LOC110503970 (LOC106613014)


Basic Information

Item Value
gene id LOC110503970
gene name LOC106613014
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 20483265 ~ 20552148 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582661.2
TAGAATAGCCCAATGTGGTTTCATAGCTTCGTAGAGTCTCTGAAGACATAGAGGACTATTTCGACATCAATCATACATCTCCCCACATGGGCCAGCGGAATAATGTGTCCACTTTGGGGTGGCAAAGGTTTAATAGTCTTATCTTATTCGCCCCATTCTCATGAACAAATTGATATGATACCCACTCCAAAAAAAGTCGCTTTCTATGTTTTTCACACCTGTATATGTATGGGAGTCTATGATATGCTAAGTGACTGAAATACACCAGTTCTGTGTCTGTAGAGAAGATCTGTTAGCTTCTACCATTCAAAAGTTAGAGCCAGATTTGTAGAATGAAAACAAAAACCATTGAATATTTGTCACACCATCGCAGCAGCTCAAAAGATTCAGGGTAGACCCAAAAGCCAGGTCCTGGTGAATCTCTGTAATGCTGTATTCCATTACCTTTTCCTCTCGTACAACCTCAATGCCTGTATCCAACCTCGCCAATGTACACGGTTAAAGACATGAAAAATTGTGATCTAAAATCAGCTAAGCTGGTCAAATATGTTTTTCTCTCTGAAGTGCTCTTCCTTAAGGTTTTTTTCCATTGATTAATTTATAAtgtgatgagagagtgagagagagagacagaccatacCAGTAATGTATGTGGTGGGAGTTAGAGCCCATGTTTGCATACAGAATCAATTTGAACACAGTCAAAACTTTAGAGGAATTAAAGCTCCTGTGTTGCGATGGCATACTCAAAATGGTTTAAAATAGCTTCAGAGATTACGCTAATGTAATCCAATTTAAAGGAGCCGCCTCCAAATATTTATTATTTAAGCACCATCTGTTTGAAGCCCCAGGGGTCAGCCACAAACAGTATATGCACAAAGTCTTCCACAAAGAGGGCTATCTCATTGTCCTACATCACTAACTGCCTCTGCACCATCCAGAACCCAACTCACTCCTCATATATCCTCACTTTACCTTAATCCTCTTTTTACATAGCCAAACACAGGCTTAGCTTTGTGGACTGGGTACTGTGTCAGGACACGTTTTGTAACGAAGCCTCATATTTTCCCATCATTGAATGCCTCTCAGTCTGAGATGTACATCGGTCACGGCCCATTTGTAAACTGTAGCCCCCCCTGCCACTCACTGTGCTGTCAGACAGTCTTTCCTAGTCATTGCCCTGTgaatccttccctctctcctgtgaAGACCTTCAGCCCCTCCGGAGCGTGCTACTGCAACTTTCACCAGCAGCTTCAGATTAGTGGTTCATTTGAAGGCTGACTCAGTCAGCACAGGAGGGATAGTGGGGGCTGTGCTGCAGCTTGAACACAGGACCCTCAGGAGATAAAGACTACGGTGAAACGAGAGATTATAGTGAAAGATAAGTGGTTCTGTTTAATGAGAGTTGGTTTATCTTCTGCCCGCGGCTGGAGGGTGGGCATGGTTGTGTGTTTCAACTGGGGACTGGAATCATTTGATTGTCTTATAAGCAGTTTGTATTTTTCAAGGAGCCTATGTTGTACTGGTGGTGTTTAAAACATAGGGAAtatccatttgttgtttttcATTGGATTTCAGATGTTAAGCCTATATTTGAACATACTTGCATTGATATCATTTAATTATTATCATGGATTATTATTGGGTAATTGATCATCTAAAAATGGAGGCATTAAACATtttgcctggctacccatccaCGTCGCTCCGGCCAAATGCCACGCCCACTAACGTTTCTTCTCCACGATGAGTCTGGATTTGATCTCCTCCCCGAAAACTTCTCAAATGCCAACACATTCAAACTGTTTTGATTGATCCCTGAAACctatgggttgggccagagcctgAACACACATAGGTAGAGCTTCGTTTTGGAAGTAGTCATTGGCTTTGGTACTCTAATTGATTAgacgatccaatcgctgatgacttgTTTTGTACAACTCCCCCTCATTTTGACTTCAGCAGAAAATGACTTCTATCATTGCAGTCTAGCGATAGGTGGAGCATTGGACTTAAATTCAGTATGAGTCATCAGGCTACTAAACATTGGCATTTGATTTTAAATGACTCCACTACATCCATGTGATTCTAGTCTGTTGCTTAGTTGGTGATTATCATAAAGATTTGCTGCCCCCTCTAGGCTGCTCATGGTAAGTGACATATTCTCAGTGGGCTCTATTTTGAGCACCATCTTGGTAGCCTCATTCGACCATCCTGATGGATCCTGACAGTTTTTGCTGAGATATTTTTTCCATAGATTTTAGAACTCTCCAAAAAGGCTCTCTATACTAATGTCTATCATACATTTTTGGGGAACAATGAGTTTAGTTGTATTTCAAAGGCAGAGATGCatctttttgtattatttttaaacACCCATATTATTCATGTAAAAACATGGTAGTTATTAAACAATCCAATTGACAGTGATGCCCCGCCTACATTGTGTTCTACAGTGGCAGCTTTTCAAGGGTTTATCTGTTGATGGATGTAGATTAATGATACCCATATCCACACTTTCCAGTGTGTCTCATCTGTCTGCAGCAAGACACAACCCAGATGGAGAGTGGAGACAGGGATTAGGGAAGATTTTCCTTCATTTAATAAACAATTGAATGGCACAGTTCGGAGGATAAACCTAGCCCAAGAAAAAGCAGTAAGAATAGTCACGGGAATATAGAGCATTAAGGCGCAGTGTATCATTTAAAAGAACCATTCCCATTCATCATCATTCTAATCTACAACACAGTCCAATACTCCTCCGCATTAGGACACACTGTATTGTTATGCCCAAAAGTCTGGAGGGCTTAGATTTAGCTGCACATACTTGTATAGAATTTTTCCCGTAGGTATGTATCACTCTAAATGACTTTTTTCAAAGTGACGCAATCCATCCTAATCCAGTCACATCCTACATCCGTTTTCCCATAGTAGGAAGAGCAGTTATATATTCCTCATCTGCATCTATATACTCTTAGAAATGTTTTGGGGTTCCATGTAGagtcctctgtggaaatggttctacatataacacaaaagggttctacatggaaccaaaaatggttattcagagttctcctatggagacagccaaataaccattttaggttctagatagccccttttttttctaagagtgtagcactGCTCTTTTCAAACACACAAGATGATGCCCACATTGACTTCCAACTAATGGAATAGCCCACCCCCTCACCTTTAAATCTGCCATCTCAAGCAGAAAAATTAGTTTCTATCCCTAACAGGATTAGCGAGACAAAGTGCAAGCCAAATCAGAAAAAACAATCCAGGGTCTATTATGTTGTGGAATAACAGAATGGCTAATACAATGATGATgctattaaatccacttcagtcagtctgACAGCATCAGCTGTGATTAGTGTTTTGGCAAGTTGGACTTTCATTGGCACAAGAGTAGATGTTGCATTTTCCATTGGCGCATTGGTTCTCATTCGCCTTAGGAATTTCTGTGGAACAACAATCTCGAATAAACTTGTAAGTTCAATGCAAGTTCAAGTTCAGGACATGAATCAAGTAGTTTTATTTAGGCCTATCCGTTTCTGTTAGTATATGTTTTGAAAACCTAAGCAGGCAAAGAAAAGTGATTGAGCTACAAATATGAGAATCCAGTCATACCAACAGTCAGCACAGAGACAGTTGTCAAAGTGACCATGTGTTAGCCTACCTCCTCTGTGTCCAGCCGAGCTGCTGTACTTGGGTCACGTGAAGCAAGAGTCAGGGTTGAAGGATTGAGCCAGGGATTGTTTAGGGATTAGTCAATAGGAGCTTCACGGCAGAAATTAAACAAGGGACACCATAGCAATGGGGTCACATGATACCAGGGGCAATAAGAAAGCATAGAGTCACTGCGACTATAATCCAAGAACAACATGCCAGCCCTGACGCCAGACAGATGCCCagttgctctcgctctctcgttctctcgctctcactcccactcaatcactctcgctctcgttctctctctaatTCACCCAGCTGAATACAGTTTCATTCCAGAAAGAACGTAACCGGTGTGCTGTCACACAGCAGCTGTTGAGCAGCCCCTGGCCTagctaaatgtatgtgtgtgtacggaCTTGACCGTCttgctgaatgtgtgtgtgttttatgtttgTGTTTATTGTGACTGGGGGTTAAGACCCTCCTCTTATAGGgctagtgtttttgcggactagGGATTTGAGACCCTCATCACGTCACTCTGAGggggttgtctgtgtgtgtgtgtggagaggggttattctgtgtgtgtgcgtgggacCTAGCTCCAAGCTGGCGGAGGGCGAGGACTACGATTGCTGGGATCAGATGATCCATCTTCAGCTGACCAGCTCAGGGGACTGGCCGGCACCCTGTGACTCCCAGCGGGTGGAGATGcccaggagagagatggaggtggtGAAGGGTCAGATGGTGGTCCTGCAGGCTTGGTACAGCCCCACATCTGATATCGGCAGGAACAGTGTCATCTGGAACTTCATGGCCAACGACTCCAAGCAGGTCATCTCCTACAGTAACGGTGAGCCAGGGATCGGTAGTCCTGAGTTCAGGAAGCGTGTTGGGTTCAGCCTGTCCATGCCCTCGGCCAATCTCTCCATCTACATCAACAACACCCAGGAGTCAGACTCAGGACGATACCTCTGCAATGTCATCATCCCTGGAGCCGCCGGACTCTCTGGAGAAATGCGCCTTAATGTCAAAGtcCCTCCCTCGCCTCCAGTGTGCTTGATGACTGGGTCATCTGTGCTGAACGGCAACGTGACACTGAGCTGTAAGTCCAGCTCGGGCAAACCCATCCCTCAGTACAAGTGGACCAAGAATGCACCCATGTCAGAGGTCTTCTTTTCCCCCATGCAGAatgAGAGGCAAGGCACCCTCAGGCTGAGTAACCTCACTAAGAGCATGTCAGGGAAATATGTGTGCCGAGCTAGCAACACTGCCGGCTCTGACACTTGCTCTATCAACCTGGAGGTCTTCACCTCCTCTAATGCTGGAGCGATTGTTGCTGCTACTCTGGGGTCCATCGTGGCACTGGTAGCCATCGTACTCTTCCTCATCTTCATACTGAGGAGGAGAGACCATGAAGAGGAGGAGCTAGCCAATGATATCAAGGAGGATGCCCAGGCACCCAAGCGTGTTTCCTGGGCAAAGAGCGGCACAGGCTCAGACCTCCTCTCCAAAAATGGCACGCTGTCCTCCATAGCCACGACCCCGCATCTACGAGACCCCCAGCAGCCCAACAACTTCCGCTACCCCTACCCCACTGCTCCGGCCTCTGACACAGGCTCTGTGTTCAATGCCTACCGCCTTCAGCCTGGAGAGCCCAACCCCTTGCAGGGCCTCCCAGGGTACATCAGTGGCACACCTCCACCCAGGCACACCAGACCCCTCTGTGTTGCAAACAACATTGATGCCACCTCTCCACACAGGCACAGTCGACCCCCCAGTTCTAACCACATCAGTGGGACTCTACCCCCTGGCCACACCCGGCCCCTCAGCACTAGTATCATTGTTGACACCCCTCCCCATGGGTTCAGTCAACCCCCCAGTCCTAACCATGTTGGTGTCACCTCTCCACATGGGCACGGCAGACCCCCTAGCTCTAACAACATTGGTACCCCCTCCCCACATGGGAACAGTCAACCCCCAAGTTCTAACAATATCGGTGCCCCCTCTCCACATGGGCACAGCAGACCACCAAGCTCGAACCACATTGGCGGTAGCGCTCTACACAGGCACAGTCGACCTCCCAGTTCCAACCACAGCCGACCTCCCAGCATCAGTAGCATTCCTCACTATGGACACAGCAGAACCTCCAGTTCCAACGGTGCCCCACCCCATTCCCCACCTGGCCACATGGTCACAGACCCCGACAAAACTGAGGGCGCCCAGCCCCAGGTGCCACACCCTCTCACCTCGCCAATCAGCTCCACCACCCTGGCCCGTATAGGTGCTGTGCCCGCTCAGAGCCAGGCTGGATCACTGGTATAGCCCACTGGAATGTCTCACATTTTACTTTTGAACACAAACTGAAGCAAATGGATAAAGACTTCCTCAAAGTAAGACTGTATAGAGGAGAGAAGGATTTGCTAcaaattaaaatcactttttATTGCAGTTGTTCAAAGTAGAATGAAGAACTCATGCTAAAGAAGACAAATGAGAAATTATGACACTTGTGGAATCGACTGTATTCAAGTCTGCACAAGTTCAAAGACTTGTTTTAGCTGTTTTCAAATACCATTATCAGAGTCTTTAAGGTTAAAACAAGGCCTATTCTCTAAAACATTGTTTGTGAATCCATATTTTTGACttagtcatggccaaaagttttgagaatgacacatgaATTTCCTgctacagtgtctttagatatttttgtcggatgttactatggaatactgaagtataattacaagcatttcataagtgtcaaaggcttttattgacaattacaggaa
>XM_021582660.2
GTGCAGGCGGGCAGGTGACCCGTTATAACTGTCCACTTCGAGGTTAAGGAGGGGAGACTACTGTCTACATTTCaactctggagagagatggaaagcaGCACACATGTAAGGTTTTCAGGAGTAAAGTCAAGGGAAACAGAGCGTCGATTTCTCGACAAATGGTTTCTTATTTGACCGTGTACGGTGGAAGTGTACCAGCGCCAGTTCTCTGTAATGTTTGCTCGGCGGACGggaaagctgaaataattcataAACTATTACCTTTCTATACTGTCTAAGTTCTGCTTCCCGCGTTCACTTTGGCCAGAAGTGGAGCGGATGAGAGCCCACTGAACAGGAGACGAACTTCAAAAAGACAACAGACGCCCACTCCCTTTGTAGACAAGTTTGCTATTTGTCTTGCACAGGGCACGTGCGGTTCATGTTGGGCAATGGCGATGTCTGGGAGAGTCCGAGCGCTCCTGTTATTGTTGTGGATTTTTCAAGGTGACTCCCAGCGGGTGGAGATGcccaggagagagatggaggtggtGAAGGGTCAGATGGTGGTCCTGCAGGCTTGGTACAGCCCCACATCTGATATCGGCAGGAACAGTGTCATCTGGAACTTCATGGCCAACGACTCCAAGCAGGTCATCTCCTACAGTAACGGTGAGCCAGGGATCGGTAGTCCTGAGTTCAGGAAGCGTGTTGGGTTCAGCCTGTCCATGCCCTCGGCCAATCTCTCCATCTACATCAACAACACCCAGGAGTCAGACTCAGGACGATACCTCTGCAATGTCATCATCCCTGGAGCCGCCGGACTCTCTGGAGAAATGCGCCTTAATGTCAAAGtcCCTCCCTCGCCTCCAGTGTGCTTGATGACTGGGTCATCTGTGCTGAACGGCAACGTGACACTGAGCTGTAAGTCCAGCTCGGGCAAACCCATCCCTCAGTACAAGTGGACCAAGAATGCACCCATGTCAGAGGTCTTCTTTTCCCCCATGCAGAatgAGAGGCAAGGCACCCTCAGGCTGAGTAACCTCACTAAGAGCATGTCAGGGAAATATGTGTGCCGAGCTAGCAACACTGCCGGCTCTGACACTTGCTCTATCAACCTGGAGGTCTTCACCTCCTCTAATGCTGGAGCGATTGTTGCTGCTACTCTGGGGTCCATCGTGGCACTGGTAGCCATCGTACTCTTCCTCATCTTCATACTGAGGAGGAGAGACCATGAAGAGGAGGAGCTAGCCAATGATATCAAGGAGGATGCCCAGGCACCCAAGCGTGTTTCCTGGGCAAAGAGCGGCACAGGCTCAGACCTCCTCTCCAAAAATGGCACGCTGTCCTCCATAGCCACGACCCCGCATCTACGAGACCCCCAGCAGCCCAACAACTTCCGCTACCCCTACCCCACTGCTCCGGCCTCTGACACAGGCTCTGTGTTCAATGCCTACCGCCTTCAGCCTGGAGAGCCCAACCCCTTGCAGGGCCTCCCAGGGTACATCAGTGGCACACCTCCACCCAGGCACACCAGACCCCTCTGTGTTGCAAACAACATTGATGCCACCTCTCCACACAGGCACAGTCGACCCCCCAGTTCTAACCACATCAGTGGGACTCTACCCCCTGGCCACACCCGGCCCCTCAGCACTAGTATCATTGTTGACACCCCTCCCCATGGGTTCAGTCAACCCCCCAGTCCTAACCATGTTGGTGTCACCTCTCCACATGGGCACGGCAGACCCCCTAGCTCTAACAACATTGGTACCCCCTCCCCACATGGGAACAGTCAACCCCCAAGTTCTAACAATATCGGTGCCCCCTCTCCACATGGGCACAGCAGACCACCAAGCTCGAACCACATTGGCGGTAGCGCTCTACACAGGCACAGTCGACCTCCCAGTTCCAACCACAGCCGACCTCCCAGCATCAGTAGCATTCCTCACTATGGACACAGCAGAACCTCCAGTTCCAACGGTGCCCCACCCCATTCCCCACCTGGCCACATGGTCACAGACCCCGACAAAACTGAGGGCGCCCAGCCCCAGGTGCCACACCCTCTCACCTCGCCAATCAGCTCCACCACCCTGGCCCGTATAGGTGCTGTGCCCGCTCAGAGCCAGGCTGGATCACTGGTATAGCCCACTGGAATGTCTCACATTTTACTTTTGAACACAAACTGAAGCAAATGGATAAAGACTTCCTCAAAGTAAGACTGTATAGAGGAGAGAAGGATTTGCTAcaaattaaaatcactttttATTGCAGTTGTTCAAAGTAGAATGAAGAACTCATGCTAAAGAAGACAAATGAGAAATTATGACACTTGTGGAATCGACTGTATTCAAGTCTGCACAAGTTCAAAGACTTGTTTTAGCTGTTTTCAAATACCATTATCAGAGTCTTTAAGGTTAAAACAAGGCCTATTCTCTAAAACATTGTTTGTGAATCCATATTTTTGACttagtcatggccaaaagttttgagaatgacacatgaATTTCCTgctacagtgtctttagatatttttgtcggatgttactatggaatactgaagtataattacaagcatttcataagtgtcaaaggcttttattgacaattacaggaa

Function

NR:

description
endothelial cell-selective adhesion molecule-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582661.2 False 6512 mRNA 0.45 7 20483265 20501137
XM_021582660.2 True 2593 mRNA 0.51 7 20483265 20552148

Neighbor

gene id symbol gene type direction distance location
LOC110503968 NA coding downstream 24773 20455336 ~ 20458492 (-)
LOC110503964 LOC106613021 coding downstream 78098 20315054 ~ 20405167 (-)
LOC110503963 LOC106613022 coding downstream 158951 20278992 ~ 20324314 (-)
LOC110503959 ncam1 coding downstream 423362 19941892 ~ 20059903 (-)
LOC101268962 LOC106581153 coding downstream 541953 19911119 ~ 19941312 (-)
LOC110503972 LOC106613013 coding upstream 114733 20666881 ~ 20676630 (-)
LOC110503975 LOC106613012 coding upstream 145613 20697761 ~ 20724730 (-)
LOC110503976 NA coding upstream 172760 20724908 ~ 20752174 (-)
LOC110503985 NA coding upstream 382326 20934474 ~ 20941504 (-)
LOC110503987 LOC106613003 coding upstream 398770 20950918 ~ 20961641 (-)
G1911841 NA non-coding downstream 32616 20449483 ~ 20450649 (-)
G1911842 NA non-coding downstream 34461 20448340 ~ 20448804 (-)
G1911844 NA non-coding downstream 54696 20428223 ~ 20428569 (-)
G1911744 NA non-coding downstream 219002 20259377 ~ 20264263 (-)
G1911949 NA non-coding upstream 24785 20576933 ~ 20577218 (-)
G1912018 NA non-coding upstream 86578 20638726 ~ 20638954 (-)
G1912300 NA non-coding upstream 100375 20652523 ~ 20653588 (-)
G1912301 NA non-coding upstream 102183 20654331 ~ 20654537 (-)
G1912302 NA non-coding upstream 102815 20654963 ~ 20655504 (-)
G1911862 NA other downstream 21828 20460668 ~ 20461437 (-)
G1910996 NA other downstream 791752 19691066 ~ 19691513 (-)
G1910651 NA other downstream 991657 19490717 ~ 19491608 (-)
G1910539 NA other downstream 1150040 19332841 ~ 19333225 (-)
G1910398 NA other downstream 1321107 19160449 ~ 19162158 (-)
G1912470 NA other upstream 420531 20972679 ~ 20976236 (-)
G1913665 NA other upstream 1311440 21863588 ~ 21864274 (-)
G1913663 NA other upstream 1319105 21871253 ~ 21872149 (-)
G1915836 NA other upstream 3199695 23751843 ~ 23752463 (-)
LOC110504083 NA other upstream 5611317 26163462 ~ 26165289 (-)

Expression


Co-expression Network