tsr1 (LOC106613038)


Basic Information

Item Value
gene id tsr1
gene name LOC106613038
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 19525896 ~ 19542981 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582613.2
AAATGCGGAAGTGGACTACGTCATCAAAGTTGGCAGGCTGTCGCACGCTCGTGGCGAAAATGGTGTCTGGTGCAGAACAACAACAGGGCCATCGAGCTGGGGtttataaacaaaaaaacaaaggacATAAACATGGAAAGCATCGGACGAAAGGAGAAATCGAACGGGAGAACAAGGGTAGAGTGTCGGTGACGGCTCTTACCAAGAAACAGAGGAAAGAGGCGAGAAAGATGGACAAAAGGCACAAAGCCAACCAGCTGCGGCGAAATAAGAAGGACCTGGTCCTGACAGAGAAGCGTCGTCTGGGCAGCAGGGATGGTCCACCCCATCTGGTGGCTGTGGTCGCCCTCCATGCAGGTGTGGATGCTGAGGCTGTGACCAGGTTGCTGCGGTGTGAGGGGGCTGGCGGGCTGGTGCGTGAGGAGAACAGTGTGTGTGGGGTTAGTGACAGCTTTGGCCTGGTCATGCCCCGCTTCaaacagaggttcaccttcctcCGCCCAGACACAGcTGACATGCACTCTCTACTGGACGTGGTGAAGGTAGCAGACAGTCTGGTGTTTGTGCTGGACTCTACAGAAGGCTGGGACAGCTATGGAGACCACTGCCTCTCCTGTCTCTTTTCACAGGGGCTACCAGCCCATGCTCTGGTGTGTCAGGGTGTTTCAGATCTGGCAGTGAAGAAGCGTGTGGACTCACGGCGGGCACTGGCCAAGATATCTGAAATCCGCTTCCCTGGGGCGCGCCTCTTCCCCCTGGACTCAGACCAGGACGCCACACTGATGCTAAGACACCTGGGAGCACAGAGGCAGAGGAGGCTGGGCTTCCGCTCCCGTCGGCCTCACCTCCTGGCCCAGCAGGTCTCCTACACCCCCAACAGCTCTGAGGGGAGTGGGGGAGCCCCCACGGGCCTAGGGACCCTGCGTGTGTCTGGGTATGTCCGAGGCTGCCCTCTGCAGGTGGACAGGCTGGTGCACATCTCTGGATTTGGAGACTTCCTGCTCAGTCAGATCGATGCTCCCATAGACCCCCTTCCCCTCAACTCTATGACCTCTCGCCCTGCCAAGCAAGGGAAGGAAGGAGATGTAGACATGCAGGATGGTGGTGTTGAGGTGGCGTCAGTGCGGGTGCTGATGAAGGCAGACCCAGCTCGCAGGGAGAGTCTGCAGGCCGAGGCAGAGGTAGACCCCATGGATGGAGAGCAGACCTGGCCCACTGATACTGAACTGCTGGAGGCTgaagAGGCCAGAAAGAGCAAGCGTGTAATGAAGGTGCCCAAAGGGACATCAGACTACCAGGCCACGTGGATTGTggatgaggaggatgagaatggcgaggaggatgaagagagtactgacgatgaggaggatgaggatttGGTGATGGAGGAGTCCATAGATGGAGAGGACCTTGACTCTCAGGTGGATGCTGCCTCAGGTGGTGGctctgatgaggaggaggaggaggaggaggagctgaatTCCACATCGGATAAGGGTGGAGCAGACCAGCGCTATGATGAGCACATGGACGAGgcggaggaaggggaggggttaaAACGATACCGGGAGGCTCGGGCCAATGAGATGTTCCCAGATGAAGTGGACACCCCTCTAGACCAATCGGCTAAGAACAGGTTCCAGCGTTACAGGGGCCTGAAGAGTTTCCGCTCCTCCCCCTGGGACCCCTTGGAGAACCTGCCTGCAGACTACTCCCGCATCTTCCAGTTTCAGAGCTTTGAGCGCACACGCCGCCGCGTACTAGCTGAGGCTGCGCAGGAGGAAGAGGGGGCCATGGTGGGCTGGTATGTGACCCTCCATGTAGTGGATGTTCCCCCCACGGTGATGGAGAGTGTCCAGGCAGGCAGGCCTCTGGTGCTGGTCTCCTTACTGCCACATGAACAGAAGATGTCAGTGATGCACATGCTGGTGAGGAGACACCCCAGCAACACAGACCCTATCAAGTCTAAAGAGGAGCTGGTGTTCCACTGTGGATTCAGGAGGTTCAGGGCCTGCCCCATCTTCTCCCAGCACACATCAGCCGACAAGCACAAGCTGGAGCGTTTCCTTCAGGCTGACGCCCCCACAGTGGTTTCTGTGTACGCCCCCATCACATTCCCCACCGCTGGGGTACTGCTTTTCAAACAGAGGGAGGATGGCATGCAGGACCTGGTGGGGACAGGAAGTCTGCTGAGCTGTGACCCCCAGCGTGTGGTGCTGAAGAGGATCGTGTTGAGTGGCCACCCCTTCAAGATCAACCGCCGGTCCGCTGTCTGTAGATACATGTTCTTCAACAGGGACGACATCCTGTGGTTTAAGCCTGTTGAGCTGAGAACCAAGTGGGGCCGGAGAGGACACATCAAGGAGGCCCTAGGTACTCATGGACACATGAAGTGTGTATTTGACAGCCAAATGCGGTCTCAGGATACTGTCATGATGAACCTGTATAAGAGGGTCTATCCTCGCTGGACATATGACCCCTATGTGCCTTTGCCCCTGCCCTGGGTCAAGGGGGAAGGGACTCAGGTGCCGGATGATTTTGACATGGAGTAGGTGGTGGTCTGTTGCAAGAGGTGTGTTGGAGTCTGTAGAGAGTTGCATGGACTGTGGTGATTACATTTTCACTCCAATAGATGGATTGTAATGTGTATTAAATAAAACCAATGAGACCAAA

Function

NR:

description
pre-rRNA-processing protein TSR1 homolog isoform X1

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K14799 TSR1; pre-rRNA-processing protein TSR1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582613.2 True 2673 mRNA 0.56 15 19525896 19542981

Neighbor

gene id symbol gene type direction distance location
LOC110503947 LOC106613039 coding downstream 8030 19506178 ~ 19517866 (-)
LOC118944022 NA coding downstream 24816 19498562 ~ 19502464 (-)
LOC118944057 NA coding downstream 127752 19397081 ~ 19398144 (-)
LOC110503944 LOC106612932 coding downstream 340124 18968062 ~ 19185772 (-)
wdr81 wdr81 coding downstream 712096 18795254 ~ 18813800 (-)
gmfg gmfg coding upstream 43929 19586910 ~ 19589097 (-)
nkapd1 cssa09h11orf57 coding upstream 317858 19860839 ~ 19864025 (-)
pih1d2 pih1d2 coding upstream 351109 19894090 ~ 19896893 (-)
LOC110503955 LOC106613029 coding upstream 354023 19897004 ~ 19904770 (-)
LOC118944068 LOC106581084 coding upstream 364178 19907159 ~ 19909801 (-)
G1910652 NA non-coding downstream 33899 19491770 ~ 19491997 (-)
G1910633 NA non-coding downstream 49398 19476241 ~ 19476498 (-)
G1910630 NA non-coding downstream 51313 19474289 ~ 19474583 (-)
G1910604 NA non-coding downstream 111593 19414084 ~ 19414303 (-)
G1910931 NA non-coding upstream 27880 19570861 ~ 19576495 (-)
G1910942 NA non-coding upstream 65685 19608666 ~ 19610426 (-)
G1910950 NA non-coding upstream 74188 19617169 ~ 19617575 (-)
G1910951 NA non-coding upstream 74682 19617663 ~ 19617916 (-)
G1910952 NA non-coding upstream 75052 19618033 ~ 19618262 (-)
G1910651 NA other downstream 34288 19490717 ~ 19491608 (-)
G1910539 NA other downstream 192671 19332841 ~ 19333225 (-)
G1910398 NA other downstream 363738 19160449 ~ 19162158 (-)
LOC110503924 LOC107554284 other downstream 1091104 18432024 ~ 18434798 (-)
G1910996 NA other upstream 148085 19691066 ~ 19691513 (-)
G1911862 NA other upstream 917687 20460668 ~ 20461437 (-)
G1912470 NA other upstream 1429698 20972679 ~ 20976236 (-)
G1913665 NA other upstream 2320607 21863588 ~ 21864274 (-)
G1913663 NA other upstream 2328272 21871253 ~ 21872149 (-)

Expression


Co-expression Network