LOC118944112 (LOC106612996)


Basic Information

Item Value
gene id LOC118944112
gene name LOC106612996
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21117109 ~ 21126584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036962164.1
tattgctcatttgttcccatttgaaacgacaggctgtggtctatcttggtttagttatacaCATCTTTGCAATATCCGAACCGTGCTAGGCAGACTATTGTGAAAAGGGTATTCTATAAACTTCTACAAATAGCAAATACATAACCATGGAAAACAAAAAAATCCCTGTCCTGTGCATGTCAATGGGCACCTGAGGAGGTAGTGGCATTGTTAACACGCTGGGCAAACGGGAGTGTTCAAGAGCAGCTTCTCTCCGCAGTGAGAAACGAGAGAGTCTTTATCAAACTTAGTTCAGAGCTTGATGCCATAAGCTTCATCAAAACATAGACACAGTGTAGGTGGAAAATAAAGATGCTGAAACAGGAATATAAAAAAATCAAGGACGACGAAAACAAGAATGCCTCCACCGGTCTTAGAAGAAGATGGTTTGCCATCATGGATAGTGTCCTCGGTCACCAACCAAGTGGTACCTTATTGGAGTCTGGCTTGGTAATGAATTCTCAAAATATTTTGGAGTCCACGCCTGATGCCCCACCAGAGGAGGAAGATCCCGACAAGTCACCATCCAGTTGGATGCCTGATGAGGTCCACAGTCTCTTTAGTCACCGTTCAGGGACTTCAGGGTCTGGCAGGATAAATTCAGCTTCTAGGCTGTTGGAGTCTGCTGATTCCCCACAAAAAGCGGAAGATTATGATGAATCTCCATTCCGCTGGACGCCTGAGGAGGTCCATGCATTGTTAAGACTCTGGGCAGACAGGAGTGTTCAGGAGCAGCTTCTCTCATCAGTGAGAAACGAGAGCGTCTTTACCAAACTTAGTTCAGAGCTCGCTGCCCTGGGATTTAACAGGTCGTCAAAGAGGtgcagagagaaaataaaaaagcTGAAACAAGAGTATCATAAAATCaaggacaacaataagaagagGAGCTACAACCGCCGTAGAGAAAGATGGTTTGCCATCATGGATAGTGTCCTCCGTCACCAACCAAGTACTTTGGTAATAGATTCAGATGGAAATATATTGGAGTCAACTCAACCTAATTCCCCACAAGAAGTGAAAGATTCTGATGAATCTCGAGCCAGCTGGTCACCTGAGGAGGTCCATGCGTTGTTAAGACTCTGGGCAGATGGGAGTGTTCAGGAGCAGCTTCTCTCATCAGTGAGAAACAAGAGTCTTCACCAAACTTAGTTCCGAGCTCGCTGCCCTCGGATCTACGAAGACATCTAAACAGtgcagagagaaaa
>XM_036962163.1
ctattgctcatttgttcccatttgaaacgacaggctgtggtctatcttggtttagttatacaCATCTTTGCAATATCCGAACCGTGCTAGGCAGACTATTGTGAAAAGGGTATTCTATAAACTTCTACAAATAGCAAATACATAACCATGGAAAACAAAAAAATCCCTGTCCTGTGCATGTCAATGGGCACCTGAGGAGGTAGTGGCATTGTTAACACGCTGGGCAAACGGGAGTGTTCAAGAGCAGCTTCTCTCCGCAGTGAGAAACGAGAGAGTCTTTATCAAACTTAGTTCAGAGCTTGATGCCATAAGCTTCATCAAAACATAGACACAGTGTAGGTGGAAAATAAAGATGCTGAAACAGGAATATAAAAAAATCAAGGACGACGAAAACAAGAATGCCTCCACCGGTCTTAGAAGAAGATGGTTTGCCATCATGGATAGTGTCCTCGGTCACCAACCAAGTGGTACCTTATTGGAGTCTGGCTTGGTAATGAATTCTCAAAATATTTTGGAGTCCACGCCTGATGCCCCACCAGAGGAGGAAGATCCCGACAAGTCACCATCCAGTTGGATGCCTGATGAGGTCCACAGTCTCTTTAGTCACCGTTCAGGGACTTCAGGGTCTGGCAGGATAAATTCAGCTTCTAGGCTGTTGGAGTCTGCTGATTCCCCACAAAAAGCGGAAGATTATGATGAATCTCCATTCCGCTGGACGCCTGAGGAGGTCCATGCATTGTTAAGACTCTGGGCAGACAGGAGTGTTCAGGAGCAGCTTCTCTCATCAGTGAGAAACGAGAGCGTCTTTACCAAACTTAGTTCAGAGCTCGCTGCCCTGGGATTTAACAGGTCGTCAAAGAGGtgcagagagaaaataaaaaagcTGAAACAAGAGTATCATAAAATCaaggacaacaataagaagagGAGCTACAACCGCCGTAGAGAAAGATGGTTTGCCATCATGGATAGTGTCCTCCGTCACCAACCAAGTACTTTGGTAATAGATTCAGATGGAAATATATTGGAGTCAACTCAACCTAATTCCCCACAAGAAGTGAAAGATTCTGACAAATCTCCATCCAGTTGGACACCTGACAAGGTCCATGGTTTCCTTGGTCACCGACTTGGAACCTCAGCTACTAAGATAGATTCACCTACTATGCTGTTGGAGTCGAATGATTCCCCTCTAGAAACAGAATATTATGGTCATCTAGTCATGTCTTTCTGAACCTTTTTTACAGACTCAATGTCTGCTAACGATCTGAGGGACCAGACAGTAAAATAGTCAAtgagaaacaaacaacaaaaacataaacgaaACAtacaagtgttggtcccatgtttcatgagctgaaataatagaTCCTAGTAATTTtttccaaatgcacaaaaagcttatttcgctcaaATTTGATCAACAAACTTGTTTGCCAAGATTTTCcacacacctgacaggtgtggcatacagtgccttgcgaaagtattcggctcccttgaactttgcgagcttttgccacatttcagg

Function

NR:

description
PREDICTED: uncharacterized protein LOC106612996 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036962164.1 False 1247 mRNA 0.45 4 21117109 21126583
XM_036962163.1 True 1528 mRNA 0.43 4 21123378 21126584

Neighbor

gene id symbol gene type direction distance location
LOC110503992 LOC106612997 coding downstream 5805 21088735 ~ 21111304 (-)
LOC110503989 LOC106613000 coding downstream 35945 21067646 ~ 21081164 (-)
LOC110503988 LOC106613001 coding downstream 52732 21029784 ~ 21064377 (-)
LOC110503987 LOC106613003 coding downstream 155468 20950918 ~ 20961641 (-)
LOC110503985 NA coding downstream 175605 20934474 ~ 20941504 (-)
LOC110503993 LOC106612995 coding upstream 12932 21139516 ~ 21151675 (-)
LOC110503995 LOC106612993 coding upstream 74549 21201133 ~ 21212559 (-)
LOC118944001 NA coding upstream 361228 21487812 ~ 21499941 (-)
LOC110504001 LOC106581123 coding upstream 378149 21504733 ~ 21520596 (-)
LOC110504006 LOC106612989 coding upstream 399644 21526228 ~ 21535878 (-)
G1913254 NA non-coding downstream 31050 21085825 ~ 21086059 (-)
G1912496 NA non-coding downstream 50768 21066030 ~ 21066341 (-)
G1912483 NA non-coding downstream 109468 21007167 ~ 21007641 (-)
G1912469 NA non-coding downstream 146551 20968447 ~ 20970558 (-)
G1912454 NA non-coding downstream 166892 20948535 ~ 20950217 (-)
G1913296 NA non-coding upstream 45059 21171643 ~ 21175302 (-)
G1913393 NA non-coding upstream 218716 21345300 ~ 21345641 (-)
G1913410 NA non-coding upstream 262619 21389203 ~ 21389481 (-)
G1913412 NA non-coding upstream 265776 21392360 ~ 21393268 (-)
G1913413 NA non-coding upstream 268665 21395249 ~ 21443283 (-)
G1912470 NA other downstream 140873 20972679 ~ 20976236 (-)
G1911862 NA other downstream 655672 20460668 ~ 20461437 (-)
G1910996 NA other downstream 1425596 19691066 ~ 19691513 (-)
G1910651 NA other downstream 1625501 19490717 ~ 19491608 (-)
G1910539 NA other downstream 1783884 19332841 ~ 19333225 (-)
G1913665 NA other upstream 737004 21863588 ~ 21864274 (-)
G1913663 NA other upstream 744669 21871253 ~ 21872149 (-)
G1915836 NA other upstream 2625259 23751843 ~ 23752463 (-)
LOC110504083 NA other upstream 5036881 26163462 ~ 26165289 (-)
LOC110503381 LOC106613064 other upstream 5083832 26208892 ~ 26241410 (-)

Expression


Co-expression Network