LOC110503990 (LOC106612996)


Basic Information

Item Value
gene id LOC110503990
gene name LOC106612996
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21112071 ~ 21117277 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962161.1
GAGCCAGCTGGTCACCTGAGGAGGTCCATGCGTTGTTAAGACTCTGGGCAGATGGGAGTGTTCAGGAGCAGCTTCTCTCATCAGTGAGAAACAAGAGTCTTCACCAAACTTAGTTCCGAGCTCGCTGCCCTCGGATCTACGAAGACATCTAAACAGtgcagagagaaaataaaaaagcTGAAACAGGAATACAAAAAAATCAAGAATGACACTAGCAAAAATAGTTCCAATATTCGTGGAACAAGATGGTTTGCCATCATGGATGCTGTTCTCAGTCAGCGAACAAGAACTTCAATGCTTTTGGAGTCGACTCCGCTTAAGTCCTTGCCCGAGGCAGAACACTCTGGTTCCCGTTTAACTCTCTCCTCCCTACGTCTCCTTGCTCCACCATTACGCCTGATGTCAGCATTCCTGTGGCAAGTGGCTCAGCAGCATACTGTAAAGCATTTTGGGAAACTGGAAGAGTTTGTGACTTTGGTGACAGAGGTGGTTCCAGAGCTGCTGAGTTCCAGGCAGAGGACCCAACTCCTCCTGGGTCTGAGAGCAACGCTGGTTCTAGAGTTATGTCGTAATGAATGCACAGCTGACCTCGTGACCATCCAGCCTCACCTGGATAAAATCCATTCTTTGACAGAATTCTCTGTACACAAAGAGAGTAATGATGATGAGTTGAAGGCTACATTGTCTAATTTTGTGGAATTGGTCCAAACCCTGCTGGAAGACCCTTCTGAGAGGGAGCACTTCTTTCAGGTGGTGTTCCCAATACACTACGGCCCTCGGTATGACACAGCACTGCGGGTACTGGTGTGGGAGTTCCTCTCCAGACTGGAGGAGCTGCTACCTGTACCAGACTTCACACAGACGGCAGCATGGCTTGGTGCAGGCCCCTCTGTCTTGGAGGAATGTGGACATGCCATATTTGACACTGAAGAGCTGAAGACACTTCTGCAGCACCATCAGCATCATGGAAACCTGAAAAAGAGTTATTTATCTTATTACACTGCAGATACCATCCTATCcacactgtccctccctccaacAATAAGAGTTGTCATTGGCTCTGAGCAGCCCAGCTCTGACAAaacgagagatggagaagagCGAGAAGGACAACCTaatggggacagagaggaggaggaaatggaagagagacagaatgaaGAGAACTGGGAAGATGAAGATTGCAATGAAATAAGTTATATAAGGCAGGATTTGGAGCAACAGGAGCAGATGGGCATTTCAACGGCAGAGACGTCTGCTCTGTGTATCCCAATGCCCAATAACGGATTTAATGATGAAATGTCATCCCGCATCCTTGCCTGCTCCCTATGCCCATTCAATCACATTGAAATTGCAAAACTCCACCAGCACATCAGGATTAGGCATCGAGGAGAGGACCGGAAGCTTTTATGTTCTAAGGAATCTGGGACTGATCACCCCTTTCCCTCAAGCAGCACTAAAATAATCCCCTATGCACCAATAATCAAGACTCACAAATGCACTCATTGTGGTAAAGTTTTCAAATGCTCCAAAACCCTGAAAGTACATATAGGAATTCACACATTGCCATTCCATTGTAACCAGTGCGAGAAAAGATTTTCTTCCAGGTGTGGTCTGAAAAAACATCAGCGAGTTCACACAGGGGAAAGACCATTCAAATGCTCTCACTGTGACCGAAAATTCATGTGTGCAGGTTCACTCAAATggcatgtgcgcacacacactggGGAGCGTCCCTACTGTTGCACTATTTGTGGGAAAACATCTGTCCAACATCTAGCAAGACACATGCGGATGCATGCAGGGGAGAAAAACTATTTATGTAGCATCTGTGGTAAGGCATTCCTTAGCTCAGGAGAACTGAGGTTGCATACACGATCACACACAGGAGAATGTCCCTACACCTGTAAACATTGTGGAAAGGGCTTCAAAGCATCATGCCATCTAACACTTCATATGCGATCTCACACAGGAGAGCGTCCATACCCCTGCACCCTGTGCACAAAACGTTTTACTACGGCAAGAGGCCTTAAAAGACACACGCTTACTCACACTGGCGAAAAACCTCACCAGTGCTACAagtgtgggaagagattttcTGTAAGGGGAAATCTGAATACACATCTTAAAAGTCATAGATTTTAGGATGGGATTCTGCAGGAGCAGTCTCATAGAATTGACTTTAATTAAAATATAAACAATTTCATTAAATACTGAACAAGTTTT

Function

NR:

description
uncharacterized protein LOC110503990

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962161.1 True 2226 mRNA 0.46 8 21112071 21117277

Neighbor

gene id symbol gene type direction distance location
LOC110503992 LOC106612997 coding downstream 767 21088735 ~ 21111304 (-)
LOC110503989 LOC106613000 coding downstream 30907 21067646 ~ 21081164 (-)
LOC110503988 LOC106613001 coding downstream 47694 21029784 ~ 21064377 (-)
LOC110503987 LOC106613003 coding downstream 150430 20950918 ~ 20961641 (-)
LOC110503985 NA coding downstream 170567 20934474 ~ 20941504 (-)
LOC110503993 LOC106612995 coding upstream 22239 21139516 ~ 21151675 (-)
LOC110503995 LOC106612993 coding upstream 83856 21201133 ~ 21212559 (-)
LOC118944001 NA coding upstream 370535 21487812 ~ 21499941 (-)
LOC110504001 LOC106581123 coding upstream 387456 21504733 ~ 21520596 (-)
LOC110504006 LOC106612989 coding upstream 408951 21526228 ~ 21535878 (-)
G1913254 NA non-coding downstream 26012 21085825 ~ 21086059 (-)
G1912496 NA non-coding downstream 45730 21066030 ~ 21066341 (-)
G1912483 NA non-coding downstream 104430 21007167 ~ 21007641 (-)
G1912469 NA non-coding downstream 141513 20968447 ~ 20970558 (-)
G1912454 NA non-coding downstream 161854 20948535 ~ 20950217 (-)
G1913296 NA non-coding upstream 54366 21171643 ~ 21175302 (-)
G1913393 NA non-coding upstream 228023 21345300 ~ 21345641 (-)
G1913410 NA non-coding upstream 271926 21389203 ~ 21389481 (-)
G1913412 NA non-coding upstream 275083 21392360 ~ 21393268 (-)
G1913413 NA non-coding upstream 277972 21395249 ~ 21443283 (-)
G1912470 NA other downstream 135835 20972679 ~ 20976236 (-)
G1911862 NA other downstream 650634 20460668 ~ 20461437 (-)
G1910996 NA other downstream 1420558 19691066 ~ 19691513 (-)
G1910651 NA other downstream 1620463 19490717 ~ 19491608 (-)
G1910539 NA other downstream 1778846 19332841 ~ 19333225 (-)
G1913665 NA other upstream 746311 21863588 ~ 21864274 (-)
G1913663 NA other upstream 753976 21871253 ~ 21872149 (-)
G1915836 NA other upstream 2634566 23751843 ~ 23752463 (-)
LOC110504083 NA other upstream 5046188 26163462 ~ 26165289 (-)
LOC110503381 LOC106613064 other upstream 5093139 26208892 ~ 26241410 (-)

Expression


Co-expression Network