LOC110504007


Basic Information

Item Value
gene id LOC110504007
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21532696 ~ 21537673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582774.2
GGCccccatagctgtatggatctatGCAAAACTGCTACAGCAAGTAATGACACTGAAGTCGAGCCAAAAAGGCGATCCACGAGGTTGTCATCAAAACCCACTACTCCGGCTAAACCAGAGCCTAAGACAAAGACACCAGTCAAGGCAGCAGCCAAGCCCAAAAAAGTAAAGGAGGTAGTAGAGAAGGTCAAGCCTGAGGAGAAGAAAGAAGCTCCTGAGGAAAAAACAGCACCGGCAGAAAACGGAGAGACCAAAGATGAGGAGGAGGCAGCAGAAGAGGCAGATGCTGATGCAGATGAGcctgagaaagaggaggatgaggcAGAATAATAAGCTTACACTTTTGCCAGTGCTCCCCGTACCTCCTTTCTTGTACAATGCAGAGGAATATTTTTATCAACTATTTTCTTAAGAAAAGGCAGGTTGTGTAGTAGTAAGATTGTAGAAACActtattctccccccccccccccccttttttttttttttacacctctgGAAGAAAAGTTATGGTCATTGTGTGTTTCCCTTTTCTTTTGTAGTCTGGGGCAGTTGTCAGAGGGAGGGGGGCAGGTTTGCAGCAATGACATGCAATCATGTCAATATCAGGAATTTGTTATTCAACTGGGAGAGCTTGTCTGACACTAACATTCCATAGGCTTTATGGGGGACAGTTTATTTAACCTGTATTGTATGGGgaagggttggggggggggggggggggtttatacaCAATAATACTTGTTTCATTTTTGTTTATAATGGGTAGGAATGTGGTGACTGTTTTAAGCTGTGCTCTATGAATATTAACTGTTTTATGAATCTACAGTTATGATTCATCATCATCCTCCCTAGTACATGTACTGGATTTTTCGTCAGGCCTGTGCATTATGTTAAGTGTTGTTTGACTCTGTTCGGTGATGGCATTGCAATAACATTTGATATAGCTGCTGTAAAACTAAGGTTTTTTTCATAATTTCTATGCAGTATGTAATGGTACGTTGTGGGGAATGGGGATGGTTCATGTGTTTTTAGCCAAGCTAGTAACATGAAATGCATTACAGTGTTAAACATACTGGTTGTAGCTTATCCTTTTGGGGATACTGATAAACATGACTGTAATTTCACTTAATCTTTCAAGTGAACATAGCAGCTGTAGCAAGATTTACATGTGGTTTTAGGATTTTATGTACAGTATTTCTCCTTTTTTTGTAGCTGTATCTGTGTTATGATTGATATAAGCGTGTCAATTTAATTAAATGGTTGTaatttc
>XM_021582775.2
GTAGGATAAGGAATATAATATAGAGAGGGGGATCCAATCCGGTTTCAGCTCGTTTCCGTACGTAGGCCTACTGATGGAACATTTATGTTAGTTACAGTGTGTTCTGAAGGTACTGACTGAGTTACATCGAACACTTTCAGAAGCCTGCACTGAATTTTCAGTAACTGAGAAGGCTAATTTGTTATCTAGACAATACAAGTAAAGCAGCCATGCCGAAAAGAAGCAAAGCAAGTAATGACACTGAAGTCGAGCCAAAAAGGCGATCCACGAGGTTGTCATCAAAACCCACTACTCCGGCTAAACCAGAGCCTAAGACAAAGACACCAGTCAAGGCAGCAGCCAAGCCCAAAAAAGTAAAGGAGGTAGTAGAGAAGGTCAAGCCTGAGGAGAAGAAAGAAGCTCCTGAGGAAAAAACAGCACCGGCAGAAAACGGAGAGACCAAAGATGAGGAGGAGGCAGCAGAAGAGGCAGATGCTGATGCAGATGAGcctgagaaagaggaggatgaggcAGAATAATAAGCTTACACTTTTGCCAGTGCTCCCCGTACCTCCTTTCTTGTACAATGCAGAGGAATATTTTTATCAACTATTTTCTTAAGAAAAGGCAGGTTGTGTAGTAGTAAGATTGTAGAAACActtattctccccccccccccccccttttttttttttttacacctctgGAAGAAAAGTTATGGTCATTGTGTGTTTCCCTTTTCTTTTGTAGTCTGGGGCAGTTGTCAGAGGGAGGGGGGCAGGTTTGCAGCAATGACATGCAATCATGTCAATATCAGGAATTTGTTATTCAACTGGGAGAGCTTGTCTGACACTAACATTCCATAGGCTTTATGGGGGACAGTTTATTTAACCTGTATTGTATGGGgaagggttggggggggggggggggggtttatacaCAATAATACTTGTTTCATTTTTGTTTATAATGGGTAGGAATGTGGTGACTGTTTTAAGCTGTGCTCTATGAATATTAACTGTTTTATGAATCTACAGTTATGATTCATCATCATCCTCCCTAGTACATGTACTGGATTTTTCGTCAGGCCTGTGCATTATGTTAAGTGTTGTTTGACTCTGTTCGGTGATGGCATTGCAATAACATTTGATATAGCTGCTGTAAAACTAAGGTTTTTTTCATAATTTCTATGCAGTATGTAATGGTACGTTGTGGGGAATGGGGATGGTTCATGTGTTTTTAGCCAAGCTAGTAACATGAAATGCATTACAGTGTTAAACATACTGGTTGTAGCTTATCCTTTTGGGGATACTGATAAACATGACTGTAATTTCACTTAATCTTTCAAGTGAACATAGCAGCTGTAGCAAGATTTACATGTGGTTTTAGGATTTTATGTACAGTATTTCTCCTTTTTTTGTAGCTGTATCTGTGTTATGATTGATATAAGCGTGTCAATTTAATTAAATGGTTGTaatttc

Function

NR:

description
PREDICTED: high mobility group nucleosome-binding domain-containing protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582774.2 False 1272 mRNA 0.41 6 21532696 21537673
XM_021582775.2 True 1460 mRNA 0.41 6 21534355 21537673

Neighbor

gene id symbol gene type direction distance location
LOC110504000 LOC106612988 coding upstream 6748 21521604 ~ 21525948 (+)
dscamb LOC106612992 coding upstream 176241 21229469 ~ 21356455 (+)
LOC110503996 NA coding upstream 331819 21198192 ~ 21200877 (+)
atm atm coding upstream 338094 21151903 ~ 21194602 (+)
LOC118944065 NA coding upstream 399120 21130444 ~ 21133576 (+)
LOC110504008 LOC106612987 coding downstream 5636 21543309 ~ 21557646 (+)
sacs LOC106612984 coding downstream 110698 21648371 ~ 21683308 (+)
trappc4 LOC106612982 coding downstream 172873 21710546 ~ 21712020 (+)
cfap45 LOC106612979 coding downstream 192937 21730610 ~ 21736111 (+)
lbhl NA coding downstream 322359 21860032 ~ 21864601 (+)
G1912734 NA non-coding upstream 46358 21486110 ~ 21486338 (+)
G1912729 NA non-coding upstream 57920 21474499 ~ 21474776 (+)
G1912715 NA non-coding upstream 83811 21448562 ~ 21448885 (+)
G1912713 NA non-coding upstream 85921 21446533 ~ 21446775 (+)
G1912751 NA non-coding downstream 3552 21541225 ~ 21541463 (+)
G1912760 NA non-coding downstream 27756 21565429 ~ 21565704 (+)
G1912764 NA non-coding downstream 33020 21570693 ~ 21570893 (+)
G1912765 NA non-coding downstream 33750 21571423 ~ 21573426 (+)
G1912775 NA non-coding downstream 50107 21587780 ~ 21588068 (+)
G1912565 LOC106612993 other upstream 330247 21201136 ~ 21202449 (+)
G1911474 NA other upstream 1225304 20304763 ~ 20307392 (+)
G1911460 LOC105030512 other upstream 1246630 20284320 ~ 20286066 (+)
G1910697 NA other upstream 1912966 19619418 ~ 19619730 (+)
G1909739 wdr81 other upstream 2735418 18789221 ~ 18797278 (+)
G1913153 NA other downstream 656117 22193790 ~ 22194607 (+)
G1915361 LOC106611080 other downstream 1887516 23425189 ~ 23426072 (+)
G1916129 NA other downstream 2474592 24012265 ~ 24012808 (+)
G1916588 NA other downstream 2980687 24518360 ~ 24519017 (+)

Expression


Co-expression Network