LOC101268962 (LOC106581153)


Basic Information

Item Value
gene id LOC101268962
gene name LOC106581153
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 19911119 ~ 19941312 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582628.2
AGCTGTGACGTCGCCTGGGTGACAATTTGCCTACTTGGAGTGGGGATGAGTTTGGAGCGGGTTCTGTGAAATGCCTTACCATGATGTTGCCTGAATGATAACGCAATCGGCTGAGTGAGGACGTAACAGGCCGCTAAGACTTATAGACACACTGAAGGAAAAGCAGGTGGGATAGAACACACCTCATGCGTGGGCTCAGAGAGGGTCCGAGGCTGTACGGATCATCTGACTAAGATGGGTGTTCTCCAGCTCCACAACCCCACCCTCCCCGCCACGCTCCTGCACAGGGCCAATCATATGCGTCTGTCGGGAACGCTGTGTGACGTCATCATCACGGTGGATGGCCAGGAGTTCCCGGCCCACCGCACCGTCCTGGCCTGCACCAGCAAGATGTTTGAGATCTTGTTCCACCGCAGCAGCCTGCGCTACGCCCTCGACTTCCTCTCCCCCAAGACCTTCCAGCAGATTCTGGAGTACGCCTACACGGCCTCCCTGCAGGCCACGGCCGAGGACCTGGATGACCTGCTGTACGCCGCTGAGATCCTGGAGATCGAGTACCTGGAGGAGCAGTGCCTCAAAGTCCTGGAGACCATCCAGTCAGAGGAGAAGCAGGACCACCTGAGTCTGAGTGGGAGGAACCACGGGTCTGGAGAGAGCGAACATGGCAGGGCAAGGCACTGGAGGAACATGCTAATCTCCAAGAAGCATTCCATGCAGGAGGGTGGTATCAACCCCACCGCCCTGCACCACCTGGCACTGTACCACATGACTGACAGGAGTCCCTCTATGCCAGGGGGACTACCTATGGGGCTCCCTGTAGCTAGTCCCACACAAGTTGGAGGGCTTAGTCTGGAGGGCCTGGGTCAGTCTCCACTACAGTACAGCCTCAATGGAGCACAGCACCCCTCCCTGCCTCTGACTAAGAGGATAAAGACAGAGGACAATAACATGCAGGTGGATGAAGTCAATAGCTACGAGGGCCGGTCCTCCAGCGGAGGGGAGGGAGGCTTTGAATCGGACCAGCCCAGAGATGAGGGCCCGGGGACCCCCCAAAGAGGCAGTGTCATCACCTCGGCTAGAGAGCAGCACTCGGGCCAAGAGGAGGGGGGCATAGTGGGGAACAACTCTCCTCTGGACAGTTATCCTGTGCTGGCTGAGAAACACCTGGCCTCCCTCTACTCATCCATGCCCTCCAATCACATAGGGGAGGTGGGGTTGCCTATGCCCATGTCGGTGGCCCCTTCCCTAGCCATGTCCCTGGACCTGAGGGCCTACGGGGGACTGCTGCCCCAGGGCCTGCTCCACAGGGAGATCCTCAGCAGGCTGGGCCAGTTTGCAGCAGGGATGAGGCGGGAgggccagagtcagagtcagagctgTGGGGACTGTGGTCTCCAGCTGCATAACAGAGAGGCCATGGAGCAACACAGGAAGCTGCACAGTGGAGGCGAGAAGGGACACGGCTGTGAGTTCTGTGGCAAACGCTTCATAGACAGTGTACGGCTCAGGATGCACATGCTCTCTCACTCAGCTGGAGCTGAGGCCCTGGTGTGTGATCAGTGTGGAGCTACATTCTCTGCTGAAGACGCTCTGGAggcccacagacagacacacacagGGACAGACATGGCAGTGTTCTGTCTGCTGTGTGCCAAGCGGTTCCAGACCCAGAAGGCTCTGCAGCAGCACATGGAGGTCCATGCAGGGATGCACAGCTACGTCTGCAGCCACTGTGACCACACCTTCCCCAGCCACACCACCCTCAAACGCCACCTGCGCTCACACACAGGTGACCACCCGTTTGAGTGTGAGTTCTGTGGGAGCTGTTTCCGGGACGATGGCATGTTGAGGGGACACAAACGCatccacacgggagagaagccttacgAGTGTAACGGCTGTGGCAAAAGGTTCAGCCTCAAGCACCAGCTGGAGACCCACTACCGCGTACACACAGGTGAGAAGCCATTTGAGTGCAAGATCTGTCACCAGCGATCCAGGGACTACTCTGCCATGATCAAGCACCTGCGCACCCACAATGGAGCGTCGCCCTACCAGTGTACCATCTGCCAGGACTTCTGCCCCAGCCTGGCAGCCATGCAGAAACACATGAAGAGCCACAGACCCGAGGATGTGCCCCTGGACTGGAGGATAGAGAAGACCTACCTGTACGTATGCTACGTCTGAGTAGGACTTAGACACTAAGACACACTATCCTATGTGTGGGCAGGTTTTTCATCTTATTATTTCCTCTAAAGAAAAGTAAGTTGATCATTTCTGTGGTTTGATTGCTTTTATCACGAATTGCCACAATGATCTGTCATTACATTAAACCTCCATATGTTTTGAAGGCTGAAAGACTACTGGTCAGGTTACCACAGCAGTGAAAGTGTTATCTGTTATTACATTAAACCTCCATATGTTTTGAAGGCTGAAAGACTACTGGTCAGGTTACCACAGCAGTGAAAGTGTTATCTGTTATTACATTAAACCTGCGTATGTGTTGAAGACTGAAAGACTACTGGTCAGGTTACCACAGCAGTGAAAGTGTTATCTGTTATTACATTAAACCTGCGTATGTGTTGAAGGCTGAAAGACTACTGGTCAGGTTACCACAGCAGTGAAAGTGTTGCACTAGAAGGGATATTGAGTTCTATCTGCTGTGACTCTGATTGTGAGACGTAGAACTTCTCTGGTCGAATTGCAGTACTATTGCAACCCTTACTACGCAGATTGGTTGAGACAAACAAACATTTCCTGGGTTATTATTTcctgtcacatttcctgttattGATTTTTTGGGGTGTTTGTTTTTTGCATGTTTTACTTGAATGGTCTCCATAAGCTTGATTTAATTTGTGTCTTATTTTTCCAGTGCGCATATTAAGCATATAATTTCCCCTACCTGTCAGTTAGTCTATCTGCTCATGCTGATTGACAAGCATTAAGGTGTAACAGGTTTTGCTATTTATGTCATGCATCGATTTTGTTACCAAATAGGTGTTGGTTATTTTTACCCAACCTCAAGGCCGTTTATTTTGATATTAGAATAAGCGCTACCTCTTCGATCTTCAACTTTTGCACAGAGGCAATAGCACATCTTAGAACTGGTGTTTTTCATTGTGTTTTCGTCCATCGTCTGTAGCTTTACCTTCAAATGTCCTTTTTATATTGGTGAAGCGGCTTGAAATGTTCTGAGAATTCATCAATGGAATTGATTTGGACGGTTGCCTGTTGGGTGGAAAAAAAGATTTGAAAGCCTTCAAAGTGACTTTTGTGTGAATCATTTTTTTTATCAGTAGAATTATAGCAGTCTGTTAAACCACAGAATGAAAACATTTTCTAAGTGAAAAGAAAGAACATGTGAGTAAAAGTGTTGTCTTTTTACTAAACGTGAAAGGTTGAATCACTAAAAGCAGGTTATGGTCAGTTGTGATGTCTGTTGCTGTAGATGTGATTGTATCTTATTCCTAGACGAGAGCCAAAAGAGGGCTTCTCTGATTTTAAAATGGTGTATTTTTGTATTACAGTGATCTGCAATTTgtttacatttgttttgatttcagAAACATCTTTTCTTGTGTGTTTTGTAAGTCTCTGGAGTCTGATTTGAGTAAGAGCCCTCCCTGTGCCTCTTTTATAAATGGAGAATAGATGTGCTGAATACATGAATACAGTATATGTTTGTTGTGTTGACCTTTGTGGTTCCTGGGTGTTTGTTTATTGTTGGTGAAGAACTGATTTTCACTGCCATGCCATAGTAGACCCTATTGTCTAAACATTGTCATTTGAAACAAGATACTTGTTCTAATGACTATGGTATTATGCCCCAGGCACCTCAAGCCTCAAAGCAAAGTTTACGAGTGAGATTTTCTTTCAAAATGTTCTGTCTTGTCGAATGGGGATAAAATGCACAGAAGACACAGAATACATAGTGGTATTGTTAATAACCTTTATAAAGCTACAAGTTCAGCATATATGGGTCAATGTAACACTATGGCCTTCTAGAACAAAAAGCCAACACTCAATGCCATGTAAACAATTAAAAGCACCGACTCATCCTCACTGTactactgttctattctacataCACATGCACTATAAGGATCTTAGGATTTCCGTGGTGGACCAAAACTAACAAAGCtctttcaaaaaagtattttcttTGATCGTTCTATGTTGTAACAAAGCAGAAGTAGTTTTATTTGGTATGTGTACTAGCAGGATGTGATGATCATCATGTAGGTAGATATTATGTAAATGTTTGTCTACCTCAGCACCAGTTCAGTCAGTGCTTGTCCTGGTGTCCAATCAGGGTTGTTCTCCTTGCCATGTGTGTTAAATCCCTTTGCATTACAGCTTTGTAACACTGTGTGTGCAAGTGTTTTCTCAGTGTGGATTCAGACACAGCTCTTTTTACGCATCAGTGTTCTGTGGCATGatgaaaaaataataaaatagaaaCTATTTTACAGTG
>TU2185655
GTTTGGAGCGGGTTCTGTGAAATGCCTTACCATGATGTTGCCTGAATGATAACGCAATCGGCTGAGTGAGGACGTAACAGGCCGCTAAGACTTATAGACACACTGAAGGAAAAGCAGGTGGGATAGAACACACCTCATGCGTGGGCTCAGAGAGGGTCCGAGGCTGTACGGATCATCTGACTAAGATGGGTGTTCTCCAGCTCCACAACCCCACCCTCCCCGCCACGCTCCTGCACAGGGCCAATCATATGCGTCTGTCGGGAACGCTGTGTGACGTCATCATCACGGTGGATGGCCAGGAGTTCCCGGCCCACCGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582628.2 False 4477 mRNA 0.47 7 19911119 19941312
TU2185655 True 317 lncRNA 0.56 2 19938982 19941263

Neighbor

gene id symbol gene type direction distance location
LOC118944068 LOC106581084 coding downstream 1318 19907159 ~ 19909801 (-)
LOC110503955 LOC106613029 coding downstream 6349 19897004 ~ 19904770 (-)
pih1d2 pih1d2 coding downstream 14226 19894090 ~ 19896893 (-)
nkapd1 cssa09h11orf57 coding downstream 47094 19860839 ~ 19864025 (-)
gmfg gmfg coding downstream 322022 19586910 ~ 19589097 (-)
LOC110503959 ncam1 coding upstream 580 19941892 ~ 20059903 (-)
LOC110503963 LOC106613022 coding upstream 337680 20278992 ~ 20324314 (-)
LOC110503964 LOC106613021 coding upstream 388681 20315054 ~ 20405167 (-)
LOC110503968 NA coding upstream 514024 20455336 ~ 20458492 (-)
LOC110503970 LOC106613014 coding upstream 541953 20483265 ~ 20552148 (-)
G1911069 NA non-coding downstream 99291 19811544 ~ 19811828 (-)
G1910997 NA non-coding downstream 217774 19693105 ~ 19693345 (-)
G1910977 NA non-coding downstream 248116 19662714 ~ 19663003 (-)
G1910974 NA non-coding downstream 255376 19655525 ~ 19655743 (-)
G1910971 NA non-coding downstream 262865 19648040 ~ 19648254 (-)
G1911307 NA non-coding upstream 145313 20086625 ~ 20086833 (-)
G1911321 NA non-coding upstream 154908 20096220 ~ 20096449 (-)
G1911721 NA non-coding upstream 286316 20227628 ~ 20229328 (-)
G1911744 NA non-coding upstream 318065 20259377 ~ 20264263 (-)
G1910996 NA other downstream 219606 19691066 ~ 19691513 (-)
G1910651 NA other downstream 419511 19490717 ~ 19491608 (-)
G1910539 NA other downstream 577894 19332841 ~ 19333225 (-)
G1910398 NA other downstream 748961 19160449 ~ 19162158 (-)
LOC110503944 LOC106612932 other downstream 937889 18968062 ~ 19185772 (-)
G1911862 NA other upstream 519356 20460668 ~ 20461437 (-)
G1912470 NA other upstream 1031367 20972679 ~ 20976236 (-)
G1913665 NA other upstream 1922276 21863588 ~ 21864274 (-)
G1913663 NA other upstream 1929941 21871253 ~ 21872149 (-)
G1915836 NA other upstream 3810531 23751843 ~ 23752463 (-)

Expression


Co-expression Network