LOC110503972 (LOC106613013)


Basic Information

Item Value
gene id LOC110503972
gene name LOC106613013
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 20666881 ~ 20676630 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582665.2
GCCCAGTTTCTGCGAGAATATTGTAGATGCGGAAACCTTCGGTACTGTTCAGGGTGAAGCTACATTTTCTGTCTGATTTCTTATCTTTAATAAGACACCATGTCAAAGGGACCAGCAGTTGGCATTGACCTGGGCACCACCTACTCATGTGTGGGTGTGTTCCAGCATGGCAAAGTGGAGATCATTGCCAACGACCAGGGCAATAGGACCACACCCAGCTACGTCGCCTTCACAGACACAGAAAGGCTGATTGGGGACGCTGCCAAGAACCAAGTGGCCATGAACCCCACAAACACAGTGTTTGATGCGAAGCGGCTGATTGGGCGGAAGTTTGACGACAATGTCGTCCAGGCAGACATGAAACACTGGCCGTTTACAGTGATCAACGACTCGACACGGCCCAAGGTCCAAGTGGAGTACAAGGGGGAGACCAAGGCCTTCTACCCAGAGGAGATCTCCTCCATGGTGCTGGTCAAGATGAAGGAGATTGCAGAGGCCTACCTGGGCAAGACTATAACCAATGCAGTGGTCACTGTGCCAGCTTACTTCAACGACTCTCAGCGCCAGGCCACCAAAGACGCAGGGACCATCTCAGGTCTCAACGTACTCCGCATCATCAATGAGCCAACCGCTGCTGCTATCGCCTATGGCCTGGACAAGAAGgTGGGAATGGAGAGAAATGTCCTAATCTTTGACCTGGGCGGTGGTACGTTTGATGTGTCCATCCTGACCATCGAAGACGGGATCTTTGAGGTGAAGTCCACTGCCGGAGACAcccatcttggaggagaggactTCGACAACCGCATGGTCAACCACTTCATCTCAGAATTCAAGCGCAAATACAAGAAGGACATCAGCGACAACAAGAGGGCAGTGCGTCGTCTGCGCACTGCCTGTGAGCGTGCCAAGcgcaccctctcctccagcaccCAGGCCAGCATCGAGATCGACTCTCTGTATGAGGGTGTCGACTTCTACACCTCCATCACCAGGGCTCGCTTTGAGGAGCTGAACGCTGACCTGTTCAGAGGCACCCTGGACCCCGTTGAGAAGTCTCTTAGGGACGCCAAGATGGACAAAGCCCAGGTCCACGACATTGTCCTGGTGGGAGGCTCCACGCGCATCCCCAAGATTCAGAAGTTGCTGCAGGACTTCTTCAACGGGAAGGAGCTCAACAAGAGCATCAACCCTGACGAGGCTGTCGCCTATGGTGCAGCTGTCCAGGCGGCTATCTTGTCCGGAGACAAGTCTGAGAACGTGCAGGACCTGCTGCTGCTGGACGTCACACCTCTGTCCCTGGGCATTGAGACGGCCGGAGGGGTCATGACTGTGCTCATCAAGAGGaacaccaccatccccaccaaGCAGACGCAAACCTTCACCACATACTCAGACAACCAGCCTGGGGTGCTCATTCAGGTGTATGAGGGGGAAAGAGCGATGACCAAAGACAACAACCTACTGGGGAAGTTTGAGCTGTGTGGGATCCCACCAGCCCCCCGGGGTGTGCCTCAGATAGAGGTCACCTTTGACATTGATGCCAACGGCATCATGAACGTGTCCGCCTCTGACAAGAGCACTGGCAAGGAGAATAAGATCACCATCACCAATGACAAAGgTCGCCTGAGTAAGGAGGACATAGAGCGCATGGTCCAGGAGGCTGAGCAGTACAAAGCTGCGGACGATGTCCAGAGGGACAAGGTGGCGTCCAAAAATGGCCTGGAGTCGTACGCCTTTAACATGAAGTCCACCGTGGAGGACGAGAAGCTCAAGGGCAAGCTCAGCGACGAGGACAAACAGAAGATCATGGACAAGTGCAACGAGGTCATCAGCTGGCTGGATAAGAACCAGTCTGCAGAGAAGGAGGAGTTTGAGCACCACCAGAAGGAGCTGGAGAAGGTGTGTAACCCAATCATCACCAAGCTGTACCAGGGTGCAGGGGGCATGCCCGGGGGGATGCCAGGAGGGATGCCTGGGGCTGGTGGTGCCACACCCGGAGGAGGCGGATCCTCTGGACCAACCATTGAGGAAGTCGACTAAACCATACAGAGCATACTTTTACTCCTGATTGGATATGGCTAAATAGTGGTCCACATTCTATAGCTTGGAATGGTCTGAAACTTTATTTTCACAATCTGCATAGACTACTTATGTTTGTTTTGGTCATTCATCTTTTTATGCTGAAAGCAACCAATCAATTTAATATTTTTCATGGGCACTGTTCTACCTATTGTTAAACGTTTTCAGTTCAACCAGTGAATGGTTACTACTGTATACAGAGCATGTTTTTCACAAGTGGAATTCTGTGACTGCAAAATGTTTTTGCCTTTGTACTGCACTGTTGGCTTAAAAAAACgattaaaaaaaatcacactC
>XM_036961245.1
GCCCAGTTTCTGCGAGAATATTGTAGATGCGGAAACCTTCGGTACTGTTCAGGGTGAAGCTACATTTTCTGTCTGATTTCTTATCTTTAATAAGACACCATGTCAAAGGGACCAGCAGTTGGCATTGACCTGGGCACCACCTACTCATGTGTGGGTGTGTTCCAGCATGGCAAAGTGGAGATCATTGCCAACGACCAGGGCAATAGGACCACACCCAGCTACGTCGCCTTCACAGACACAGAAAGGCTGATTGGGGACGCTGCCAAGAACCAAGTGGCCATGAACCCCACAAACACAGTGTTTGATGCGAAGCGGCTGATTGGGCGGAAGTTTGACGACAATGTCGTCCAGGCAGACATGAAACACTGGCCGTTTACAGTGATCAACGACTCGACACGGCCCAAGGTCCAAGTGGAGTACAAGGGGGAGACCAAGGCCTTCTACCCAGAGGAGATCTCCTCCATGGTGCTGGTCAAGATGAAGGAGATTGCAGAGGCCTACCTGGGCAAGACTATAACCAATGCAGTGGTCACTGTGCCAGCTTACTTCAACGACTCTCAGCGCCAGGCCACCAAAGACGCAGGGACCATCTCAGGTCTCAACGTACTCCGCATCATCAATGAGCCAACCGCTGCTGCTATCGCCTATGGCCTGGACAAGAAGgTGGGAATGGAGAGAAATGTCCTAATCTTTGACCTGGGCGGTGGTACGTTTGATGTGTCCATCCTGACCATCGAAGACGGGATCTTTGAGGTGAAGTCCACTGCCGGAGACAcccatcttggaggagaggactTCGACAACCGCATGGTCAACCACTTCATCTCAGAATTCAAGCGCAAATACAAGAAGGACATCAGCGACAACAAGAGGGCAGTGCGTCGTCTGCGCACTGCCTGTGAGCGTGCCAAGcgcaccctctcctccagcaccCAGGCCAGCATCGAGATCGACTCTCTGTATGAGGGTGTCGACTTCTACACCTCCATCACCAGGGCTCGCTTTGAGGAGCTGAACGCTGACCTGTTCAGAGGCACCCTGGACCCCGTTGAGAAGTCTCTTAGGGACGCCAAGATGGACAAAGCCCAGGTCCACGACATTGTCCTGGTGGGAGGCTCCACGCGCATCCCCAAGATTCAGAAGTTGCTGCAGGACTTCTTCAACGGGAAGGAGCTCAACAAGAGCATCAACCCTGACGAGGCTGTCGCCTATGGTGCAGCTGTCCAGGCGGCTATCTTGTCCGGAGACAAGTCTGAGAACGTGCAGGACCTGCTGCTGCTGGACGTCACACCTCTGTCCCTGGGCATTGAGACGGCCGGAGGGGTCATGACTGTGCTCATCAAGAGGaacaccaccatccccaccaaGCAGACGCAAACCTTCACCACATACTCAGACAACCAGCCTGGGGTGCTCATTCAGGTGTATGAGGGGGAAAGAGCGATGACCAAAGACAACAACCTACTGGGGAAGTTTGAGCTGTGTGGGATCCCACCAGCCCCCCGGGGTGTGCCTCAGATAGAGGTCACCTTTGACATTGATGCCAACGGCATCATGAACGTGTCCGCCTCTGACAAGAGCACTGGCAAGGAGAATAAGATCACCATCACCAATGACAAAGGTAGACTTAGTAGTAGTTacagttaaaggaCAAATCTGATT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0005524 ATP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582665.2 False 2379 mRNA 0.52 9 20666881 20676630
XM_036961245.1 True 1662 mRNA 0.54 8 20671408 20676630

Neighbor

gene id symbol gene type direction distance location
LOC110503970 LOC106613014 coding downstream 114733 20483265 ~ 20552148 (-)
LOC110503968 NA coding downstream 208389 20455336 ~ 20458492 (-)
LOC110503964 LOC106613021 coding downstream 261714 20315054 ~ 20405167 (-)
LOC110503963 LOC106613022 coding downstream 342567 20278992 ~ 20324314 (-)
LOC110503959 ncam1 coding downstream 606978 19941892 ~ 20059903 (-)
LOC110503975 LOC106613012 coding upstream 21131 20697761 ~ 20724730 (-)
LOC110503976 NA coding upstream 48278 20724908 ~ 20752174 (-)
LOC110503985 NA coding upstream 257844 20934474 ~ 20941504 (-)
LOC110503987 LOC106613003 coding upstream 274288 20950918 ~ 20961641 (-)
LOC110503988 LOC106613001 coding upstream 353154 21029784 ~ 21064377 (-)
G1912306 NA non-coding downstream 7719 20658874 ~ 20659162 (-)
G1912305 NA non-coding downstream 8150 20658450 ~ 20658731 (-)
G1912304 NA non-coding downstream 9595 20656992 ~ 20657286 (-)
G1912303 NA non-coding downstream 10156 20656300 ~ 20656725 (-)
G1912302 NA non-coding downstream 11377 20654963 ~ 20655504 (-)
G1912315 NA non-coding upstream 10681 20687311 ~ 20687575 (-)
G1912319 NA non-coding upstream 13764 20690394 ~ 20690695 (-)
G1912320 LOC107668442 non-coding upstream 14190 20690820 ~ 20691183 (-)
G1912385 NA non-coding upstream 136191 20812821 ~ 20835403 (-)
G1912462 NA non-coding upstream 249540 20926170 ~ 20926409 (-)
G1911862 NA other downstream 205444 20460668 ~ 20461437 (-)
G1910996 NA other downstream 975368 19691066 ~ 19691513 (-)
G1910651 NA other downstream 1175273 19490717 ~ 19491608 (-)
G1910539 NA other downstream 1333656 19332841 ~ 19333225 (-)
G1910398 NA other downstream 1504723 19160449 ~ 19162158 (-)
G1912470 NA other upstream 296049 20972679 ~ 20976236 (-)
G1913665 NA other upstream 1186958 21863588 ~ 21864274 (-)
G1913663 NA other upstream 1194623 21871253 ~ 21872149 (-)
G1915836 NA other upstream 3075213 23751843 ~ 23752463 (-)
LOC110504083 NA other upstream 5486835 26163462 ~ 26165289 (-)

Expression


Co-expression Network