LOC110503955 (LOC106613029)


Basic Information

Item Value
gene id LOC110503955
gene name LOC106613029
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 19897004 ~ 19904770 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582621.2
TGGCAAAACAACAGGTTCATTCAGCAGCACAGCACCACTGCTGACCTCACTGTCTCTTTGTGAAGGGAAAATCCAGAGTTGCATTCTGTAAAATGGCAAATGGTCGACCAGCTGCGAGCAGAGcgcatctctgtctctaacctAACACAGGCCTACAGATGAGCGTTGAAGAGCCCAGTGCCACACTCTCCTCTGGACAACATAACATACAAGGAAAACATGAATCTTGATGGAGATATATTATCTGTGATTGAGAATCCTGTGGCTGTCAGTCATCCTTTTCACCCAGAGAAGACAGGAGTGGGAGAGGCCCGAGGAGCTCAGAGTCAGAGCTGCCATGCCTGGCTGAGAGGAATCCATTCTACAAACCACGCCCATAGACTGGTGAGAGTACTGGTTGCTGTGTGTGCAGTGGGACTTCTGGGAGGCTTAGCAGTCGGAGTGTGGTTCTTAGTCAGGTTGTTGTTGCGGCCTACCTCCTCTCAGAGTCCAGCAGGGCTGGGGGACACCAAGGAGACGTCCTTCTGTAACGTGACCGAGGACATCTCTGTGGCTGACCCCAGGAAAGTGTTTTACAGAATCAGCCCGGAGAACTCTCTCCTGGAGATCCAGCTAGAGAAGGTGCCCACGTGGCTGCCTGTGTGCTATGAGAGATGGAACTCTTCCCTGGGGACCCTGGTCTGCCGCCAGCTGGGATATCTAAGACTGACCAAGCAAAAAGGGGTGAACTTAACGGACATCGGACCTAACTACACCGATGGCTTTATACAGATCACATCTGAACACAAGACCAGCCTGGAAAATATATGGCAGTTAAGgGGGAGTTGCGTCACAGGGAAGGTTATAGctttgaaatgttttgAGTGTGGGATGCGGGCTAAGCTGCCCAGGATAATCGGGGGAGTGGAGGCTACCTTGGGAAGGTGGCCCTGGCAAGTCAGTCTCTACTACAGCAACCGACACACCTGTGGAGGCACCATCATCACCAGCCAATGGGTGGTCACCGCAGCCCACTGTGTGCACAATTATAGGCTGCCACAGGTGTCCAGTTGGGTGGTCTACGCTGGTATTGTCACACGCAGTTCAGCTAAAATGGCTCAGTACACTGGATATGCAGTGGAAAAGATCATCTACAACAAGAAATACAACCCCAGGAGCCACGACAATGACATTGCTCTGATGAAACTACTGACCCCACTGAATTTCTCAGATACCATCAGGCCTATCTGTCTGCCACAGTACGAGCATGATCTACCAGGAGGAACACAGTGCTGGATCTCTGGCTGGGGCTACACTCAACCAGATGATGTTCTCATCCCTGCCACGCTAAAAGAAGCTACAGTTCCACTGATAAGCACCAAGAAATGCAACAGTTCCTGCATGTACAATGGAGAGGTCACCCCCCGCATGCTCTGTGCTGGATACACCGAGGGCAAAGTGGACGCATGTCAGGGAGACAGTGGGGGTCCGCTAGTCTGTCAAATTGACAACGTGTGGAGACTGGTGGGGGTGGTGAGCTGGGGTACAGGCTGCGCTGAGCCCAACCACCCCGGAGTCTACACCAAGGTGGCCGAGTTTCTCGGCTGGATCTACGACATGATTGAGAGctactgaggaggaagaggaataagACAATGGATGATCAGGGAGACTCCAGAACAGGCCTAGAGGAAACTGAAACATATGATGCTCCTGACATTCTTCCTCCTGTACTGTAAATGTAATTTTACCTCCTTATAACGGCCATGTTGATTGCAGAAATGCATACATTATTTAACAGTAGGAAATATTTTACACTATACATGTTTGTCATACATTGTATTTTTAGCACCTGAATGAGAACATATTTATACCATATATTTGTCTTGTATTGAAAATAAACGATGCTTCATATCTAAACATGTTCATT

Function

NR:

description
transmembrane protease serine 5-like

GO: NA

KEGG:

id description
K09636 TMPRSS5; transmembrane protease serine 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582621.2 True 1909 mRNA 0.49 13 19897004 19904770

Neighbor

gene id symbol gene type direction distance location
pih1d2 pih1d2 coding downstream 111 19894090 ~ 19896893 (-)
nkapd1 cssa09h11orf57 coding downstream 32979 19860839 ~ 19864025 (-)
gmfg gmfg coding downstream 307907 19586910 ~ 19589097 (-)
tsr1 LOC106613038 coding downstream 354023 19525896 ~ 19542981 (-)
LOC110503947 LOC106613039 coding downstream 379138 19506178 ~ 19517866 (-)
LOC118944068 LOC106581084 coding upstream 2389 19907159 ~ 19909801 (-)
LOC101268962 LOC106581153 coding upstream 6349 19911119 ~ 19941312 (-)
LOC110503959 ncam1 coding upstream 37122 19941892 ~ 20059903 (-)
LOC110503963 LOC106613022 coding upstream 374222 20278992 ~ 20324314 (-)
LOC110503964 LOC106613021 coding upstream 425223 20315054 ~ 20405167 (-)
G1911069 NA non-coding downstream 85176 19811544 ~ 19811828 (-)
G1910997 NA non-coding downstream 203659 19693105 ~ 19693345 (-)
G1910977 NA non-coding downstream 234001 19662714 ~ 19663003 (-)
G1910974 NA non-coding downstream 241261 19655525 ~ 19655743 (-)
G1910971 NA non-coding downstream 248750 19648040 ~ 19648254 (-)
G1911307 NA non-coding upstream 181855 20086625 ~ 20086833 (-)
G1911321 NA non-coding upstream 191450 20096220 ~ 20096449 (-)
G1911721 NA non-coding upstream 322858 20227628 ~ 20229328 (-)
G1911744 NA non-coding upstream 354607 20259377 ~ 20264263 (-)
G1910996 NA other downstream 205491 19691066 ~ 19691513 (-)
G1910651 NA other downstream 405396 19490717 ~ 19491608 (-)
G1910539 NA other downstream 563779 19332841 ~ 19333225 (-)
G1910398 NA other downstream 734846 19160449 ~ 19162158 (-)
LOC110503944 LOC106612932 other downstream 923774 18968062 ~ 19185772 (-)
G1911862 NA other upstream 555898 20460668 ~ 20461437 (-)
G1912470 NA other upstream 1067909 20972679 ~ 20976236 (-)
G1913665 NA other upstream 1958818 21863588 ~ 21864274 (-)
G1913663 NA other upstream 1966483 21871253 ~ 21872149 (-)
G1915836 NA other upstream 3847073 23751843 ~ 23752463 (-)

Expression


Co-expression Network