pih1d2 (pih1d2)


Basic Information

Item Value
gene id pih1d2
gene name pih1d2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 19894090 ~ 19896893 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582626.2
TGCACCATTCTCATCTCGTTTCCATAGTAACAGAGATCACTCGCTACAAAGTTGATTTAGTCAACATTTAGCTGTAAAGTTAGCACAGGGGTCGCAAGAACTTGAAGCAAGCAAGTTTACTAAATATGTCTTCTTCCCTGGGGTGTACAAAGGAAGTTTTGCAGCAGGTCAACCAGTTCTGGTCCATGTTAGACGACCTGTCTCAGAATGACCCTCAAAGCTACCAGATGTTTATCGAGAAACAGATGAAACAGGGAACTGATTATAATGCACCACCTCAGCCTGACTCCTGCCTACTCACTGAAATGCTGGAGCCAAAGAAAGGGTTGCTGTACATCAATGTGTGTGGCTGGAAGCGCGTCCCTACCCCTGCTGATGAGAACAAGCCAGTGCCTGTGTGTGGAGGGAGACTGGAGACAGACACTGATGAAGGAGGAGACGACTACAGTGTGATGGATGTGGCGTTCAGCCCTGCGGTGCTGCAGCAGGCTCAGAAGGACAAGAAGGAGGACCAGGTTCACCTGTTAGCTCTGAGCTTCACCCAGCAGCAGCATGGCCTGCGTCTGATCCAGCAGTACAACGTCAGCAGCAGTAAGCTGAAGGGCAGCCTAGAGGACATGCAGCGCCGCCTGGGTTCTCTAAAACAGTCCAGCCCTGCCACAAACACAGCCTCCCAGACCCCAGCTTCCCTGCTTCAGCAGATCTCTCTGCGTGAAGGGCAGACTGAGGACAGTACACCTGTGCAGCTCATCACATCTGTCGAGCTAACTCCTGGGCCAGGGGACCAACGCAACAAGACCAAGAACCTGATCCAGGTGATCTCTAGCTCAGTGACAGCCGAGCCTCAGCGGCCACAGCACCAGCTCACTGTCAACTCTGACCCCAGGGACCTCTCCCGGAGCCTGAAGCTGACTGTGGAGCTACCAAAGGTTCAGTCCATCACAGAGTGCCATCTCAGCATTTCCCAGGATGATGTACTACTAGAAGTGGAGGATATGTACCATCTACACCTGGAGCTGCCTGAGACTGTGAATGAGGAGTCGGCCTCTGCCACATTCAACAAGAAGAAACGGTTATTAACTTTGCAGGTGTCTATACTCTAGTGCTGGTACTGCCAACACTAAAAAGACGCAAATTCATTAATAGACAAAGAAAATAACAATAAACACTGTCTTTTCCTGCAAGACACAGTTACACCCAGTAGGTCATTTGTCTTTCTGAAGAGATTGGGACTTTGGAAATTAGAGAAGGCAGGAATGTAATTTCTGTTATGTTATGCATATAAGTTGTGTATCTGAACCTTTGTAGTAGTAAACAGTACCTTAGTAAAGACATTCACAACAACAATGACTCGAGTGGAATTTTAGTCCTCCATGATCATGAATTACATTAACTGCATGTCTGGGAAATAATTCACAAAGTCAATATTCATGCAATAATCCATGTTTATTAAAACTTCAAAATTG

Function

symbol description
pih1d2 Acts upstream of or within axonemal dynein complex assembly. Predicted to be part of R2TP complex and ribonucleoprotein complex. Predicted to be active in cytoplasm. Is expressed in Kupffer's vesicle; floor plate; otic placode; and pronephric duct. Orthologous to human PIH1D2 (PIH1 domain containing 2).

NR:

description
PIH1 domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582626.2 True 1466 mRNA 0.47 6 19894090 19896893

Neighbor

gene id symbol gene type direction distance location
nkapd1 cssa09h11orf57 coding downstream 30065 19860839 ~ 19864025 (-)
gmfg gmfg coding downstream 304993 19586910 ~ 19589097 (-)
tsr1 LOC106613038 coding downstream 351109 19525896 ~ 19542981 (-)
LOC110503947 LOC106613039 coding downstream 376224 19506178 ~ 19517866 (-)
LOC118944022 NA coding downstream 393010 19498562 ~ 19502464 (-)
LOC110503955 LOC106613029 coding upstream 111 19897004 ~ 19904770 (-)
LOC118944068 LOC106581084 coding upstream 10266 19907159 ~ 19909801 (-)
LOC101268962 LOC106581153 coding upstream 14226 19911119 ~ 19941312 (-)
LOC110503959 ncam1 coding upstream 44999 19941892 ~ 20059903 (-)
LOC110503963 LOC106613022 coding upstream 382099 20278992 ~ 20324314 (-)
G1911069 NA non-coding downstream 82262 19811544 ~ 19811828 (-)
G1910997 NA non-coding downstream 200745 19693105 ~ 19693345 (-)
G1910977 NA non-coding downstream 231087 19662714 ~ 19663003 (-)
G1910974 NA non-coding downstream 238347 19655525 ~ 19655743 (-)
G1910971 NA non-coding downstream 245836 19648040 ~ 19648254 (-)
G1911307 NA non-coding upstream 189732 20086625 ~ 20086833 (-)
G1911321 NA non-coding upstream 199327 20096220 ~ 20096449 (-)
G1911721 NA non-coding upstream 330735 20227628 ~ 20229328 (-)
G1911744 NA non-coding upstream 362484 20259377 ~ 20264263 (-)
G1910996 NA other downstream 202577 19691066 ~ 19691513 (-)
G1910651 NA other downstream 402482 19490717 ~ 19491608 (-)
G1910539 NA other downstream 560865 19332841 ~ 19333225 (-)
G1910398 NA other downstream 731932 19160449 ~ 19162158 (-)
LOC110503944 LOC106612932 other downstream 920860 18968062 ~ 19185772 (-)
G1911862 NA other upstream 563775 20460668 ~ 20461437 (-)
G1912470 NA other upstream 1075786 20972679 ~ 20976236 (-)
G1913665 NA other upstream 1966695 21863588 ~ 21864274 (-)
G1913663 NA other upstream 1974360 21871253 ~ 21872149 (-)
G1915836 NA other upstream 3854950 23751843 ~ 23752463 (-)

Expression


Co-expression Network