LOC110503968


Basic Information

Item Value
gene id LOC110503968
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 20455336 ~ 20458492 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039334.1
acacacacacacacacacacacacacacaaagcagatGTTGAGCTGTTATCTACAGTTCTGCAACATACAGCAGTCACACCATGTTGCTCAgtatagtcacacacacacaaacacacaaagcaGATGTAGCAAGCAGTTGTTTAATCTCATGATGAAGCTCAAGTGCACAAACGCAGATACCTCACACAGCCAACATCAgataatatttaatcatatatatgttaatggctataatgtaaaacaCAGAATCCCATAACACtcctacgataagtgccatgggatctttaatgacctccgAGAGTCAtgacacctgtttaacgtcccacccgaaagacagcaccctacacagggcagtttTAGAATTATATTAATTACATTATATTAACCCTCCAACACCACTCTCcagccctccaacaccacttccagcagcatctggtctcccatccaggaagtGACCAGGACCAACCATGCTTAgcatcagaagcaagccagcagtggtatgcagggtggtatgctgctggcattaCTCTACCAACGATTTGAACCCTAAAATGCTCATGGAACTTACGCATGAAGCTCTTCCTCGTTTCTGTGTGCTGTTCAATATTAAACGACATTTTCTGCCAATGCATAAACTCAGTATGGCAACTAGAGAACGTTCCAACGGCCGCCATGTAGGTCACTGGTTATATCACGCGGGTGCTGTAGTTCCGTAACATAAGATAAGTGTAGTTCTTAGATTGTGCAGGTCCTGGTTAGTTTTCTTCGATATTTTTTCAGGTGAAAGGCACATTTTTCTCGTAATTTCATTAACCACCGAAATATACCCTAAGGTAAATTGCTTGCTTAAACCATAGACATTAAGGAGGCCTAAACAGAGAAATCAAACTTAAGCAAACTGTTTCTACATCAAGTGCCTTGAACATACGTCACTAGCGCGGGAGTTATTCATTATTCAGCGTCCTTCCTTTTGCAGTGTTCTGAGTTTAATGACGTGACCACTTCGATTCGCATGTTTATAACATACCAGTAAATAACAATGTAATCCTTTGCATAATTAACTGATTTAATGAAACACGTTCTTCATTTGCTTTAAATCAAATGTCACCTACTGTCACGCACACAGAATGGTTAGGCATCATTGGAATAGGACTTAAAGGTTCAATTTCTTCCAAGCCAACCACTATTTCGTAATCTCTCAGACATGCCACATACAATGAGAACTCGTGGAACCACAAGAAAACTACAATCCAGCAATGACGAAGAGACAAAAAATTGTGCCCGCAGTGAGGATTCCCTATTGGAGATTGGTCAGGCAGTCCGGGGGGAAGGGGAAAGGCTCAGATTGGAAGGTTGGGGGTTCAATCCCCAGTCAAGTTATACCAAAGACTCAAATGGGACCTGATGGATCTGCTAGGCTTTCAGCACTAAGGAAATGGAttggggGATTTGAAGACTCTTCCCAACCAAACTGGTTGTTGGGATGTTTGGAACTACCGGGCCTGTAACTTCATGCGAGACATGAAAGCGGGGCAGCAAGTATTCTTCTAGCACAGTAACTGAAAGGAGCATTGAATATCTACGAGTTATGAAGATTGTAAAGGAGTCCTATGTGGACCACAGTCAGTTTGACAAGACAGGTGTCCATTACGACACCTCCAGCCAGGCAGACAACCCCAGATGGAGTATGATATGAATGATTTCATGTTtacatttgtttgtgtttcaAATGGCTGGAGATCAAGATACATCACTGATACGTAACAGGCTTTTTTTAAATCCAATTTAGACTGTACTAGTGCTCTGCTGGCTTGTTTCATGTGTGACTGCCAGGTTGGTGTCCAGTTTGAGAGGATGTTGAAGTACTTCATTCCTCTGTCTGAGTTGAAGAAGACCCACCTGCAGCACAAGGCGCGCCCCTGAATGGCTCTCTTCACCAGGGCCAGGCTGTCTGTCCAGCCCCTCACCAGTGGTACGTGGAGATCAGTGACACTGAGTAATATGGTTGTCAAATCTCCACCTCATCCTATTTTACAAAGCTTTTGTCTAAGTAAAATCATATATTAAAATGAGTTTGGAGGACAAAGACCCACTGTGAAGATTTGGACAAGATGATGCTGCTAATATGATGTTTACTGTCTATTGAACCATTGTGCTTGTATTGAATGAAAATTGGCTCAAGGTTTCTGTTTGTCAAACACCCTGGAGTTCATTTCTAATATTAAATGTTTATATTAAGACA

Function

NR:

description
thymocyte nuclear protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039334.1 True 2243 mRNA 0.42 5 20455336 20458492

Neighbor

gene id symbol gene type direction distance location
LOC110503964 LOC106613021 coding downstream 50169 20315054 ~ 20405167 (-)
LOC110503963 LOC106613022 coding downstream 131022 20278992 ~ 20324314 (-)
LOC110503959 ncam1 coding downstream 395433 19941892 ~ 20059903 (-)
LOC101268962 LOC106581153 coding downstream 514024 19911119 ~ 19941312 (-)
LOC118944068 LOC106581084 coding downstream 545535 19907159 ~ 19909801 (-)
LOC110503970 LOC106613014 coding upstream 24773 20483265 ~ 20552148 (-)
LOC110503972 LOC106613013 coding upstream 208389 20666881 ~ 20676630 (-)
LOC110503975 LOC106613012 coding upstream 239269 20697761 ~ 20724730 (-)
LOC110503976 NA coding upstream 266416 20724908 ~ 20752174 (-)
LOC110503985 NA coding upstream 475982 20934474 ~ 20941504 (-)
G1911841 NA non-coding downstream 4687 20449483 ~ 20450649 (-)
G1911842 NA non-coding downstream 6532 20448340 ~ 20448804 (-)
G1911844 NA non-coding downstream 26767 20428223 ~ 20428569 (-)
G1911744 NA non-coding downstream 191073 20259377 ~ 20264263 (-)
G1911899 NA non-coding upstream 69211 20527703 ~ 20534902 (-)
G1911907 NA non-coding upstream 81080 20539572 ~ 20539865 (-)
G1911914 NA non-coding upstream 88612 20547104 ~ 20556966 (-)
G1911949 NA non-coding upstream 118441 20576933 ~ 20577218 (-)
G1912018 NA non-coding upstream 180234 20638726 ~ 20638954 (-)
G1910996 NA other downstream 763823 19691066 ~ 19691513 (-)
G1910651 NA other downstream 963728 19490717 ~ 19491608 (-)
G1910539 NA other downstream 1122111 19332841 ~ 19333225 (-)
G1910398 NA other downstream 1293178 19160449 ~ 19162158 (-)
LOC110503944 LOC106612932 other downstream 1482106 18968062 ~ 19185772 (-)
G1911862 NA other upstream 2176 20460668 ~ 20461437 (-)
G1912470 NA other upstream 514187 20972679 ~ 20976236 (-)
G1913665 NA other upstream 1405096 21863588 ~ 21864274 (-)
G1913663 NA other upstream 1412761 21871253 ~ 21872149 (-)
G1915836 NA other upstream 3293351 23751843 ~ 23752463 (-)

Expression


Co-expression Network