAGCTGGAGCCGGCGAAGGAGCTGATCCAGCCAATCGCAGAGAAGATCATGGCTAAGTACAAAGCCAAGGAGGAGGAGACACCACTGCTCTTCTTCGTGGCTGGAGAGGATGACATGAGTGACTCCCTGCGTGACTACACCAACCTCCCAGAGGCAGCACCCCTGCTCACCATCCTGGACATGTCTGCCCGGGCCAAGTACGTTAAGGACGTGGAGGAGATCACACCGGCCGTGGTGGAGACCTTTGTCCAAGACTTTCTGGCTGAAAAGCTCAAACCAGAGCCCATCTAGAGAGCACGGCTAGActgtcccaaatgacactatatagggaatagggtgccatttggggaacACACCTAAACTTATGGGACTGAACCCACACCTCCATCAAACCCTGAACTCCCGGCTACCACCAGCCAGCCTCCTCTCCAGTCTCCCCCTTTTAGTCAAAGGTCTCACTTTTGACTGACATCAACTTTTTTCAGACAGGTCTTTCTCTCATGGAGTCTTCTCCTGTGGTGCCTTGCATTGACTAAAGCCCCTACAGTAATATATGAACATTCTGTTGCTTTTTGGCTCCAATAGCTTATTTGATCAGTTTCATTATTGGCATTTCTTGATACTAGAAGAAACCACACAATGTCGACCCAATGGACTTGAATTTTCACAATGTCTCTTTCTTTTGCCGAACCCTCATTGCTGGGAAAGAATAAAATGATTGCAACAAACGTTCTATAGTTGTAATTTACAAGTATGCAGTGCAGAAAATGTTCTGATCTTCCGTCTGGTGTTATTGTTCTTCTGTTTAAAAGGTGCTGCAGAGTAGTATGGCCGCTGTGCATACAGTAGACTTAACAATGTCTGATTTCCCTGTTTTAAAAGGTCATTTTGTCTGTATTTGCTTGTTTTGTATTGTGAATGGTATTTCAAATACCATGTCATGTTCTCCATGATACGAGAGAGTAGTCTTATCATAATTATGTTTCCATTTCAACCACCATGACATAAGATGATTTTCTGTGAAGATCCTCTCTATTGAAAAGGCCAGATATTTTTGAAGGCACAAAAATGGCATTTTAAAATCCATCTTAGCAACTAAGTGTATTAATTCACATTTGTCACTCCCTGGTTGTCTCTAGTCATGACTTCACAGCCATTAAAATTCACTGTTAAGCA

Function

NR:

description
nucleoredoxin isoform X1

GO: NA

KEGG:

id description
K17609 NXN; nucleoredoxin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582588.2 False 2050 mRNA 0.48 8 18504076 18533662
XM_021582589.2 False 2012 mRNA 0.48 8 18504076 18552009
XM_021582587.2 False 2424 mRNA 0.49 8 18504076 18561364
XM_036961391.1 True 2364 mRNA 0.49 9 18504076 18561364

Neighbor

gene id symbol gene type direction distance location
LOC110503930 LOC106612786 coding downstream 2961 18495268 ~ 18501115 (-)
LOC110503927 kiaa0100 coding downstream 9278 18465399 ~ 18494798 (-)
LOC110503926 LOC106612787 coding downstream 38834 18453991 ~ 18465242 (-)
LOC110503925 LOC106612788 coding downstream 48478 18450674 ~ 18455598 (-)
LOC110503923 LOC106612789 coding downstream 56523 18437538 ~ 18447553 (-)
LOC110503933 txndc17 coding upstream 566 18561930 ~ 18566131 (-)
slc47a3 NA coding upstream 195982 18757346 ~ 18764696 (-)
slc13a5b LOC106612936 coding upstream 213892 18775256 ~ 18787927 (-)
LOC110503941 LOC106612935 coding upstream 227855 18789219 ~ 18794812 (-)
wdr81 wdr81 coding upstream 233890 18795254 ~ 18813800 (-)
G1909572 NA non-coding downstream 46858 18456536 ~ 18457218 (-)
G1909483 NA non-coding downstream 93047 18326648 ~ 18411029 (-)
G1909484 NA non-coding downstream 193590 18309787 ~ 18310486 (-)
G1909496 NA non-coding downstream 215532 18286714 ~ 18288544 (-)
G1909495 NA non-coding downstream 217901 18283361 ~ 18286175 (-)
G1909868 NA non-coding upstream 112715 18674079 ~ 18674678 (-)
G1909869 NA non-coding upstream 114313 18675677 ~ 18677393 (-)
G1909902 NA non-coding upstream 178701 18740065 ~ 18740282 (-)
G1909911 NA non-coding upstream 193624 18754988 ~ 18755486 (-)
LOC110503924 LOC107554284 other downstream 69284 18432024 ~ 18434798 (-)
LOC118944080 LOC106612823 other downstream 1225666 17277554 ~ 17278524 (-)
G1907951 NA other downstream 2342850 16158846 ~ 16161226 (-)
G1907922 NA other downstream 2371514 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 2459771 16036987 ~ 16044740 (-)
LOC110503944 LOC106612932 other upstream 406698 18968062 ~ 19185772 (-)
G1910398 NA other upstream 599085 19160449 ~ 19162158 (-)
G1910539 NA other upstream 771477 19332841 ~ 19333225 (-)
G1910651 NA other upstream 929353 19490717 ~ 19491608 (-)
G1910996 NA other upstream 1129702 19691066 ~ 19691513 (-)

Expression


Co-expression Network