pglyrp5 (polr2i)


Basic Information

Item Value
gene id pglyrp5
gene name polr2i
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048588.1
NCBI id CM023242.2
chromosome length 45930806
location 21824919 ~ 21826309 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021581800.2
CAATATGTTGTTAACAACTTATTCTAAGGAACGTCAAGGAAACTTGCTCTTTTAAATGGCCTCTAGCGACTAAATCAAAAGCAAGTCtggataatataatacatggatTTAAGAGTCACTGTAGAGGTGGTTACTCGGGAACAGTGGGGAGCAGTAGCCCCTCGATGCCGGGAGACCCTCAAGTGTCCTGCTCAAAGAGTTGTCATACACCACACTGCACTGTTGCACTGCAGGGGCATCCGAGAATGTATGGACCAGCTCATCCACATACAGACAATGCATATGCAGGATAGGAACTTTGATGACATTGGATACAACTTTCTTATTGGGGGAGATTGCACAGTGTATGAGGGCCGAGGCTGGGGTGTTGTGGGTGCACATACCAAGGACAATAACCGTGACTCTTTGGGCATTGCCTTCATGGGCAACTTCAACAatgagagCCCTAGTCCAGCAGCCCTGTCATCTGTTAAACAGCTCCTGCAGTGTGGTGTTTCCCAGGGGCATTTGCACCCTGGATTTACCCTGCTTGGGCATAGAGACTTGGGGGACACTGAATGTCCTGGGGAGAGACTATACGCTGCACTAAAACATCTACAATTTCCCTAAACATAACCTCTTCCACAGGCTCAATTGCTACTGGTTCGACAGAGAAAGTGAGTCGGTGGTGAAAGAGAAAACCCTGAACAGCACACTTAACATTTTGGGACTTCCTTGTGTGTTTTTAAACCACTAGATGGGGCAATGATGCTTTATTGTAGCCATGGCCTAAAATGCATACTCTTTTtttcacaagcatttcactagacccgcaataacatctgctaaacacttgtatgtgaccaatcaaatttgatttgataatgggGTTTCCCAAACCCAGTCCTGGGGcccccctgggtgcacattttgtttttgccctagcactacacagctgattcaaatgaccaACTCaccatcaagctttgattatttgaatcagctgtgtagtggaCCATTAGACCACTTTATATATCTGTGTTTTGTAGAGGac
>XM_021581801.2
CAATATGTTGTTAACAACTTATTCTAAGGAACGTCAAGGAAACTTGCTCTTTTAAATGGCCTCTAGCGACTAAATCAAAAGCAAGTCtggataatataatacatggatTTAAGAGTCACTGAGGTGGTTACTCGGGAACAGTGGGGAGCAGTAGCCCCTCGATGCCGGGAGACCCTCAAGTGTCCTGCTCAAAGAGTTGTCATACACCACACTGCACTGTTGCACTGCAGGGGCATCCGAGAATGTATGGACCAGCTCATCCACATACAGACAATGCATATGCAGGATAGGAACTTTGATGACATTGGATACAACTTTCTTATTGGGGGAGATTGCACAGTGTATGAGGGCCGAGGCTGGGGTGTTGTGGGTGCACATACCAAGGACAATAACCGTGACTCTTTGGGCATTGCCTTCATGGGCAACTTCAACAatgagagCCCTAGTCCAGCAGCCCTGTCATCTGTTAAACAGCTCCTGCAGTGTGGTGTTTCCCAGGGGCATTTGCACCCTGGATTTACCCTGCTTGGGCATAGAGACTTGGGGGACACTGAATGTCCTGGGGAGAGACTATACGCTGCACTAAAACATCTACAATTTCCCTAAACATAACCTCTTCCACAGGCTCAATTGCTACTGGTTCGACAGAGAAAGTGAGTCGGTGGTGAAAGAGAAAACCCTGAACAGCACACTTAACATTTTGGGACTTCCTTGTGTGTTTTTAAACCACTAGATGGGGCAATGATGCTTTATTGTAGCCATGGCCTAAAATGCATACTCTTTTtttcacaagcatttcactagacccgcaataacatctgctaaacacttgtatgtgaccaatcaaatttgatttgataatgggGTTTCCCAAACCCAGTCCTGGGGcccccctgggtgcacattttgtttttgccctagcactacacagctgattcaaatgaccaACTCaccatcaagctttgattatttgaatcagctgtgtagtggaCCATTAGACCACTTTATATATCTGTGTTTTGTAGAGGac

Function

symbol description
polr2i Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to be involved in maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter; transcription initiation from RNA polymerase II promoter; and transcription-coupled nucleotide-excision repair. Predicted to act upstream of or within mRNA cleavage and transcription, DNA-templated. Predicted to be located in nucleolus. Predicted to be part of RNA polymerase II, core complex. Orthologous to human POLR2I (RNA polymerase II subunit I).

NR:

description
peptidoglycan recognition protein 1-like isoform X2

GO:

id name namespace
GO:0009253 peptidoglycan catabolic process biological_process
GO:0042742 defense response to bacterium biological_process
GO:0008745 N-acetylmuramoyl-L-alanine amidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01446 PGRP; peptidoglycan recognition protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021581800.2 False 1033 mRNA 0.45 4 21824919 21826309
XM_021581801.2 True 1030 mRNA 0.45 4 21824919 21826309

Neighbor

gene id symbol gene type direction distance location
foxg1c LOC106613045 coding downstream 2198 21819254 ~ 21822721 (-)
snrpd2 snrpd2 coding downstream 24454 21796966 ~ 21800465 (-)
vaspb vasp coding downstream 34559 21758038 ~ 21790360 (-)
LOC110504016 LOC106612978 coding downstream 69300 21735107 ~ 21755619 (-)
slc37a4a LOC106612980 coding downstream 94599 21712086 ~ 21730320 (-)
polr2i rpb9 coding upstream 541 21826850 ~ 21830323 (-)
LOC110504022 NA coding upstream 18916 21845225 ~ 21849537 (-)
LOC110504025 LOC106612974 coding upstream 59190 21885499 ~ 21896235 (-)
LOC110504027 LOC106612972 coding upstream 73312 21899621 ~ 21987496 (-)
LOC110504029 LOC106612970 coding upstream 255126 22081435 ~ 22173799 (-)
G1913624 NA non-coding downstream 30670 21793627 ~ 21794249 (-)
G1913567 NA non-coding downstream 118532 21705625 ~ 21706387 (-)
G1913566 NA non-coding downstream 119645 21705041 ~ 21705274 (-)
G1913564 LOC106612984 non-coding downstream 141615 21669061 ~ 21683304 (-)
G1913588 NA non-coding downstream 159640 21665040 ~ 21665279 (-)
G1913661 NA non-coding upstream 51913 21878222 ~ 21879232 (-)
G1913793 NA non-coding upstream 245531 22071840 ~ 22072322 (-)
G1913752 NA non-coding upstream 252986 22079295 ~ 22080052 (-)
G1913828 NA non-coding upstream 322970 22149279 ~ 22149684 (-)
G1912470 NA other downstream 848683 20972679 ~ 20976236 (-)
G1911862 NA other downstream 1363482 20460668 ~ 20461437 (-)
G1910996 NA other downstream 2133406 19691066 ~ 19691513 (-)
G1910651 NA other downstream 2333311 19490717 ~ 19491608 (-)
G1910539 NA other downstream 2491694 19332841 ~ 19333225 (-)
G1913665 NA other upstream 37279 21863588 ~ 21864274 (-)
G1913663 NA other upstream 44944 21871253 ~ 21872149 (-)
G1915836 NA other upstream 1925534 23751843 ~ 23752463 (-)
LOC110504083 NA other upstream 4337156 26163462 ~ 26165289 (-)
LOC110503381 LOC106613064 other upstream 4384107 26208892 ~ 26241410 (-)

Expression


Co-expression Network