LOC110503995 (LOC106612993)


Basic Information

Item Value
gene id LOC110503995
gene name LOC106612993
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21201133 ~ 21212559 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582715.2
ATCGTCGTTGACCAACAAAAAAACTCGTCACATCCGCGATATGGATTTCAGGAAGTAATCTAAAATAATAAAGTGGTGAACAACTTTCAGAGAGAGGAGTAAACTTCTAAATGACAAGTGTCTAAATGTAAAGCCGGAGTTGTTTCTTATGTGTTTCTTTATCGTCGTTGTCGGAACAACACGTTCACCATGATTACCGCACTGGAGGTTTCATGTTGGCCAAGCTGAAAACTAAGGAGCGAACTTTGAACAAGGAGCTGAACTTTTTCTGAGGTTTGACTTGCCCTAAATATTATTTGCCATGGCTTACCATAAAGGTTCTATTCCTTTCAGGGCATTATTTATCATGCTCTGTTTTGGAATGGCAAAATCTCTCTATACCATTCCACTTAAAATATTTATAGGGACGTTTAACTCTTCTTTGGATTTGGATTTAACTCCTCTGAAACTAATACAAGCCTCGGGAAATGGACTGTCCCTGGCATCTGATCCAACTGGAATAGTGAACTTTCTGGACATGGTCACTAACTTACAAGGCGACTCTGGCAGAGGTTACTACATGGAGATGACACTGGGTACCCCTGGTCAAAAGCTGAATATCCTGGTTGATACAGGAAGCAGTAACTTTGCAGTGGCTGCAGCAGCACATCCCTTCATCACACACTTCTTCAACACAGCACTTTCCAGTACGTACCAGTCCACTGGCAGGGGCGTGGCCGTCAAGTACACCCAGGGCAACTGGGAGGGCGAGCTGGGCACCGACCACGTCCGCATCCCCAGCATCCCCGGCACCCCCACCATCAACATCGCCACCATTCTCTCCTCCAACGGATTCTTCCTCCCGGGGGTCAACTGGCAGGGCATCCTGGGCCTGGCCTACCCCCTGCTGGCTCAGCCTGACTCCTCGGTGGAGCCCTTCTTTAACTCTGTGGTACGACAGACAGGCATCCCAGATGTGTTCTCCCTCCAGATGTGCGGAGCTGGGTTGTCAGACAGCACCACTGCCGACCCCGCGGGGGGAAGTCTTGTCATGGGAGGGGTTGAACCAACATTGTATTCGGGGTCCATGTGGTACACCCCTATAAAGGAAGAGTGGTACTATCAGGTGGAAGTATTAAAGCTGGAGGTTGGGGACCAGAATCTAAACCTGGACTGCAAAGAGtACAACCAGGATAAAGCCATAGTGGACAGTGGAACCACTCTTCTGCGGCTGCCTGTGAATGTGTTCAATGCTGTGGTGGAGGCCATCTCAAGAACATCTCTGATCCAGGACTTCACCTCAGGGTTCTGGGGTGGCACTAAACTGGCCTGCTGGTTGAAGGGAGAGACACCGTGGAGGTTCTTCCCCAAACTGTCCATCTACCTGAGAGCCACCAACAACAGCCAGTCCTTCAAAATCTCCATCCTCCCTCAGCTGTATATCCAGCCAATCACAGACGTGGACGGTAGGCTGGACTGCTTCCGCTTCGGCATCTCGTCGTCAGCCAACGGCCTGGTGATAGGAGCAACCGTCATGGAGGGCTTCTACGTCGTCTTCGACCGGGCTGAGAAGAGGGTGGGCTTCGCTGTCAGCAGATGTGCAGTGAACGGTGGGCTAGCCGTGTCAGAGATCTTGGGGCCCTTCTCATCTGCAGACGTGGCATCTGACTGTGCTGCTGGAGGGCTGCTGAAGGAGCCCCTTCTCTGGGTCATCTCCTATGCCCTGATGGCTGTCTGTGCTGTGGTACTCCtcatcctgctcctcctcctgtcctgtcgTCACCGAGACCGGTCCGGCGAGATCACTGATGAGTCCTCGCTGGTCCGCCACCGCATCAAGTGACTGAGGCGGGCCTCGGGTGACACGACAGCGGCCACCGGCAGTCCCAGTTCTACGGAGGCTGGGAAAGGGGAGGGGTTGGGGCTTCACTGACCAATAGGACTGTTCTCTGGACATCATGGGGGGAAAAAACTAACCCATTTGACCAGTGAACACTTGTCTTAGCTTAGATGTTACCAGTTCTTTGCACTCCAGTTGTACATCAACCTCTGATTAATTTAGACATGTTATAAGACTGAAGGTTGGGTAGCAGAAATGAATCATGCTATCCTTATGCCAGCCCAGTTCCTCATTGCACATATTACCTGATTCTCCACTGCCTACAACATGGTAGTGAAGCACACTGCTCTCAGCTGAGAGACAAGGTCCTAGAGAACTCTTAAACAGTCAGGTTTCTTTTTACTTCTTAGAAGCCTCAACTCAAAATAGGATATTGTAAATGATGCTTTGAAGTTTGAATGTTCCCCACAGGTATCAATACCATTATTTCATGGCAACTTCTGTGATAAAAGGAGGAATGTTTCGTAGCAGTTTCTTATTTTCATTCCCAAAGCACAACCAGGAGTTCAGACAATTGAAGATGCACACATTATGTTGATATCATACTTCCCTTCTGGTTTACAATGTCCTCATATGGGAACTAGCATGGTTTGTAACCTTTTTAATTGCACTGATCAAAAGTGTCAAAAAATATGAAGATCAATATCACTGCATCTGTATGAGTGAGAATGAAGCAATCGATAGGATTCTGTAACCGACATTGATAATGTACTTTTACTGCTATACATATTTGAAATGTCAATGTGATTGTATATTATTTTAAAAACTTGCCATTGGTAGACACATACAGAAAACTGATTTGTAAGGGCACATATGTTTCTATGCTAATTCATGTTCTAAATTGTACAACACCCAAAGTTACCCATGATTTCAAAAGTGGAGATAAATTGTCTTAGGAAAATATTTTGCAAAGGTGTTGATATGAAACCGTTGTGCATGATCATGTTTGTTTAAAATGTGTTAACTGTATATCAGTGCCAAAGTTGTGATTGTATGTAATTACATTGACCAGATTAAAGTAAAGGCTCTCTCA

Function

NR:

description
beta-secretase 2-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG:

id description
K07747 BACE2; beta-site APP-cleaving enzyme 2 (memapsin 1)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582715.2 True 2912 mRNA 0.47 9 21201133 21212559

Neighbor

gene id symbol gene type direction distance location
LOC110503993 LOC106612995 coding downstream 49458 21139516 ~ 21151675 (-)
LOC118944112 LOC106612996 coding downstream 74549 21117109 ~ 21126584 (-)
LOC110503990 LOC106612996 coding downstream 83856 21112071 ~ 21117277 (-)
LOC110503992 LOC106612997 coding downstream 89829 21088735 ~ 21111304 (-)
LOC110503989 LOC106613000 coding downstream 119969 21067646 ~ 21081164 (-)
LOC118944001 NA coding upstream 275253 21487812 ~ 21499941 (-)
LOC110504001 LOC106581123 coding upstream 292174 21504733 ~ 21520596 (-)
LOC110504006 LOC106612989 coding upstream 313669 21526228 ~ 21535878 (-)
LOC110504009 LOC106612986 coding upstream 414122 21626681 ~ 21642328 (-)
LOC110504013 LOC106612981 coding upstream 472078 21684637 ~ 21703459 (-)
G1913296 NA non-coding downstream 25831 21171643 ~ 21175302 (-)
G1913254 NA non-coding downstream 115074 21085825 ~ 21086059 (-)
G1912496 NA non-coding downstream 134792 21066030 ~ 21066341 (-)
G1912483 NA non-coding downstream 193492 21007167 ~ 21007641 (-)
G1912469 NA non-coding downstream 230575 20968447 ~ 20970558 (-)
G1913393 NA non-coding upstream 132741 21345300 ~ 21345641 (-)
G1913410 NA non-coding upstream 176644 21389203 ~ 21389481 (-)
G1913412 NA non-coding upstream 179801 21392360 ~ 21393268 (-)
G1913413 NA non-coding upstream 182690 21395249 ~ 21443283 (-)
G1913462 NA non-coding upstream 241170 21453729 ~ 21459081 (-)
G1912470 NA other downstream 224897 20972679 ~ 20976236 (-)
G1911862 NA other downstream 739696 20460668 ~ 20461437 (-)
G1910996 NA other downstream 1509620 19691066 ~ 19691513 (-)
G1910651 NA other downstream 1709525 19490717 ~ 19491608 (-)
G1910539 NA other downstream 1867908 19332841 ~ 19333225 (-)
G1913665 NA other upstream 651029 21863588 ~ 21864274 (-)
G1913663 NA other upstream 658694 21871253 ~ 21872149 (-)
G1915836 NA other upstream 2539284 23751843 ~ 23752463 (-)
LOC110504083 NA other upstream 4950906 26163462 ~ 26165289 (-)
LOC110503381 LOC106613064 other upstream 4997857 26208892 ~ 26241410 (-)

Expression


Co-expression Network