LOC118944068 (LOC106581084)


Basic Information

Item Value
gene id LOC118944068
gene name LOC106581084
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 19907159 ~ 19909801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039372.1
GTTTGTCTCGatttctttctctgtatctcaGGTGTTGGTGACTGGTCTATGGTCCACAGAGAGGGATTCCATCCATGCTCTCCTCGGTGATCTCCAACAGCTGTGCTCTCTATAGGGATTATGGAAACCACAGACCTCCCCCGTACCCCAGGAAGAACATCAGACCCAGAGCTTCACTTCAACACAACCCATATAACCCATACAGGCCATACCTGAGAAGGGTGGATACGAGAGTATCTTTAGCCGATCCCAAGAAAATCTCCAGGGCCAccagtaggggtcagtatgtcACCATGCCTGTTTGCCATCCAAGGCTGCATTTCTCTCCGAGACTGGCGCTAGGCATGGGGCAGCCCCGGGCCAACACCAGACAAAGCCCACTGCCGGTCAGTCAGAGGATCATCCAATCACAGCACAAAGCAAGGCAGACCAGGAGTGCTGGGAGCTGCTCCAGTTATAATACAAGCTCCTGGGTTGAGAAAGGCTCTAGTAAACCTGATAAAGGGAAGAAAACACCATACAAGGCCACATCTTCTTCTCCAAGAGTACAGGAGACATAAGCCACAAGAGTTCCAGTTCTAATGGTCGCCAGCAATATCGCTACTTCACCAAGGATGGAATGTGTCGCGGCTCGTCATACCACATGACACATTCATACTAAGAACAAGATGTGTGACCTGATCGGCACCCTGGTGGATCTGAAGTACAGCTGGATCCTGTTTGTCTTTACCCTGTGCTACAATGTCACCTGGACAGCCTTCGCAGAGCTCTACTTCCTGGATGCCTGGCTGCGTGGTGATGTGGAGCACATACAATGTGTTCCACATACAAACCCGCAATGGCAGCCATGCTTTGAGAAGCTGGACAGTTTCCATTCGGCCCTCTCTATCTCCATGGACAGCCAAATCATCAATGGCTACGGCACTAGAGAGGCCTCAGTCAACTGCATGGACGGGCTGGTTCTCATGATGTCACAGTCCGTCATTGAATCAGTGTTAGACGTCCTTATGCTGGGCTACATCCTGGCTAAGATAGCCAAGCCTAAGAGGAGGCTGCCCACTTTGTTGTTCAGTCAGCACTGTGTGGTCTGAGAGGGATGAGAGCCTGTGCCTGATGTTCAACGTCAGGACTTTGAAAGAGACACACATGCTGGTGGCAGAGATTAGAGCCAAGCTGATCAAATCTCACCATACCAAAGAGGGAGAGTTCATCCTGTTGGATCAGAGAGAGCTGACTCTGCGGATGGAACCAGATGGAGCCAGGTTGTTCACAGTGGAGCCCCAGACCATGGAGCATGTAATTGATGAACACAGGCCTCTCTGGGGCATCAGCACTGACTCTTTAAAGTGGGAGACCTTTGAAAACCGTGGTCATGGTGGATGGAGCCATGCAAGACGCGGGTTTGTACTGAGAGGCACAGCCTTCCATGTGAGGACCTCCTACACTGAATATGATATTCTTTGGGGACAGCGCTTTAAGTCATGCAAGCCATTAGATGAGAGGGGGATTGGGTCCAATCACAAGACCTCTGATAAGAACTATAAGGTCCAGATTGCCACACACAGTGACAAAGAGATGGCAGTGAGACATAGACATAAGAGATCTCCTGGACACGACACAGACACTGTCCCCTCCAACATGTCTACAAGGAAAGTACATTACCAGTATTTATCTGATCAAATGTTACTGTGCAACTCAGTCAGTAATAACAATGGCACAGGAACTAGGAAACTTAGTAAGAATGAGTTCTTTATATAAATATGGACGTTTGACAGGTCGGTATAGCAGGGTTCATCAAAGTGATGAAATCAAGACACACTGTACATATCCTCCAGAACGTTTATACAATGGGAATAAATGAATGATGATGACCAATATCTAAAGCTGCCACATCTTATTTATCAAACTTTCTGAAtacttacatttgtatatgtGAGCAGTGAGCACAGCATGCCTTGTGCTAGGCAAACACAATTATGCTGATTGTTAGTGGTCTCCTTACAGTATGCAAGGAATTACAaaaggttttttttttgttgcccatACACCAAACTCTCCCGATTTAAATGATGAGTGTCATTTAATGATTGTATTGTGGGGAACCAATTTGAGAAATGGAAGACCGAACTGACAGTCGCGCATGACAAGACAAATTAATGTCAGTATTACTGTCTCATCACCAGCAATGTGGATATCTCATTCATATACCATGCtagactcatatatatatatatatattacgtgGTAGATAAGCTTTAGCATTggagatagattgtggcttccatcaacgtaattgtctgcatcatttccaagcT

Function

NR:

description
PREDICTED: G protein-activated inward rectifier potassium channel 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039372.1 True 2315 mRNA 0.46 3 19907159 19909801

Neighbor

gene id symbol gene type direction distance location
LOC110503955 LOC106613029 coding downstream 2389 19897004 ~ 19904770 (-)
pih1d2 pih1d2 coding downstream 10266 19894090 ~ 19896893 (-)
nkapd1 cssa09h11orf57 coding downstream 43134 19860839 ~ 19864025 (-)
gmfg gmfg coding downstream 318062 19586910 ~ 19589097 (-)
tsr1 LOC106613038 coding downstream 364178 19525896 ~ 19542981 (-)
LOC101268962 LOC106581153 coding upstream 1318 19911119 ~ 19941312 (-)
LOC110503959 ncam1 coding upstream 32091 19941892 ~ 20059903 (-)
LOC110503963 LOC106613022 coding upstream 369191 20278992 ~ 20324314 (-)
LOC110503964 LOC106613021 coding upstream 420192 20315054 ~ 20405167 (-)
LOC110503968 NA coding upstream 545535 20455336 ~ 20458492 (-)
G1911069 NA non-coding downstream 95331 19811544 ~ 19811828 (-)
G1910997 NA non-coding downstream 213814 19693105 ~ 19693345 (-)
G1910977 NA non-coding downstream 244156 19662714 ~ 19663003 (-)
G1910974 NA non-coding downstream 251416 19655525 ~ 19655743 (-)
G1910971 NA non-coding downstream 258905 19648040 ~ 19648254 (-)
G1911307 NA non-coding upstream 176824 20086625 ~ 20086833 (-)
G1911321 NA non-coding upstream 186419 20096220 ~ 20096449 (-)
G1911721 NA non-coding upstream 317827 20227628 ~ 20229328 (-)
G1911744 NA non-coding upstream 349576 20259377 ~ 20264263 (-)
G1910996 NA other downstream 215646 19691066 ~ 19691513 (-)
G1910651 NA other downstream 415551 19490717 ~ 19491608 (-)
G1910539 NA other downstream 573934 19332841 ~ 19333225 (-)
G1910398 NA other downstream 745001 19160449 ~ 19162158 (-)
LOC110503944 LOC106612932 other downstream 933929 18968062 ~ 19185772 (-)
G1911862 NA other upstream 550867 20460668 ~ 20461437 (-)
G1912470 NA other upstream 1062878 20972679 ~ 20976236 (-)
G1913665 NA other upstream 1953787 21863588 ~ 21864274 (-)
G1913663 NA other upstream 1961452 21871253 ~ 21872149 (-)
G1915836 NA other upstream 3842042 23751843 ~ 23752463 (-)

Expression


Co-expression Network