LOC110504006 (LOC106612989)


Basic Information

Item Value
gene id LOC110504006
gene name LOC106612989
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21526228 ~ 21535878 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036961210.1
ttatgcttccaaaaccgtaCGTCAAGCGATGCGTGGTAATGTTCAGATTGAGCGTCGGGGCTCTTAACAAAGTTCCACTGTATAGAAGACGCCTTCGTCCAATGAATTATGTGTAATGAAactgagtcatgatcaagggaAAACTGCTGTCGAAGGTCCTTCAGAACGATGTTGAGCAGGAGAGGGATATGAGGGCTGAGATCCAGGAGATGAAGAAGGAGCACAACTCCGTTAGCATGATGGATGAGTTTGCCAGATACGCCAGACTAGAGCGCAAAATCAACAAGATGACTGACAAGCTGAAGACACatgTCAAGTCAAGAACTGCTCAACAAGCCAAAATGAAATGGATGGTGAATATAGGTTTTTATATCCTGCAGGCTGCTCTGATGATCTCCCTGATTTGGAAGTATTATGCTGACCCAGTGACTGTTGTACCCAGTAAGTGGATTGCCCCCCTGGAGCAGATGGTGGCTTTCCCATCTAGAGTAGCAGGTGGTGTTGGAATCACATGCTGGCTGGTGGTGTGCAACAAAGTGGTGTCTATTGGTCTACATGCTGTTAGCTAAGGAATGGTATCTTCTCATGTCTTATTTATTCCCCAAATGTTCTGAGAATGAAGTCAGGCAGTGTTACTCAGCGCTTTGATATTACAGTTTAAACCGGTACTGTTGGTATGCACCTTTTTACAAAGCACCCCATATTCAAAGGTTGCCTTACATTGCCAGTGTTATTGCACATATTTGACGGTCTCTCATGTTGGCTTTGGAATTGTATGTTGTTTCACAGGTTGCTACTCTGCGAAATGATTGTATGAGCATGTTTTAATGAGCATGTATTTAAATCTCATTCCAACTTATTGAGATGAGTTGAGCAAGAAGTGTTAAAATTGTTTAATTGTTATGTCATTTTGTTAATTTGTTATTCATGTTAATTGTAGGCATGGTCTGTGGCAACATTTTCATTTTGCTGAACCAATATCACAAAGTTTACTGTTTGGGTTTTGGAAGTGTTGAAGTATGCATAAGAAAATATGCGTACTTCAACACAATAAAGAATTTGAAATCC
>XM_021582773.2
TCCCGAGTTacatttacacacaggtgttcggagcatGCTAATTAGCACTGGTGGCCGCCACTTGGCTGCCATAAACAAGCGCTGTAATATGGAGATATGGCCGCATGTGAACACTAACCCTATCAAGCTGTCGAAGGTCCTTCAGAACGATGTTGAGCAGGAGAGGGATATGAGGGCTGAGATCCAGGAGATGAAGAAGGAGCACAACTCCGTTAGCATGATGGATGAGTTTGCCAGATACGCCAGACTAGAGCGCAAAATCAACAAGATGACTGACAAGCTGAAGACACatgTCAAGTCAAGAACTGCTCAACAAGCCAAAATGAAATGGATGGTGAATATAGGTTTTTATATCCTGCAGGCTGCTCTGATGATCTCCCTGATTTGGAAGTATTATGCTGACCCAGTGACTGTTGTACCCAGTAAGTGGATTGCCCCCCTGGAGCAGATGGTGGCTTTCCCATCTAGAGTAGCAGGTGGTGTTGGAATCACATGCTGGCTGGTGGTGTGCAACAAAGTGGTGTCTATTGGTCTACATGCTGTTAGCTAAGGAATGGTATCTTCTCATGTCTTATTTATTCCCCAAATGTTCTGAGAATGAAGTCAGGCAGTGTTACTCAGCGCTTTGATATTACAGTTTAAACCGGTACTGTTGGTATGCACCTTTTTACAAAGCACCCCATATTCAAAGGTTGCCTTACATTGCCAGTGTTATTGCACATATTTGACGGTCTCTCATGTTGGCTTTGGAATTGTATGTTGTTTCACAGGTTGCTACTCTGCGAAATGATTGTATGAGCATGTTTTAATGAGCATGTATTTAAATCTCATTCCAACTTATTGAGATGAGTTGAGCAAGAAGTGTTAAAATTGTTTAATTGTTATGTCATTTTGTTAATTTGTTATTCATGTTAATTGTAGGCATGGTCTGTGGCAACATTTTCATTTTGCTGAACCAATATCACAAAGTTTACTGTTTGGGTTTTGGAAGTGTTGAAGTATGCATAAGAAAATATGCGTACTTCAACACAATAAAGAATTTGAAATCC
>XM_036961209.1
CGTGGTTCAGACTGGATGTGTCTTCCATTTATGATAAGCGCAGCAGCAACAAAGGTTGATAAGAAGAAATGGCTGACGGGTGCGCTTGGTTCCTGGTGCTGGGATCTGTCTTTTTGTGCAATCTCTTCAAAATACTGTTGCCGACCATTTCCTCTTTCCTGTCGAAGGTCCTTCAGAACGATGTTGAGCAGGAGAGGGATATGAGGGCTGAGATCCAGGAGATGAAGAAGGAGCACAACTCCGTTAGCATGATGGATGAGTTTGCCAGATACGCCAGACTAGAGCGCAAAATCAACAAGATGACTGACAAGCTGAAGACACatgTCAAGTCAAGAACTGCTCAACAAGCCAAAATGAAATGGATGGTGAATATAGGTTTTTATATCCTGCAGGCTGCTCTGATGATCTCCCTGATTTGGAAGTATTATGCTGACCCAGTGACTGTTGTACCCAGTAAGTGGATTGCCCCCCTGGAGCAGATGGTGGCTTTCCCATCTAGAGTAGCAGGTGGTGTTGGAATCACATGCTGGCTGGTGGTGTGCAACAAAGTGGTGTCTATTGGTCTACATGCTGTTAGCTAAGGAATGGTATCTTCTCATGTCTTATTTATTCCCCAAATGTTCTGAGAATGAAGTCAGGCAGTGTTACTCAGCGCTTTGATATTACAGTTTAAACCGGTACTGTTGGTATGCACCTTTTTACAAAGCACCCCATATTCAAAGGTTGCCTTACATTGCCAGTGTTATTGCACATATTTGACGGTCTCTCATGTTGGCTTTGGAATTGTATGTTGTTTCACAGGTTGCTACTCTGCGAAATGATTGTATGAGCATGTTTTAATGAGCATGTATTTAAATCTCATTCCAACTTATTGAGATGAGTTGAGCAAGAAGTGTTAAAATTGTTTAATTGTTATGTCATTTTGTTAATTTGTTATTCATGTTAATTGTAGGCATGGTCTGTGGCAACATTTTCATTTTGCTGAACCAATATCACAAAGTTTACTGTTTGGGTTTTGGAAGTGTTGAAGTATGCATAAGAAAATATGCGTACTTCAACACAATAAAGAATTTGAAATCC
>XM_036961211.1
ACAACAATCCCACAATCATGGATCGGGAGCTGCTGGGAGAAGTGGGACTGTAATgcttggggagggggaggggctcaCATGCTGTACCCCCGCCGCTCCACCCCCAAATTAACGAGGATTATGTAATCCGAAACTGGGTGGGGGAGGGTAGGCTAACGTATTTACATTACTATGCCATTTGACTTTTCTCTTTGTCATGATGCAAAAACAGAGCCTTTGTGGTACTAGTTACCGGGAGAGCGACAAGTAAAACAGTATGTTAGTCAGGCTTTAGTAGCCTGTAAACATAAAGGCCAAATAGCAGCCCCCTCAATCCACCAGCAACACACGGAGGCATCCATCCACCCGCCATGTCAACCAGTCTACGCTGTCGAAGGTCCTTCAGAACGATGTTGAGCAGGAGAGGGATATGAGGGCTGAGATCCAGGAGATGAAGAAGGAGCACAACTCCGTTAGCATGATGGATGAGTTTGCCAGATACGCCAGACTAGAGCGCAAAATCAACAAGATGACTGACAAGCTGAAGACACatgTCAAGTCAAGAACTGCTCAACAAGCCAAAATGAAATGGATGGTGAATATAGGTTTTTATATCCTGCAGGCTGCTCTGATGATCTCCCTGATTTGGAAGTATTATGCTGACCCAGTGACTGTTGTACCCAGTAAGTGGATTGCCCCCCTGGAGCAGATGGTGGCTTTCCCATCTAGAGTAGCAGGTGGTGTTGGAATCACATGCTGGCTGGTGGTGTGCAACAAAGTGGTGTCTATTGGTCTACATGCTGTTAGCTAAGGAATGGTATCTTCTCATGTCTTATTTATTCCCCAAATGTTCTGAGAATGAAGTCAGGCAGTGTTACTCAGCGCTTTGATATTACAGTTTAAACCGGTACTGTTGGTATGCACCTTTTTACAAAGCACCCCATATTCAAAGGTTGCCTTACATTGCCAGTGTTATTGCACATATTTGACGGTCTCTCATGTTGGCTTTGGAATTGTATGTTGTTTCACAGGTTGCTACTCTGCGAAATGATTGTATGAGCATGTTTTAATGAGCATGTATTTAAATCTCATTCCAACTTATTGAGATGAGTTGAGCAAGAAGTGTTAAAATTGTTTAATTGTTATGTCATTTTGTTAATTTGTTATTCATGTTAATTGTAGGCATGGTCTGTGGCAACATTTTCATTTTGCTGAACCAATATCACAAAGTTTACTGTTTGGGTTTTGGAAGTGTTGAAGTATGCATAAGAAAATATGCGTACTTCAACACAATAAAGAATTTGAAATCC

Function

NR:

description
tail-anchored protein insertion receptor WRB-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036961210.1 False 1068 mRNA 0.41 5 21526228 21532483
XM_021582773.2 False 1049 mRNA 0.42 5 21526228 21532663
XM_036961209.1 False 1080 mRNA 0.41 5 21526228 21533948
XM_036961211.1 True 1289 mRNA 0.43 5 21526228 21535878

Neighbor

gene id symbol gene type direction distance location
LOC110504001 LOC106581123 coding downstream 5632 21504733 ~ 21520596 (-)
LOC118944001 NA coding downstream 26287 21487812 ~ 21499941 (-)
LOC110503995 LOC106612993 coding downstream 313669 21201133 ~ 21212559 (-)
LOC110503993 LOC106612995 coding downstream 374553 21139516 ~ 21151675 (-)
LOC118944112 LOC106612996 coding downstream 399644 21117109 ~ 21126584 (-)
LOC110504009 LOC106612986 coding upstream 90803 21626681 ~ 21642328 (-)
LOC110504013 LOC106612981 coding upstream 148759 21684637 ~ 21703459 (-)
LOC110504015 LOC106612983 coding upstream 172222 21708100 ~ 21710536 (-)
slc37a4a LOC106612980 coding upstream 176208 21712086 ~ 21730320 (-)
LOC110504016 LOC106612978 coding upstream 199229 21735107 ~ 21755619 (-)
G1913497 NA non-coding downstream 73 21525843 ~ 21526155 (-)
G1913483 NA non-coding downstream 30720 21495267 ~ 21495508 (-)
G1913474 NA non-coding downstream 43621 21482339 ~ 21482607 (-)
G1913469 NA non-coding downstream 54065 21471929 ~ 21472163 (-)
G1913495 NA non-coding upstream 470 21536348 ~ 21537642 (-)
G1913503 NA non-coding upstream 6389 21542267 ~ 21542486 (-)
G1913515 LOC106612987 non-coding upstream 14650 21550528 ~ 21551388 (-)
G1913519 NA non-coding upstream 23823 21559701 ~ 21559966 (-)
G1913524 NA non-coding upstream 29621 21565499 ~ 21565698 (-)
G1912470 NA other downstream 549992 20972679 ~ 20976236 (-)
G1911862 NA other downstream 1064791 20460668 ~ 20461437 (-)
G1910996 NA other downstream 1834715 19691066 ~ 19691513 (-)
G1910651 NA other downstream 2034620 19490717 ~ 19491608 (-)
G1910539 NA other downstream 2193003 19332841 ~ 19333225 (-)
G1913665 NA other upstream 327710 21863588 ~ 21864274 (-)
G1913663 NA other upstream 335375 21871253 ~ 21872149 (-)
G1915836 NA other upstream 2215965 23751843 ~ 23752463 (-)
LOC110504083 NA other upstream 4627587 26163462 ~ 26165289 (-)
LOC110503381 LOC106613064 other upstream 4674538 26208892 ~ 26241410 (-)

Expression


Co-expression Network