LOC110503933 (txndc17)


Basic Information

Item Value
gene id LOC110503933
gene name txndc17
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 18561930 ~ 18566131 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039333.1
cacaatgccacaaatgtctcaagttctgagggagtgcacaattggcatgctgactgcaggaatgttcaccagaccTTGTGACagTTGGAAGGATCCCAATAATGAATTCAAGAAGACTCTGAAGCTCAGTGGAGTTCCCACTCTGATCCGATATGGCACGCCTCAGAAGCTGGTTGAGGAGGAGTGCTTCAAAGCTGACCTGGTGAGGATGATGTTCACTGAGGACTAGAGGGCTACAGCGGACCACACTCACCCTGCACTTGGTCATCTTCCATTTCCCCCTCTCCTGAGATCCAGTCCAATCACCTTTTCACTACACTTGATTGAATTGATTGTTTCTTTGGAATTCAAATACACACTCCTCTCCCTGCGAGGTAGTGTTAATCAGTGAATGTGTTGCTATTCTTACATGGAAATAAAAAGAAACTATAACATAACCAGAGGCCTTGGTAGAGCTAGCTGACTGCTTTTAGAACTTGATGTTTCATTTAGTAAATTAAATAGAAGAGTTATAATAACATAGCCCACCAGACAAATTGTGTCAAATGAATTGAATCTCATCAATTGATGATTCTTGTTTCTTACTTACGGCAGTAAtctatagagtgaggatataaaCTGAAGCATTACCTGGTATACTGTGATTGTTATAGTGTATAACTTAGTCAAATGAAAATAAATGATGGCTGGATGAAAACA
>XM_021582593.2
GTGggtgtcacgtgtcctacttataaCGAGTGCACCCGTAACAACCTAAGAATTACGAAACATATATTAAATCAACTAAACAtcacgtagcaaataagccattaaccaaattcgacactctttgacatccatacaaaaactcctcacTTGGTGGGCAAAAATGGCACGGAGACAGATTTCCCTCCGAGTTGagcctctctctttacctcttacACTCTGCTTGTAGTATTTTAGAAGCGAACATAGGGCGAAGAGTCCATGTCGTATTTGTTATTGCATGAAATGCTTCATACCTGCTTGCCTAGCCTACGATAATTGATAATACTGCTTCTTATTCTATATCATCATGTCTCATTACGAAGAAGTAAAGGTCCATGGTTATGATGAATTTTGCAAAGCCGTGTCTGAGAGGAAAGGAAATGACATATTTGCATATTTCTCTGGTGATATAGACACTCAAGGGTTGAGCTGGTGTCCAGATTGTGTGAAAGcTGAGCCAATTGTTAGAGGAGAGATGTCCCACCTTCCTGAGGGCTCAGTCTTCTTCTACTGTCAGGTTGGAGAGAGGCCCTATTGGAAGGATCCCAATAATGAATTCAAGAAGACTCTGAAGCTCAGTGGAGTTCCCACTCTGATCCGATATGGCACGCCTCAGAAGCTGGTTGAGGAGGAGTGCTTCAAAGCTGACCTGGTGAGGATGATGTTCACTGAGGACTAGAGGGCTACAGCGGACCACACTCACCCTGCACTTGGTCATCTTCCATTTCCCCCTCTCCTGAGATCCAGTCCAATCACCTTTTCACTACACTTGATTGAATTGATTGTTTCTTTGGAATTCAAATACACACTCCTCTCCCTGCGAGGTAGTGTTAATCAGTGAATGTGTTGCTATTCTTACATGGAAATAAAAAGAAACTATAACATAACCAGAGGCCTTGGTAGAGCTAGCTGACTGCTTTTAGAACTTGATGTTTCATTTAGTAAATTAAATAGAAGAGTTATAATAACATAGCCCACCAGACAAATTGTGTCAAATGAATTGAATCTCATCAATTGATGATTCTTGTTTCTTACTTACGGCAGTAAtctatagagtgaggatataaaCTGAAGCATTACCTGGTATACTGTGATTGTTATAGTGTATAACTTAGTCAAATGAAAATAAATGATGGCTGGATGAAAACA
>TU2183885
gagaacaagtatttgatacactggtTTTCtatgagactgtggtcccagctctcttcaggtcattgacaaggtcctgccgtgtagttctggcctgatccctcaccttcctcatgatcattgatgccccacgaggtgagatcttgcatggagccccagaccaagggtgattgaccgtcatcttcaacttcttccattttctaataattgcgccaacagttgttgccttctcaccaaactgcttgcctattgtcctgtagcccatcccaaccttgtgcaggtctacaattttatccctgatgtccttacactgctgtctggtcttggccattgtggagaggttggagtctgtttgattaagtatgtggacaggtgtcttttatacaggtaacgagttaatacaggtaatgagtggagaacaggagggcttcttaaagaaaaactaacaggtctgtgagagccggaattcttactggttggtaggtcaTCAAATACTAatatcatgcaataaaatgcaaattaattacttaaaaatcatactttgtcattttctggatttttgttttagattccgtctctcacagttgaagtgtacctatgataaaaattaaagaactctacatgctttgtaagtaggaaaacttgcaaaatcatcagtgtatcaaatacttgttctccccactgtacctttTCATCTTCGACCAGTTGGAAGGATCCCAATAATGAATTCAAGAAGACTCTGAAGCTCAGTGGAGTTCCCACTCTGATCCGATATGGCACGCCTCAGAAGCTGGTTGAGGAGGAGTGCTTCAAAGCTGACCTGGTGAGGATGATGTTCACTGAGGACTAGAGGGCTACAGCGGACCACACTCACCCTGCACTTGGTCATCTTCCATTTCCCCCTCTCCTGAGATCCAGTCCAATCACCTTTTCACTACACTTGATTGAATTGATTGTTTCTTTGGAATTCAAATACACACTCCTCTCCCTGCGAGGTAGTGTTAATCAGTGAATGTGTTGCTATTCTTACATGGAAATAAAAAGAAACTATAACATAACCAGAGGCCTTGGTAGAGCTAGCTGACTGCTTTTAGAACTTGATGTTTCATTTAGTAAATTAAATAGAAGAGTTATAATAACATAGCCCACCAGACAAATTGTGTCAAATGAATTGAATCTCATCAATTGATGATTCTTGTTTCTTACTTACGGCAGTAAtctatagagtgaggatataaaCTGAAGCATTACCTGGTATACTGTGATTGTTATAGTGTATAACTTAGTCAAATGAAAATAAATGATGGC
>TU2183887
TTTAGAAGCGAACATAGGGCGAAGAGTCCATGTCGTATTTGTTATTGCATGAAATGCTTCATACCTGCTTGCCTAGCCTACGATAATTGATAATACTGCTTCTTATTCTATATCATCATGTCTCATTACGAAGAAGTAAAGGTCCATGGTTATGATGAATTTTGCAAAGCCGTGTCTGAGAGGAAAGGAAATGACATATTTGCATATTTCTCTGGTGATATAGACACTCAAGGGTTGAGCTGGTGTCCAGATTGTGTGAAAGcTGAGCCAATTGTTAGAGGAGAGATGTCCCACCTTCCTGAGGGCTCAGTCTTCTTCTACTGTCAGGTTGGAGAGAGGCCCTAGTATGTAGGCTACTCAACTTTTTCTTCATATTCACTGGTGATGATAGCAGAATGATAGTGTTGTGCAATCCACAGGCAATAGAAAATAAGTATTCTTCTTACCctctgaccgtagattgctttgtatgtttctatttttagtttggtcagggtgtgatgtgggtgggtattctgttttgttctatgtttgtatttctatgtgtttgggatggttcccaatcagaggcagctgtcaatcgttgtctctgattgtgaaccatacttaggcagcctggtttcgcccttgagttgtgggtagttattttgtGTGTATCAcatgacagaactgtttcgtacTCGTTATGACtctagtgttcagttttgattaaatttacaacatgaacacttaccacgctgcgctttggtctactccttccACCAACGAAAACCGTTACACCCTCAAATGCAGCTAGAAGTTTTGAAAAGCTTAAATACATTGTACAAGTTGTAACATCATGAATTGTTGTCTCTCTTGGACAGCATATTTGAAATGAGCAAAATACACTGAATaacaatataaacgcaatatgtaacgtgttggtcccatgtttcatgagctgaaataaaaggtc

Function

symbol description
txndc17 Predicted to enable protein-disulfide reductase (NAD(P)) activity. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Orthologous to human TXNDC17 (thioredoxin domain containing 17).

NR:

description
thioredoxin domain-containing protein 17-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039333.1 False 699 mRNA 0.41 3 18561930 18564460
XM_021582593.2 False 1188 mRNA 0.41 4 18561930 18566131
TU2183885 False 1305 lncRNA 0.41 2 18561942 18563550
TU2183887 True 955 lncRNA 0.40 2 18564660 18565902

Neighbor

gene id symbol gene type direction distance location
LOC110503929 LOC106612785 coding downstream 566 18504076 ~ 18561364 (-)
LOC110503930 LOC106612786 coding downstream 60815 18495268 ~ 18501115 (-)
LOC110503927 kiaa0100 coding downstream 67132 18465399 ~ 18494798 (-)
LOC110503926 LOC106612787 coding downstream 96688 18453991 ~ 18465242 (-)
LOC110503925 LOC106612788 coding downstream 106332 18450674 ~ 18455598 (-)
slc47a3 NA coding upstream 191215 18757346 ~ 18764696 (-)
slc13a5b LOC106612936 coding upstream 209125 18775256 ~ 18787927 (-)
LOC110503941 LOC106612935 coding upstream 223088 18789219 ~ 18794812 (-)
wdr81 wdr81 coding upstream 229123 18795254 ~ 18813800 (-)
LOC110503944 LOC106612932 coding upstream 405550 18968062 ~ 19185772 (-)
G1909572 NA non-coding downstream 104712 18456536 ~ 18457218 (-)
G1909483 NA non-coding downstream 150901 18326648 ~ 18411029 (-)
G1909484 NA non-coding downstream 251444 18309787 ~ 18310486 (-)
G1909496 NA non-coding downstream 273386 18286714 ~ 18288544 (-)
G1909495 NA non-coding downstream 275755 18283361 ~ 18286175 (-)
G1909868 NA non-coding upstream 107948 18674079 ~ 18674678 (-)
G1909869 NA non-coding upstream 109546 18675677 ~ 18677393 (-)
G1909902 NA non-coding upstream 173934 18740065 ~ 18740282 (-)
G1909911 NA non-coding upstream 188857 18754988 ~ 18755486 (-)
G1909914 NA non-coding upstream 200085 18766216 ~ 18766447 (-)
LOC110503924 LOC107554284 other downstream 127138 18432024 ~ 18434798 (-)
LOC118944080 LOC106612823 other downstream 1283520 17277554 ~ 17278524 (-)
G1907951 NA other downstream 2400704 16158846 ~ 16161226 (-)
G1907922 NA other downstream 2429368 16131990 ~ 16132562 (-)
LOC110503846 NA other downstream 2517625 16036987 ~ 16044740 (-)
G1910398 NA other upstream 594318 19160449 ~ 19162158 (-)
G1910539 NA other upstream 766710 19332841 ~ 19333225 (-)
G1910651 NA other upstream 924586 19490717 ~ 19491608 (-)
G1910996 NA other upstream 1124935 19691066 ~ 19691513 (-)

Expression


Co-expression Network