LOC110503989 (LOC106613000)


Basic Information

Item Value
gene id LOC110503989
gene name LOC106613000
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21067646 ~ 21081164 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582705.2
CGCTTCACTTGGTTGGTTGTGTGGTGCGCATGCTCTGTTTAGTAGCCGGTTATGGCGGCGGCGATGTGTGTTTGTCCATGAGGCGGATGAGCGCGAGCTATTCTCACCGACTGAACCTGAACGAAAGCATTGATGGCGGGTGTATTCGACATCGATTTGGATCAGCCGGAGGAAAATGTCTCCGAAGATGAGCTCGAGGAGGCTCAGATCAACGATTTCATGGACCAGTGCAGCGGCTTTGAATTCAATATGGACGACTGTGAGAAGATTGAGATATCTGAGGACAACGTCAACCAAGGAAAAGAGAACATCAGGCCAGAGTGTTTTGAGCTGCTGCGGGTGCTGGGAAAGGGTGGTTATGGAAAGgtttttcAAGTTCGAAAAGTTGCTGGAGCAGCATCGGGGAAGATATttgccatgaaggttttaaagaAGGCTATGATTGTACGCAATGCTAAGGACACGGCCCACACCAAGGCAGAGAGGAACATTCTGGAGGAAGTGAAGCATCCTTTCATCGTGGATCTCATCTACGCCTTCCAGACGGGGGGCAAGCTGTACCTCATCCTGGAGTACCTCAGCGGTGGAGAGCTGTTTATGCAACTGGAAAGAGAGGGGATTTTTATGGAAGACACCGCCTGCTTTTACCTGGCAGAAATTTCCATGGCTCTGGGCCATCTGCACCAGAAAGGCATCATCTATAGAGACCTGAAGCCTGAAAACATCATGCTTAACAACCAAGGCCATGTGAAACTGACTGACTTTGGGCTGTGTAAAGAGTCCATTCACGGTGGCACAGTCACCCATACTTTCTGTGGCACCATAGAGTACATGGCTCCAGAGATCCTGATGAGAAGTGGACACAACAGAGCAGTGGACTGGTGGAGTCTTGGAGCGCTTATGTACGACATGCTGACTGGAGCGCCACCCTTCACTGGTGAAAACAGGAAGAAGACCATTGACAAAATCTTAAAATGCAAGCTGAACCTCCCACCCTACCTCACACAAGAAGCCAGAGATCTCCTGAAAAGGCTTCTGAAGAGAAATGCCTCATCAAGACTTGGAGCAGGGGCTGGAGATGCTACAGAGGTGCAGGCTCATCCCTTCTTCCGACACATTAACTGGGAAGAGCTCCTGGCCAGGAAAGTGGAGGCTCCATTCAAGCCTTTCCTGCAATCTGCTGAAGATGTGAGCCAGTTTGACTCCAAGTTCACCAGCCAAACACCAGTAGACAGCCCAGACGACTCTACGCTTAGTGAAAGCGCCAACCAAGCCTTTCTGGGCTTTACGTATGTTGCTCCATCAGTACTGGAAAATGTAAAGGAAAAGTTCTCATTCGAGCCAAAAATCCGCTCACCCCGACGGTTTTTGGGGAGCCCAAGAACACCAGTCAGCCCTCTCAAGTTCTCTGCCGGTGACGTGTGGCCCCGGGGCCCATTGATGCCCGGCGGATCCTCTCTATGTCTCCAGTCGCCACAGGAGCAGGTCATGTATGTGTCACCCCCAGAACAGATGGATGTGCAGGCCAGCTCTGAGGCCTCAGCCCCCCTACCCATCCGCCAGCCTACTGGGTCCAACCTGTCCCAGTTCAAACAACAGGCCTACCCCGTCATGGCCAAGAGGCCCGAGCATTTACGCATGAACCTATGACCAGCAGCTCATCTTAGAGGATTTTTTTTCTTTGTTGATaattattctttattttttaagaTAAGGACACTAGAGACAATGAAACTCTAAATTTCActtctacacacacaccatcactacCTGAAGTATCCCCAAGGCTGTAACCTCCAGTGTGCTGCAGCTGAGCTCGGCAGACTCGGCCACTCCCTCAGGTCCCCTTGACCTCTGCAGCCTGACCCCTAACAGGACTGGACCAGCGGGACGGGGCATCACTATGGATatttaacttgttttttttttattactccATCCTACCACAAAAAAAAGGAATGAGATAAAACGTATCAAATGTGACCCATCACAATTCACAGTAACGTGCCGTATATAAAACATCATCCAAAGTCCTTCATGTTAGATGATTAACTGCTGATGAGGAATGAATTGCTTCCACTGAACACTTGGGAGATTTGACAGTATTTCTTGAAGGTTGCTTCCTGGCTCAGGATGAAATCATACAAATTATTGTTAATTGAAAACATATATGATTGGGAGGGGTATCAATAAGCTGAGTTTCTGAATATAGCTTTATGTCTTAAGTATTTTACAAAAGGGATGCATCTACTGTGCTATATCAATTCATGAGGGCCtcaataaaaatacatgtttacttTTTACATTTTGAATTACTAACTGAATGTGGACTTTTGGTTATTACATTTGTATTATTTTACTGATAGAATGTTGTTGGGTAAGAACTAAATGAGTACATGCATATCCTCTATAATATTAAACAATATGCACCACA

Function

NR:

description
ribosomal protein S6 kinase beta-1-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04688 RPS6KB; ribosomal protein S6 kinase beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582705.2 True 2434 mRNA 0.47 15 21067646 21081164

Neighbor

gene id symbol gene type direction distance location
LOC110503988 LOC106613001 coding downstream 3269 21029784 ~ 21064377 (-)
LOC110503987 LOC106613003 coding downstream 106005 20950918 ~ 20961641 (-)
LOC110503985 NA coding downstream 126142 20934474 ~ 20941504 (-)
LOC110503976 NA coding downstream 315472 20724908 ~ 20752174 (-)
LOC110503975 LOC106613012 coding downstream 342916 20697761 ~ 20724730 (-)
LOC110503992 LOC106612997 coding upstream 7571 21088735 ~ 21111304 (-)
LOC110503990 LOC106612996 coding upstream 30907 21112071 ~ 21117277 (-)
LOC118944112 LOC106612996 coding upstream 35945 21117109 ~ 21126584 (-)
LOC110503993 LOC106612995 coding upstream 58352 21139516 ~ 21151675 (-)
LOC110503995 LOC106612993 coding upstream 119969 21201133 ~ 21212559 (-)
G1912496 NA non-coding downstream 1305 21066030 ~ 21066341 (-)
G1912483 NA non-coding downstream 60005 21007167 ~ 21007641 (-)
G1912469 NA non-coding downstream 97088 20968447 ~ 20970558 (-)
G1912454 NA non-coding downstream 117429 20948535 ~ 20950217 (-)
G1912439 NA non-coding downstream 120479 20945023 ~ 20947167 (-)
G1913254 NA non-coding upstream 4661 21085825 ~ 21086059 (-)
G1913296 NA non-coding upstream 90479 21171643 ~ 21175302 (-)
G1913393 NA non-coding upstream 264136 21345300 ~ 21345641 (-)
G1913410 NA non-coding upstream 308039 21389203 ~ 21389481 (-)
G1913412 NA non-coding upstream 311196 21392360 ~ 21393268 (-)
G1912470 NA other downstream 91410 20972679 ~ 20976236 (-)
G1911862 NA other downstream 606209 20460668 ~ 20461437 (-)
G1910996 NA other downstream 1376133 19691066 ~ 19691513 (-)
G1910651 NA other downstream 1576038 19490717 ~ 19491608 (-)
G1910539 NA other downstream 1734421 19332841 ~ 19333225 (-)
G1913665 NA other upstream 782424 21863588 ~ 21864274 (-)
G1913663 NA other upstream 790089 21871253 ~ 21872149 (-)
G1915836 NA other upstream 2670679 23751843 ~ 23752463 (-)
LOC110504083 NA other upstream 5082301 26163462 ~ 26165289 (-)
LOC110503381 LOC106613064 other upstream 5129252 26208892 ~ 26241410 (-)

Expression


Co-expression Network