snrpd2 (snrpd2)


Basic Information

Item Value
gene id snrpd2
gene name snrpd2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21796966 ~ 21800465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582799.2
ATTTATTTTTCAAGCAAAGCATAAGGGTATATatatactccagtctagtaggtggcggtaatacAACAAAATTGAATGCCAACTGCCCTtaaaccaaagaagaagaagttgTTGTACAGAGAACACACGAGTGTGGCGTTGGAGATTAAAGAAGCAGGCAAAAAGCTAACATATTTACTAGCTTGGTTTCCTGCTAAAATCGCCATTCGCTGAAGAAAATATGAGCCTGTTAAATAAACCCAAGTCTGAGATGACTCCTGAGGAGCTCCAGaagcgggaggaggaggagtttaATACTGGGCCCCTGTCTGTGCTCACCCAGTCTGTCAAAAACAACACACAGGTCCTCGTCAACTGCCGAAACAACAAGAAGCTGCTTGGCCGTGTCAAGGCATTTGACAGACACTGCAACATGGTCCTGGAgaatgtgaaggagatgtggaCAGAAGTGCCCAAGAGTGGCAAGGGCAAGAAGAAGTCCAAACCAGTAAACAAGGACCGTTACGTCTCCAAGATGTTTCTGAGAGGAGACTCCGTGATCGTGGTGCTGAGAAACCCCCTCATCACAGGGAAATAGACTGTTAATTTGCCCACTTCACCTGTCTTTGTCAAAGAGATGATGGCAGGCAGTGGATGGGCTGTCATTATgtgaaaataatgttttttgtTTTGGAACCGAGAGGAATCTGAGCTGTGTGTTTAGAATTGAATGTGAGAAAATGATACCAAGTTCACACTTTGGATTGCTGATTAAGATTATTCCTGACGTTCTATTTTGTTTAGGGCGCTAATTTAGTTTTTCATTTTAATAATAAAAGACGAGAAGTATGGTA

Function

symbol description
snrpd2 Predicted to be involved in spliceosomal snRNP assembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus and viral nucleocapsid. Predicted to be part of spliceosomal complex and spliceosomal snRNP complex. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Orthologous to human SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide).

NR:

description
small nuclear ribonucleoprotein Sm D2

GO:

id name namespace
GO:0000387 spliceosomal snRNP assembly biological_process
GO:0000245 spliceosomal complex assembly biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0034709 methylosome cellular_component
GO:0034715 pICln-Sm protein complex cellular_component
GO:0034719 SMN-Sm protein complex cellular_component
GO:0005829 cytosol cellular_component
GO:0019013 viral nucleocapsid cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0005687 U4 snRNP cellular_component
GO:0005689 U12-type spliceosomal complex cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K11096 SNRPD2, SMD2; small nuclear ribonucleoprotein D2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582799.2 True 833 mRNA 0.43 3 21796966 21800465

Neighbor

gene id symbol gene type direction distance location
vaspb vasp coding downstream 6606 21758038 ~ 21790360 (-)
LOC110504016 LOC106612978 coding downstream 41347 21735107 ~ 21755619 (-)
slc37a4a LOC106612980 coding downstream 66646 21712086 ~ 21730320 (-)
LOC110504015 LOC106612983 coding downstream 86430 21708100 ~ 21710536 (-)
LOC110504013 LOC106612981 coding downstream 93507 21684637 ~ 21703459 (-)
foxg1c LOC106613045 coding upstream 18789 21819254 ~ 21822721 (-)
pglyrp5 polr2i coding upstream 24454 21824919 ~ 21826309 (-)
polr2i rpb9 coding upstream 26385 21826850 ~ 21830323 (-)
LOC110504022 NA coding upstream 44760 21845225 ~ 21849537 (-)
LOC110504025 LOC106612974 coding upstream 85034 21885499 ~ 21896235 (-)
G1913624 NA non-coding downstream 2717 21793627 ~ 21794249 (-)
G1913567 NA non-coding downstream 90579 21705625 ~ 21706387 (-)
G1913566 NA non-coding downstream 91692 21705041 ~ 21705274 (-)
G1913564 LOC106612984 non-coding downstream 113662 21669061 ~ 21683304 (-)
G1913588 NA non-coding downstream 131687 21665040 ~ 21665279 (-)
G1913661 NA non-coding upstream 77757 21878222 ~ 21879232 (-)
LOC110504027 LOC106612972 non-coding upstream 99182 21899621 ~ 21987496 (-)
G1913793 NA non-coding upstream 271375 22071840 ~ 22072322 (-)
G1913752 NA non-coding upstream 278830 22079295 ~ 22080052 (-)
G1913828 NA non-coding upstream 348814 22149279 ~ 22149684 (-)
G1912470 NA other downstream 820730 20972679 ~ 20976236 (-)
G1911862 NA other downstream 1335529 20460668 ~ 20461437 (-)
G1910996 NA other downstream 2105453 19691066 ~ 19691513 (-)
G1910651 NA other downstream 2305358 19490717 ~ 19491608 (-)
G1910539 NA other downstream 2463741 19332841 ~ 19333225 (-)
G1913665 NA other upstream 63123 21863588 ~ 21864274 (-)
G1913663 NA other upstream 70788 21871253 ~ 21872149 (-)
G1915836 NA other upstream 1951378 23751843 ~ 23752463 (-)
LOC110504083 NA other upstream 4363000 26163462 ~ 26165289 (-)
LOC110503381 LOC106613064 other upstream 4409951 26208892 ~ 26241410 (-)

Expression


Co-expression Network