LOC110503996


Basic Information

Item Value
gene id LOC110503996
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21198192 ~ 21200877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470546.2
ccatagacatacatactgtacagaaTGTGCACTATATTATtgaaatatacactaccggtcaaaagttttagaacaccccCATTTTTCCAGTTTTTATTGAAACATAAGCAGTTCAAGTCCAGTGAATAACCTGAAATGGTAAGAAGTACACTTCCAGAGGTAATTTTTTAAAGAGTTTAGGTTaccaaaaacagaaaaataatgtacattttaGAGTTATAAGAAAGGGCCTTTTTCAGGGAAAAGGTCATGGGTTAACAACATACAGCTGTTCTGGAGCAATGGAAGTAAATTAAGCCTTGAAAGTTGATGCTCACGTTTCCTACAGGTGTCCCAACTTTTGTTGATTACTTACCAACCCTCTGTCTGGATAACAGCAGTGTTGGAACATACTGTGTTACTACACACTCTTCAGCATTATTTGGACAGTATTGTACTGCAGGAAGTAGTATATTGCTATCATAATGTTGAGGGAAAATGCAATTAACAAAATACAGACCATTATAACCCTTAAAAGTGTAGGTCTTTCCTTTAGAGAAATTGCAAAGAAAGCCAAGGTGTCAGTGAGTACAGTTTCCTACACCATCAAAAGGCAATTGGAAACTGGAGGAAATTCTGACAGGAAGAGGACTGGCAGACCCAAAACCACAACAGAATCAGAACACAAGTTTCTGAGAGTCAACAGCTTGCGTGACAGGCGGCTCACAGGACAACAGCTTCAAGCACCTCTTAACACTGGTCGATGTAAGCAAGTCTCAGTTTCAACTGTGAAGAGAAGACTTCGAGCTGCAGGTTTGACCGGTGGAGAGGCAGTAAGAAAGCCACTGCTAAGATGGCAAAATGAGAAGAGGCTTAAATTGACTGGTTCAGTTGTCTTTCATTTCAGTCACTCTTATCCTGAAGACAGTACATGCAGGATTTGGGAATCAAATATCTACACACTTCAGCCGTGGCCGTTCTTCAGTGAGCCACATTGTCACCCATGATTACAACACAGAGACTGGGAATAACAACATCGCCCTCATTAGACTCATTAAACCATTGCAGATTAATGATCAAATAAGGCCTGTGTGTTTGCCCAATGTCGGGCTGGACTTCACTGCTCCCCAGACATTCTGGATTTCGGGGTTTTGCAGCACAGTTTCTAGTGGACTCAGTATGGTGGCTGGTAGGGGACACAAGCTGGGGAGATGTCTGTGCCGAGGAACAAACCAGGCATCTATGGAAACGTTGCCTTCTTCCTAGGCTGGATCTATGAACAAATGCAGAAATAAAGAAACTGAGAAATCACTGGTGGACAATCAGAATGAAATGGTGGAAACATTGTATTTTTTTCTGAATAGAAAAGCCAGAAAGAGATGTTTGTACGTACAGTGTGTCATCAGAAATTCTGATGTTATGTGCTACATATTGAATTTGTCCTCATTTGTATGTATGTGTTCATTAAATGACTACTTCTACA

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470546.2 True 1462 mRNA 0.41 4 21198192 21200877

Neighbor

gene id symbol gene type direction distance location
atm atm coding upstream 3590 21151903 ~ 21194602 (+)
LOC118944065 NA coding upstream 64616 21130444 ~ 21133576 (+)
LOC110503464 NA coding upstream 67827 21128900 ~ 21130365 (+)
LOC118944113 NA coding upstream 80934 21111436 ~ 21117258 (+)
LOC110503368 NA coding upstream 110500 21081201 ~ 21087692 (+)
dscamb LOC106612992 coding downstream 28592 21229469 ~ 21356455 (+)
LOC110504000 LOC106612988 coding downstream 320727 21521604 ~ 21525948 (+)
LOC110504007 NA coding downstream 331819 21532696 ~ 21537673 (+)
LOC110504008 LOC106612987 coding downstream 342432 21543309 ~ 21557646 (+)
sacs LOC106612984 coding downstream 447494 21648371 ~ 21683308 (+)
G1912558 NA non-coding upstream 22888 21173632 ~ 21175304 (+)
G1912554 NA non-coding upstream 46518 21151131 ~ 21151674 (+)
G1912267 LOC106613001 non-coding upstream 154622 21043207 ~ 21043570 (+)
G1912266 NA non-coding upstream 156059 21041791 ~ 21042133 (+)
G1912568 LOC106612993 non-coding downstream 2053 21202930 ~ 21205447 (+)
G1912630 NA non-coding downstream 100158 21301035 ~ 21301432 (+)
G1912631 NA non-coding downstream 100591 21301468 ~ 21301851 (+)
G1912651 NA non-coding downstream 134866 21335743 ~ 21336072 (+)
G1912674 NA non-coding downstream 190994 21391871 ~ 21392171 (+)
G1911474 NA other upstream 890800 20304763 ~ 20307392 (+)
G1911460 LOC105030512 other upstream 912126 20284320 ~ 20286066 (+)
G1910697 NA other upstream 1578462 19619418 ~ 19619730 (+)
G1909739 wdr81 other upstream 2400914 18789221 ~ 18797278 (+)
G1909273 kiaa0100 other upstream 2724365 18473203 ~ 18473827 (+)
G1912565 LOC106612993 other downstream 259 21201136 ~ 21202449 (+)
G1913153 NA other downstream 992913 22193790 ~ 22194607 (+)
G1915361 LOC106611080 other downstream 2224312 23425189 ~ 23426072 (+)
G1916129 NA other downstream 2811388 24012265 ~ 24012808 (+)

Expression


Co-expression Network