foxg1c (LOC106613045)


Basic Information

Item Value
gene id foxg1c
gene name LOC106613045
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21819254 ~ 21822721 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021582800.2
TCTGCCCCGCAACTATGTCTCGTTTAAGTTCTCCGCTTGTTTACTTACTTTACGAGTTTACCTACTCCTAAATTACTTACACACCTTCACCTAATTCGGCTTTGATGGGCTGTTTGCCAGGTTATTGTGTAAACAGACggaaaggagtggagagaggCGTTCCCAGAGGGCGAAACGCAGGTGAGAGGTTTGAGTTTCACGCTCCTCGAGAAGTGTTATAATTGAACGTGGGAGTTCATCTGCCAGTCAGTGAAATTGGCAGCGCACTAAACTAATCGCAAAGTTTGTAGTATACGGCTTGTGTGACTATGCATGTTTGGATCAGGATTGTTGAGCAGGAGTTTAAGCACGAGTGGCGCATTTTGTCTTTGGCACCCCAAGACGACGTGCGTATTATTTCGTGGATTTAGACGTTCCTTCTCTTCAGACTGCCAGACGCCGCGGGAAGTGGGTGATGTTGAACATGGAGGATTTGAAAGCTCCTGTCAGATTTTTCCACAAGTCTTCATTCAGCATCAGCAGCCTGCTGTTTCGACGAGAGGGAGTGATGAGTGATGACGGTGCCGTGCTGGATGGGCATCTTTCCAGAAAACACATTTCTTCGGGGCCATCTACTAGGCCTAAAGAAGTTTGTGCTCAAGATGGAACATATGATTTACATGGAGACAAGAATTGTCATAAAGAATACGCAGTCCAAGAAGACAAACGACTCTCCAGAAATGGAGAAAGGGAAGACAGAGAAGATACCGATGGAGTGGGAGAGGTGAAGACATCTGGAGGAGTAGAGGGAAAAGCTAAACCGGAGAAACCTCCTTTCAGCTATAACGCATTGATAATGATGGCTATTCGCCAGAGCCCGGAGCGAAGGCTTACCCTCAACGGCATTTACGAGTTCATCATGGGCAACTTCCCTTACTATCAAGAAAATAGACAAGGATGGCAGAATTCAATCCGACATAACCTGAGTTTGAACAAGTGCTTCGTCAAAGTACCTCGCCATTATGATGACCCAGGCAAAGGCAACTACTGGATGCTTGACCCTTCAAGCGAGGACGTGTTCATTGGTGGCACAACTGGTAAACTCCGGCGCCGTTCCACGGCGGGCACCCAGACAAAACTGGCAATAAAACGGGGTGCCCGTTTGACCTCCACCACTGCCGCCGGGCTGGCGTTCACCGGGTCCTTTTATTGGCCGGTGCCATCGTTTCTAAACCTTCAACCTCCTGCGAACTCACACCCGGGCATGGGGTCATGTGTAGGGCCCAATCACTCCAACTATGCCACCTCGATCCTTTCTCAACGGTCACACCACATGAGTGCCATAAATGCTGGAGCAGACCGACTCTTCCAAACAAACCAGGAGTCATCGTATTTTGGCATGGGTGCAGGCGCGCAATACCGTCGTCATCACCAAATGAGCGCAGCCTCCACATTCGCCTCTTCATCGTTGCCATGCACTTTGTCTCTCCCTAACCCTTGTTCCTTTAACTTGCTCAACCGACAAGCTAGTTATTTTTACTCGCATCACCAGGTACCCCACCCGGCGACATTCAATACATGGTGCCAGGATGAGTACCCCCCAACCAAGGCATCTCCAGCCGGACCCATTTACTCCGGAAAAAATGGGCCATCGGATTGCTTGGGGAGTTTGTGTGCGGAGTTCACTAATTATTTTCCCTCAATCAGCCCCATGAGCTCCCTCAACACCAATCTTTCTTGGGATGCAGGGAAATGACCATATTTAAATTAAAAACGTCAGTTTCTCTTTATGGATTAAATCTTACTAATGTCTACCAATGCTGCGAAATGTATTCAAATAATTTATGTGAGTTTGCTATTTCCCAAATAGGCATATGTCTTTGGACAGAAAAcaattatttaatattttttaaataattgccACTCACGCTTTAATGTGCAATTTAATCTAAACGTATCAACAACAAATTCACGAATGGTCAATATTTGTGGTGCGTTCagatcataaaaaaatatatatttctttcgttagtattttattttgtattttaataGACCACTAACTAACTATACATCACAAGATGAAGAGAGATGAGAAAATGATGCTGTATTTGAATTATTGCGCATGAAGTAAGAGTTTCATAATGAGGAATAATGTCGTGAAAATAACAAACTATTTGGTATCTGTGAAGGTAATTATCATGGTCGAGGTTGTTATTGCAAGATTTTGCATCATCGTTTAGGCTATTTTTACAAACAGGCTAAACCATCACTCTCTGAAGTTTGTATTCGTTTTTTTCGTTATTGGTGTTATAACTTCGTTTTGCGATTCGTAGGTCTAGTTCTTAGGGATGTGGGCTACATGAAACATTAACCATTTaatgaaaaaaatgttttaaaaaaatgaaaatatcttGTCCGACTGTGTTCCATAGGTACTCTCCAGATATTTCCATTAATATAACATATCTTCTGACAACTGGATGTGTTTTAACAATTCACTGTTATTATCTTAAAACAAACTTGAAAGAACAATTGTCTTCATAAATGTCCTCTATCAATcgtattgtatatagcctcgttattgttattcttattgtgtttctttttattattactttttatttgagTCTAcatggtaaatattttcttatctcttcttgaactgcactgttgtttaagggctagtaagtaagcatttcatggtaaagtctacacttgtattcagcgcatgtgacaaataaagtttgatttgatttgatattgcttGAGGAAGGCTGTGCGTAATTAACGGTTTGCCCTTTAATTAAAAACGAAATCTTTGGTCATGTCTGAAAAAGTATTGGAAATATAGTGTTTACTCTGATGCTATTAAAATAATgtatacattacagacaaaagtcCAGAATTATTTTGATGTTCCTGAATTAAGAGTAAAAGTTCCTCATAAAAATATATAGGCTAAGAGTTTTTCTCTGTCTGCACTCTCCTATTACTTCAAAATCAAATCTGCAGTGATTGTCTCCATCTGTGTTTGTAAATGTATCTCAATCGTCTCAATGCTCAATATGAACACAATGCTGTGTTATGCACTTCTTACATTTTTAGAAAATAACTATACTAAATATGCTTTGAGAAATGATTCATCCCAGAGATGGTGACTGTATGTCTTGCATGATTTGTACTGTATCTGCACTAGCTATCTTTTTCCCTTTTAAGCCTGAAAATGTTTGTTTACAGGGAACTCTGTGCATGtcatatactgtaggctatacgTGTAATTAATTTTATCCATTTTATAATGTGTGTGcaataaaaacaaaaatagtGATATAAAAGGGATGAGTTGTATTACATATGCATTCAAAACATAACAGCCGGTTATGTGATACTTAAGGAACAGGAAGAGAGTGTCAATGAGTCCAGAAGGAATCCAGCTGCATCCAAATAGCACTCACACATGCacgcaggacacacacacattctccc

Function

NR:

description
forkhead box protein G1-like

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09385 FOXG; forkhead box protein G

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021582800.2 True 3468 mRNA 0.41 1 21819254 21822721

Neighbor

gene id symbol gene type direction distance location
snrpd2 snrpd2 coding downstream 18789 21796966 ~ 21800465 (-)
vaspb vasp coding downstream 28894 21758038 ~ 21790360 (-)
LOC110504016 LOC106612978 coding downstream 63635 21735107 ~ 21755619 (-)
slc37a4a LOC106612980 coding downstream 88934 21712086 ~ 21730320 (-)
LOC110504015 LOC106612983 coding downstream 108718 21708100 ~ 21710536 (-)
pglyrp5 polr2i coding upstream 2198 21824919 ~ 21826309 (-)
polr2i rpb9 coding upstream 4129 21826850 ~ 21830323 (-)
LOC110504022 NA coding upstream 22504 21845225 ~ 21849537 (-)
LOC110504025 LOC106612974 coding upstream 62778 21885499 ~ 21896235 (-)
LOC110504027 LOC106612972 coding upstream 76900 21899621 ~ 21987496 (-)
G1913624 NA non-coding downstream 25005 21793627 ~ 21794249 (-)
G1913567 NA non-coding downstream 112867 21705625 ~ 21706387 (-)
G1913566 NA non-coding downstream 113980 21705041 ~ 21705274 (-)
G1913564 LOC106612984 non-coding downstream 135950 21669061 ~ 21683304 (-)
G1913588 NA non-coding downstream 153975 21665040 ~ 21665279 (-)
G1913661 NA non-coding upstream 55501 21878222 ~ 21879232 (-)
G1913793 NA non-coding upstream 249119 22071840 ~ 22072322 (-)
G1913752 NA non-coding upstream 256574 22079295 ~ 22080052 (-)
G1913828 NA non-coding upstream 326558 22149279 ~ 22149684 (-)
G1912470 NA other downstream 843018 20972679 ~ 20976236 (-)
G1911862 NA other downstream 1357817 20460668 ~ 20461437 (-)
G1910996 NA other downstream 2127741 19691066 ~ 19691513 (-)
G1910651 NA other downstream 2327646 19490717 ~ 19491608 (-)
G1910539 NA other downstream 2486029 19332841 ~ 19333225 (-)
G1913665 NA other upstream 40867 21863588 ~ 21864274 (-)
G1913663 NA other upstream 48532 21871253 ~ 21872149 (-)
G1915836 NA other upstream 1929122 23751843 ~ 23752463 (-)
LOC110504083 NA other upstream 4340744 26163462 ~ 26165289 (-)
LOC110503381 LOC106613064 other upstream 4387695 26208892 ~ 26241410 (-)

Expression


Co-expression Network