LOC110504000 (LOC106612988)


Basic Information

Item Value
gene id LOC110504000
gene name LOC106612988
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21521604 ~ 21525948 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961192.1
GGTGCAGGCTCATCTTTTGCATGGGAGACATGTCTCTGAGTCTGAGACACCACACCAGAGGCATAGTGCAGCAGGACGATGCTAACTATGAAGTTGGAGCAGGGGATGTAGACTCAAGCTGCTCCTCAGGCcagtccaccccctccaggtcAAGCAGGGGATACAGCAGTACGACAGGCAGCAGAGTAGACTCTCAGGGGTCATGCACCCAGTCAGACTACGAGGAGGAGGCTGACACTACTGCAAATAGGACCTTTGCCCTCTCGCCAAACAAGAAGCCAGGTCTAGGCACGAAGACAGCTAAAACACGAATGCAAAACAAGGGAGGTTCGTGGTGCAAAAAGAAGAAAAACACTAATTTAAGGAACCGCAAGGCCTCTCTCGTCCCTCCAATCAAGCCCCTGGAGGGCCCAAACCAGCGCATTAGGTCTGCCCACAGGCACCGCATCAAGGAGCTCAACAGCCAAGTCTGGGAGCTACAGCAGCAGCTGAGTGGTGTCGCCACAGAGAACAAACTGCTAAAGCAGCTCCAGGTCCGCCACACAGTGGCGCTACAGCGCTTCCAAGACTCACAGAGTGGCCTTCCCCAGGTCCTGGCCAAGCACGGCAATGAGGTGCGTGGTCTGCAGGAGCACCTGCGCAAAGCCCGCATCCGCCGCAACAGTCTGTCAAGGCGTCTACGTGGAACGGAGGAGGAGCTGCTGCGTACCAAGGACGTTCTGCACAGGCTGCAGCTGCTCAGCGAGGACCGCAGcctgaaagagagggaagagcttAGCCACAGGCTGGCCCTGATCAGTGTGGACCTGAACAGGAAGAACAAGAGGATACAGGACTTGGAAAGAAATTTTGAGCTGAGCCAGATATCCTTCAATCGCCATCTTGCCACAGAAACAAGGAAGACCAATGAGGCCAGAGAGATGTCTGATTACCTCCAGGCACAGATCAGTCTGTTGACCCAAAAAATCAAAgaaaaagagagagaattggaGATCCACAATATCTACTCACATAGATTTCCAAATGGCTGGAACGGAAAAGGGGCAAGAGAAACTAAATCTGTTCAAACAGATGACTTGTCCTCTCTCCCCATTGAGGCTCCGTGCCAACTTGAACTAGAATATGCCTGTTCACTCCAGCATCTGGAGTTGGAGAAGCAGAAGAGCTTGAGCTGGGAGTCCTTTGCCATCGACTTCACAGACAGAAGTGACGCAGCAGACACGTTAGAGGATGACAGAGGATCAAACAATAATGAAGACTTTGCGGaggatggagagttggatGGTGATTCTGACAAGGAGAATCCTCAGCTTCAGGGTGAGGAGGATTGCCTTGCAGAGAAGGCAGCGAGTTCCCCGAAGGCTTCAGGAGAGCAAACAGAACCGTTTGAAAGCCAGGTCCGGTACACTCTGGAGGATTTTCTGATTACAGAACGTGCCAACAAGGCCCTTGAATCCTCTCCCAGGACCAAACGCCTCTACAAATTCAAAGAAACCATCCAGAACCTACACAGTGGAAAGCCTGCCTATACCAGCCATACCCACAGCCTGAGAAAGAGCCCTCCTAGATACATCAAGAGCCAGGCCAGGGTGGAGAACCTTGGGTCTGGGGCATATGAGCCCTCCTTTGTCACTCTACCAGCAGAGAAGTGGCAAAGGCGTGACACCAGGGGCCCTCAACCGGAGGATGGTGTAGTCCGCAGCAAGAAGAGCAGCTTGATGAAAGAGCTTTTCGGCCAGGCCCCAATCACTGATCCAATTGCCATGCAGACAGGCATATCCAGAGTTCAAAGTACAGACCTGGACAGAATGTCATCTCACCATACAGGAGATGCTAGCCCAGTCTCACCTGGGAGAGAGACCAAGATCATTTTTGATTGACCTAAGAACAATACAAAATGATAATCTATTTTCACAAGTTGATTATTTTAATAAATATTTCATCTGCCATGGCAA
>TU2187506
CAGCTAAAACACGAAGTATGTGATATCTGATATTTCATATCTTCTCATTACTACAGGACAGCCTAGCTTTAATGACACaccgtgcattcggaaagtattcagatcccttgaccttttccacattttgttacgttacagccttattctaaaatggattaaatgcgttttattcctcatcaatctacacacaataccccataatgacaaagcgaaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961192.1 False 1955 mRNA 0.51 8 21521604 21525948
TU2187506 True 215 lncRNA 0.36 1 21521901 21522115

Neighbor

gene id symbol gene type direction distance location
dscamb LOC106612992 coding upstream 165149 21229469 ~ 21356455 (+)
LOC110503996 NA coding upstream 320727 21198192 ~ 21200877 (+)
atm atm coding upstream 327002 21151903 ~ 21194602 (+)
LOC118944065 NA coding upstream 388028 21130444 ~ 21133576 (+)
LOC110503464 NA coding upstream 391239 21128900 ~ 21130365 (+)
LOC110504007 NA coding downstream 6748 21532696 ~ 21537673 (+)
LOC110504008 LOC106612987 coding downstream 17361 21543309 ~ 21557646 (+)
sacs LOC106612984 coding downstream 122423 21648371 ~ 21683308 (+)
trappc4 LOC106612982 coding downstream 184598 21710546 ~ 21712020 (+)
cfap45 LOC106612979 coding downstream 204662 21730610 ~ 21736111 (+)
G1912734 NA non-coding upstream 35266 21486110 ~ 21486338 (+)
G1912729 NA non-coding upstream 46828 21474499 ~ 21474776 (+)
G1912715 NA non-coding upstream 72719 21448562 ~ 21448885 (+)
G1912713 NA non-coding upstream 74829 21446533 ~ 21446775 (+)
G1912674 NA non-coding upstream 129433 21391871 ~ 21392171 (+)
G1912751 NA non-coding downstream 15277 21541225 ~ 21541463 (+)
G1912760 NA non-coding downstream 39481 21565429 ~ 21565704 (+)
G1912764 NA non-coding downstream 44745 21570693 ~ 21570893 (+)
G1912765 NA non-coding downstream 45475 21571423 ~ 21573426 (+)
G1912775 NA non-coding downstream 61832 21587780 ~ 21588068 (+)
G1912565 LOC106612993 other upstream 319155 21201136 ~ 21202449 (+)
G1911474 NA other upstream 1214212 20304763 ~ 20307392 (+)
G1911460 LOC105030512 other upstream 1235538 20284320 ~ 20286066 (+)
G1910697 NA other upstream 1901874 19619418 ~ 19619730 (+)
G1909739 wdr81 other upstream 2724326 18789221 ~ 18797278 (+)
G1913153 NA other downstream 667842 22193790 ~ 22194607 (+)
G1915361 LOC106611080 other downstream 1899241 23425189 ~ 23426072 (+)
G1916129 NA other downstream 2486317 24012265 ~ 24012808 (+)
G1916588 NA other downstream 2992412 24518360 ~ 24519017 (+)

Expression


Co-expression Network